Wall clock time and date at job start Tue Mar 31 2020 12:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46978 * 2 1 4 4 C 1.52994 * 109.47187 * 119.99693 * 2 1 3 5 5 C 1.53001 * 109.47393 * 174.68603 * 4 2 1 6 6 N 1.46897 * 115.55296 * 84.55340 * 5 4 2 7 7 C 1.46901 * 110.99593 * 40.22836 * 6 5 4 8 8 C 1.50707 * 109.46637 * 173.91739 * 7 6 5 9 9 C 1.38286 * 119.96979 * 90.00750 * 8 7 6 10 10 C 1.38245 * 120.10872 * 179.97438 * 9 8 7 11 11 C 1.38163 * 120.05932 * 359.97438 * 10 9 8 12 12 C 1.38718 * 119.94238 * 0.02562 * 11 10 9 13 13 O 1.35895 * 120.05832 * 180.02562 * 12 11 10 14 14 C 1.42908 * 116.99494 * 0.02562 * 13 12 11 15 15 C 1.53002 * 109.46724 * 179.97438 * 14 13 12 16 16 C 1.50693 * 109.47199 * 179.97438 * 15 14 13 17 17 H 1.08009 * 120.00074 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00588 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99468 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00656 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46918 * 59.99940 * 20 18 16 22 22 H 1.48499 * 109.47477 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46760 * 300.00206 * 20 18 16 24 24 C 1.38117 * 119.97124 * 269.72153 * 8 7 6 25 25 C 1.53010 * 117.49587 * 298.88852 * 5 4 2 26 26 C 1.53003 * 60.02858 * 252.47066 * 25 5 4 27 27 H 1.08998 * 109.47047 * 300.00208 * 1 2 3 28 28 H 1.09001 * 109.47063 * 59.99889 * 1 2 3 29 29 H 1.08998 * 109.47082 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47290 * 240.00138 * 2 1 3 31 31 H 1.09002 * 109.47238 * 184.01952 * 3 2 1 32 32 H 1.09006 * 109.47376 * 304.01220 * 3 2 1 33 33 H 1.08997 * 109.47338 * 64.01214 * 3 2 1 34 34 H 1.09003 * 109.47186 * 54.68736 * 4 2 1 35 35 H 1.08997 * 109.47172 * 294.68465 * 4 2 1 36 36 H 1.00896 * 111.00120 * 164.18429 * 6 5 4 37 37 H 1.08997 * 109.47427 * 293.91979 * 7 6 5 38 38 H 1.09002 * 109.46941 * 53.92165 * 7 6 5 39 39 H 1.07999 * 119.94481 * 359.97178 * 9 8 7 40 40 H 1.08008 * 119.97027 * 180.02562 * 10 9 8 41 41 H 1.08001 * 120.02905 * 180.02562 * 11 10 9 42 42 H 1.08997 * 109.47369 * 299.99559 * 14 13 12 43 43 H 1.08997 * 109.47174 * 60.00415 * 14 13 12 44 44 H 1.08998 * 109.47371 * 300.00552 * 15 14 13 45 45 H 1.09006 * 109.46769 * 60.00219 * 15 14 13 46 46 H 0.97002 * 119.99914 * 179.97438 * 19 18 16 47 47 H 1.07998 * 120.02921 * 0.02562 * 24 8 7 48 48 H 1.09004 * 117.49782 * 359.97296 * 25 5 4 49 49 H 1.08997 * 117.49716 * 144.97343 * 25 5 4 50 50 H 1.09002 * 117.49416 * 107.50040 * 26 25 5 51 51 H 1.08998 * 117.49867 * 252.52177 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5642 -0.8379 1.1843 6 7 4.3105 0.3313 1.6680 7 6 3.6845 0.8940 2.8720 8 6 4.5552 1.9934 3.4236 9 6 4.3727 3.2972 3.0004 10 6 5.1694 4.3081 3.5050 11 6 6.1500 4.0179 4.4341 12 6 6.3351 2.7108 4.8602 13 8 7.2985 2.4229 5.7743 14 6 8.0842 3.5156 6.2548 15 6 9.1078 3.0006 7.2687 