Wall clock time and date at job start Tue Mar 31 2020 11:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35900 * 117.00172 * 179.97438 * 11 10 9 13 13 C 1.38746 * 120.05467 * 359.72752 * 12 11 10 14 14 C 1.38131 * 119.94707 * 179.69741 * 13 12 11 15 15 C 1.38290 * 120.04957 * 0.59675 * 14 13 12 16 16 C 1.38250 * 120.11062 * 359.67603 * 15 14 13 17 17 C 1.50699 * 119.96557 * 180.02562 * 16 15 14 18 18 N 1.46900 * 109.47204 * 269.97597 * 17 16 15 19 19 C 1.46900 * 111.00064 * 180.02562 * 18 17 16 20 20 C 1.53002 * 109.47164 * 180.02562 * 19 18 17 21 21 C 1.52994 * 109.47311 * 179.97438 * 20 19 18 22 22 C 1.52998 * 109.47535 * 179.97438 * 21 20 19 23 23 C 1.53780 * 113.61733 * 274.14046 * 22 21 20 24 24 C 1.53954 * 87.01573 * 220.04527 * 23 22 21 25 25 C 1.53773 * 113.61649 * 176.52594 * 22 21 20 26 26 C 1.38162 * 120.05723 * 0.02573 * 16 15 14 27 27 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 29 29 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 30 30 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 31 31 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 32 32 H 1.08010 * 120.02919 * 359.97292 * 13 12 11 33 33 H 1.07993 * 119.97567 * 180.29505 * 14 13 12 34 34 H 1.07997 * 119.94208 * 179.70200 * 15 14 13 35 35 H 1.08993 * 109.47352 * 29.97953 * 17 16 15 36 36 H 1.09001 * 109.46764 * 149.97894 * 17 16 15 37 37 H 1.00900 * 110.99693 * 56.04955 * 18 17 16 38 38 H 1.08998 * 109.47193 * 300.00007 * 19 18 17 39 39 H 1.09003 * 109.47145 * 60.00057 * 19 18 17 40 40 H 1.08998 * 109.46924 * 299.99991 * 20 19 18 41 41 H 1.09001 * 109.47073 * 59.99368 * 20 19 18 42 42 H 1.09005 * 109.46819 * 300.00136 * 21 20 19 43 43 H 1.09003 * 109.47066 * 59.99836 * 21 20 19 44 44 H 1.09009 * 112.84257 * 45.33207 * 22 21 20 45 45 H 1.09006 * 113.60964 * 334.56243 * 23 22 21 46 46 H 1.08997 * 113.61936 * 105.46304 * 23 22 21 47 47 H 1.09000 * 113.53870 * 270.80415 * 24 23 22 48 48 H 1.09005 * 113.74301 * 139.94343 * 24 23 22 49 49 H 1.09000 * 113.61667 * 254.53221 * 25 22 21 50 50 H 1.09003 * 113.61613 * 25.35546 * 25 22 21 51 51 H 1.07998 * 120.02891 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2707 -6.0394 -0.0007 13 6 3.6563 -5.9682 -0.0064 14 6 4.4064 -7.1281 -0.0007 15 6 3.7773 -8.3596 -0.0018 16 6 2.3968 -8.4332 -0.0018 17 6 1.7146 -9.7770 -0.0023 18 7 1.4924 -10.2128 -1.3875 19 6 0.8272 -11.5219 -1.4272 20 6 0.6138 -11.9416 -2.8830 21 6 -0.0785 -13.3053 -2.9244 22 6 -0.2925 -13.7248 -4.3801 23 6 -1.5879 -13.1712 -4.9967 24 6 -1.7549 -14.5423 -5.6768 25 6 -0.9079 -15.1256 -4.5335 26 6 1.6421 -7.2759 -0.0012 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5566 0.8902 30 1 2.8718 -3.6044 0.8905 31 1 2.8718 -3.6044 -0.8895 32 1 4.1481 -5.0066 -0.0109 33 1 5.4850 -7.0732 -0.0004 34 1 4.3655 -9.2654 -0.0022 35 1 2.3439 -10.5041 0.5108 36 1 0.7568 -9.6984 0.5119 37 1 2.3590 -10.2314 -1.9041 38 1 1.4499 -12.2614 -0.9239 39 1 -0.1369 -11.4550 -0.9230 40 1 -0.0088 -11.2022 -3.3867 41 1 1.5780 -12.0085 -3.3869 42 1 0.5445 -14.0445 -2.4207 43 1 -1.0427 -13.2387 -2.4204 44 1 0.5895 -13.5649 -5.0006 45 1 -2.3621 -12.9513 -4.2616 46 1 -1.4231 -12.3525 -5.6972 47 1 -1.2739 -14.6056 -6.6529 48 1 -2.7829 -14.9046 -5.6874 49 1 -0.1949 -15.8824 -4.8606 50 1 -1.4947 -15.4416 -3.6710 51 1 0.5637 -7.3340 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594978626.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:58 Heat of formation + Delta-G solvation = -41.938405 kcal Electronic energy + Delta-G solvation = -24581.509993 eV Core-core repulsion = 21058.604781 eV Total energy + Delta-G solvation = -3522.905211 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.07900 -39.85417 -38.93369 -37.22871 -35.47841 -34.15696 -32.58916 -31.82424 -30.56600 -28.24248 -27.03174 -26.45766 -25.64361 -23.61975 -23.42165 -23.15907 -22.08682 -21.43657 -20.19890 -19.10455 -18.14606 -17.23423 -16.94633 -16.90036 -16.74099 -16.46035 -16.39140 -16.06104 -15.52455 -15.29871 -14.75180 -14.72796 -14.33658 -14.29181 -14.23648 -13.68162 -13.49143 -13.32342 -13.28607 -13.00891 -12.84123 -12.70795 -12.59037 -12.54354 -12.46096 -12.24319 -12.07720 -11.82069 -11.60804 -11.58337 -11.54894 -11.38839 -11.36091 -10.95890 -10.83626 -10.62654 -9.83128 -9.35274 -9.08376 -8.27057 -6.41160 0.34670 0.53495 1.40673 1.43183 1.54350 2.27166 2.51341 2.75574 3.07250 3.34966 3.74845 3.81021 3.83755 3.86146 3.92625 4.02434 4.13482 4.17072 4.23946 4.25850 4.25950 4.35077 4.42267 4.51692 4.55381 4.66144 4.72612 4.73891 4.77172 4.80963 4.85599 4.90549 4.92043 4.96477 5.06445 5.10757 5.10970 5.14377 5.30793 5.34338 5.43335 5.44644 5.45578 5.50641 5.52265 5.61048 5.68030 5.68447 5.89918 6.06219 6.09416 6.46986 6.57768 6.73529 7.29077 8.86085 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016826 B = 0.001667 C = 0.001554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.650188 B =16789.619270 C =18017.232548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.978 3.022 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.548 4.548 8 H 0.071 0.929 9 C 0.028 3.972 10 C 0.085 3.915 11 O -0.343 6.343 12 C 0.104 3.896 13 C -0.223 4.223 14 C -0.077 4.077 15 C -0.152 4.152 16 C -0.046 4.046 17 C 0.107 3.893 18 N -0.699 5.699 19 C 0.062 3.938 20 C -0.110 4.110 21 C -0.102 4.102 22 C -0.110 4.110 23 C -0.144 4.144 24 C -0.145 4.145 25 C -0.136 4.136 26 C -0.154 4.154 27 H 0.267 0.733 28 H -0.003 1.003 29 H -0.002 1.002 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.126 0.874 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.346 0.654 38 H 0.041 0.959 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.087 0.913 45 H 0.078 0.922 46 H 0.059 0.941 47 H 0.081 0.919 48 H 0.067 0.933 49 H 0.069 0.931 50 H 0.082 0.918 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.092 -32.076 -5.559 32.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.801 3.199 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.585 4.585 8 H 0.089 0.911 9 C -0.010 4.010 10 C 0.011 3.989 11 O -0.258 6.258 12 C 0.059 3.941 13 C -0.242 4.242 14 C -0.095 4.095 15 C -0.171 4.171 16 C -0.046 4.046 17 C -0.021 4.021 18 N -0.331 5.331 19 C -0.067 4.067 20 C -0.148 4.148 21 C -0.140 4.140 22 C -0.129 4.129 23 C -0.181 4.181 24 C -0.183 4.183 25 C -0.174 4.174 26 C -0.173 4.173 27 H 0.076 0.924 28 H 0.016 0.984 29 H 0.017 0.983 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.144 0.856 33 H 0.170 0.830 34 H 0.169 0.831 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.165 0.835 38 H 0.059 0.941 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.106 0.894 45 H 0.097 0.903 46 H 0.078 0.922 47 H 0.099 0.901 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.101 0.899 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.132 -31.599 -5.616 32.359 hybrid contribution 0.643 0.897 0.214 1.125 sum 4.775 -30.702 -5.402 31.537 Atomic orbital electron populations 1.70130 1.08080 1.28230 1.50537 1.26058 0.95833 1.03725 0.94081 0.85264 0.78565 0.77429 0.78669 