16 6 9.9368 4.1527 7.7750 17 1 9.7517 5.1525 7.4104 18 6 10.9315 3.9308 8.7036 19 7 11.1565 2.7135 9.1479 20 14 11.9586 5.3591 9.3317 21 1 11.0730 6.3555 9.9859 22 1 12.9522 4.8593 10.3157 23 1 12.6666 5.9979 8.1934 24 6 5.5308 1.6988 4.3558 25 6 4.1633 -1.6248 0.0168 26 6 4.1791 -2.2185 1.4268 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1276 1.4434 -0.0720 32 1 1.6191 1.9767 -0.8519 33 1 1.7366 1.9352 0.9237 34 1 1.6011 -1.7177 1.2981 35 1 1.7565 -0.1553 2.1366 36 1 5.2772 0.0981 1.8384 37 1 2.7054 1.2993 2.6168 38 1 3.5695 0.1109 3.6215 39 1 3.6065 3.5261 2.2746 40 1 5.0247 5.3257 3.1732 41 1 6.7719 4.8081 4.8282 42 1 8.6040 3.9845 5.4194 43 1 7.4341 4.2470 6.7350 44 1 8.5878 2.5319 8.1041 45 1 9.7580 2.2690 6.7889 46 1 11.8565 2.5573 9.8009 47 1 5.6702 0.6810 4.6891 48 1 3.4715 -2.0596 -0.7047 49 1 5.1109 -1.2747 -0.3925 50 1 3.4978 -3.0440 1.6329 51 1 5.1371 -2.2587 1.9452 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595000487.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:52 Heat of formation + Delta-G solvation = -14.106889 kcal Electronic energy + Delta-G solvation = -25913.066008 eV Core-core repulsion = 22391.367662 eV Total energy + Delta-G solvation = -3521.698346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.99329 -39.33167 -37.31804 -35.36397 -33.96649 -33.35592 -30.90997 -30.24692 -29.11279 -27.71635 -27.27102 -25.56239 -24.73313 -22.76951 -22.29430 -21.69316 -20.97616 -20.16778 -19.08791 -17.69911 -16.60987 -16.30265 -15.95521 -15.61420 -15.40710 -15.32078 -14.79950 -14.57988 -14.50252 -14.00322 -13.94334 -13.62726 -13.23616 -12.91624 -12.70040 -12.63969 -12.41649 -12.35189 -12.25038 -11.90700 -11.80992 -11.61066 -11.40932 -11.33470 -11.28125 -11.01037 -10.87649 -10.85594 -10.70417 -10.51024 -10.45860 -10.30136 -9.86388 -9.67088 -9.32575 -8.80700 -8.45877 -8.34195 -7.84164 -6.11329 -4.16154 1.41964 1.69187 3.27939 3.32293 3.34014 3.44436 3.73685 3.85101 4.13054 4.36293 4.40145 4.47175 4.58163 4.77055 4.83377 4.86266 4.97827 5.01473 5.20416 5.24913 5.29737 5.33619 5.36382 5.40358 5.44094 5.50097 5.50450 5.57640 5.63442 5.65316 5.67151 5.74439 5.80856 5.83452 5.87229 5.95557 6.02287 6.05503 6.14382 6.18835 6.32871 6.54236 6.55632 6.69207 6.72290 6.81032 6.98546 7.13626 7.49111 7.62479 7.80134 8.05144 8.22592 8.89126 9.48126 11.00152 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.026001 B = 0.002055 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.608924 B =13624.634451 C =14355.138874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 C -0.147 4.147 4 C -0.079 4.079 5 C 0.060 3.940 6 N -0.641 5.641 7 C 0.101 3.899 8 C -0.054 4.054 9 C -0.148 4.148 10 C -0.081 4.081 11 C -0.210 4.210 12 C 0.145 3.855 13 O -0.317 6.317 14 C 0.065 3.935 15 C 0.026 3.974 16 C -0.527 4.527 17 H 0.058 0.942 18 C 0.060 3.940 19 N -0.889 5.889 20 Si 0.900 3.100 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.157 4.157 25 C -0.165 4.165 26 C -0.219 4.219 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.346 0.654 37 H 0.087 0.913 38 H 0.041 0.959 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.129 0.871 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.027 0.973 45 H 0.027 0.973 46 H 0.264 0.736 47 H 0.124 0.876 48 H 0.096 0.904 49 H 0.095 0.905 50 H 0.092 0.908 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.505 -6.116 -18.938 28.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 C -0.204 4.204 4 C -0.117 4.117 5 C -0.032 4.032 6 N -0.270 5.270 7 C -0.027 4.027 8 C -0.055 4.055 9 C -0.167 4.167 10 C -0.100 4.100 11 C -0.229 4.229 12 C 0.098 3.902 13 O -0.230 6.230 14 C -0.009 4.009 15 C -0.011 4.011 16 C -0.565 4.565 17 H 0.076 0.924 18 C -0.142 4.142 19 N -0.527 5.527 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.176 4.176 25 C -0.203 4.203 26 C -0.258 4.258 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.166 0.834 37 H 0.105 0.895 38 H 0.060 0.940 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.147 0.853 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.074 0.926 47 H 0.141 0.859 48 H 0.114 0.886 49 H 0.114 0.886 50 H 0.111 0.889 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.634 -5.944 -19.127 28.756 hybrid contribution 1.051 0.276 1.051 1.512 sum -19.583 -5.668 -18.075 27.245 Atomic orbital electron populations 1.21878 0.95708 1.01342 1.01751 1.21041 0.94760 0.97240 0.97692 1.21909 1.03264 0.94697 1.00578 1.21306 0.90591 1.00786 0.99027 1.21627 0.93340 0.86309 1.01947 1.60380 1.05696 1.28697 1.32231 1.20935 0.97235 0.94313 0.90238 1.19419 0.95822 0.94496 0.95746 1.20759 1.01679 0.92163 1.02080 1.20903 0.94446 0.99009 0.95601 1.21400 1.02617 0.96161 1.02706 1.19149 0.88915 0.92919 0.89217 1.86170 1.44304 1.38630 1.53877 1.23328 0.92417 0.87505 0.97609 1.19118 0.91924 0.97476 0.92631 1.20931 1.17258 0.93665 1.24691 0.92414 1.24996 0.97146 0.95925 0.96144 1.69970 1.32118 1.20000 1.30660 0.86537 0.79900 0.82181 0.78691 1.20093 1.21106 1.20082 1.20282 0.97712 0.98611 1.00983 1.23075 1.02940 1.02922 0.91393 1.23747 1.03235 0.98540 1.00307 0.92779 0.92765 0.93062 0.91362 0.90144 0.93856 0.93253 0.91558 0.90821 0.83410 0.89519 0.94048 0.86336 0.86188 0.85298 0.93128 0.93147 0.95427 0.95429 0.92646 0.85850 0.88601 0.88605 0.88915 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.19 37.16 0.34 -0.58 16 2 C -0.09 -0.62 2.84 -90.62 -0.26 -0.88 16 3 C -0.15 -1.15 8.21 37.16 0.31 -0.85 16 4 C -0.08 -0.57 4.46 -26.73 -0.12 -0.69 16 5 C 0.06 0.48 1.73 -131.56 -0.23 0.25 16 6 N -0.64 -5.91 5.29 -101.17 -0.53 -6.44 16 7 C 0.10 0.98 4.71 -4.97 -0.02 0.96 16 8 C -0.05 -0.67 5.33 -104.64 -0.56 -1.23 16 9 C -0.15 -1.79 9.70 -39.56 -0.38 -2.17 16 10 C -0.08 -1.06 10.04 -39.61 