1.19537 1.20607 1.18272 1.21402 0.93849 0.91008 1.52280 0.91076 1.18969 0.94569 0.91460 0.95953 1.22847 0.95376 0.80262 1.00414 1.86085 1.37553 1.13810 1.88325 1.19536 0.91193 0.86824 0.96521 1.21508 0.92468 1.01048 1.09137 1.21232 1.00858 0.91155 0.96285 1.21216 0.93510 0.98476 1.03871 1.19700 0.93669 0.93969 0.97311 1.20803 0.99784 0.91252 0.90281 1.60419 1.30245 1.29541 1.12877 1.21998 0.98905 0.88317 0.97481 1.21481 1.00889 0.96951 0.95523 1.21473 1.00674 0.96015 0.95829 1.22552 0.97456 0.96449 0.96424 1.23041 0.98002 0.97103 0.99990 1.22866 1.00548 0.96590 0.98259 1.22938 0.99254 0.96316 0.98857 1.20405 1.00342 0.89545 1.07003 0.92441 0.98438 0.98342 0.92201 0.92294 0.85569 0.83026 0.83075 0.92059 0.90480 0.83516 0.94125 0.91497 0.92548 0.91846 0.91279 0.91968 0.89450 0.90347 0.92174 0.90085 0.91381 0.91226 0.89915 0.86293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.32 13.29 21.45 0.28 -57.04 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.98 43.88 29.54 68.60 2.03 45.90 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.55 -31.44 9.11 25.60 0.23 -31.21 16 8 H 0.07 3.80 7.74 -2.91 -0.02 3.78 16 9 C 0.03 1.55 5.34 29.85 0.16 1.71 16 10 C 0.09 3.87 4.68 71.98 0.34 4.21 16 11 O -0.34 -15.30 10.14 -92.43 -0.94 -16.23 16 12 C 0.10 3.84 6.69 22.50 0.15 3.99 16 13 C -0.22 -6.95 9.04 22.37 0.20 -6.75 16 14 C -0.08 -1.82 10.04 22.26 0.22 -1.59 16 15 C -0.15 -3.16 9.70 22.29 0.22 -2.94 16 16 C -0.05 -1.10 5.39 -19.88 -0.11 -1.21 16 17 C 0.11 1.96 5.81 85.56 0.50 2.45 16 18 N -0.70 -12.45 6.49 -517.94 -3.36 -15.81 16 19 C 0.06 0.86 5.69 86.30 0.49 1.35 16 20 C -0.11 -1.45 5.47 30.59 0.17 -1.28 16 21 C -0.10 -1.11 5.04 30.59 0.15 -0.95 16 22 C -0.11 -1.23 3.64 -10.27 -0.04 -1.27 16 23 C -0.14 -1.78 7.65 31.18 0.24 -1.54 16 24 C -0.15 -1.55 8.09 31.18 0.25 -1.30 16 25 C -0.14 -1.35 7.65 31.12 0.24 -1.11 16 26 C -0.15 -4.89 9.64 22.36 0.22 -4.67 16 27 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 28 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 29 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 30 H 0.06 2.55 7.68 -2.39 -0.02 2.53 16 31 H 0.06 2.52 7.65 -2.39 -0.02 2.50 16 32 H 0.13 3.91 6.30 -2.91 -0.02 3.89 16 33 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 34 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 35 H 0.06 0.86 8.08 -2.39 -0.02 0.84 16 36 H 0.08 1.48 8.08 -2.39 -0.02 1.46 16 37 H 0.35 5.58 8.72 -89.69 -0.78 4.80 16 38 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 43 H 0.06 0.71 7.87 -2.39 -0.02 0.69 16 44 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 45 H 0.08 1.00 7.92 -2.38 -0.02 0.98 16 46 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.07 0.68 8.14 -2.38 -0.02 0.67 16 49 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 50 H 0.08 0.77 8.10 -2.39 -0.02 0.75 16 51 H 0.12 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -67.30 413.21 2.20 -65.10 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.09 Total: 19.63 kcal Atomic # 6 Polarization: -45.65 SS G_CDS: 4.09 Total: -41.55 kcal Atomic # 7 Polarization: -69.77 SS G_CDS: -3.08 Total: -72.85 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.94 Total: -16.23 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -67.30 2.20 -65.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594978626.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.164 kcal (2) G-P(sol) polarization free energy of solvation -67.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds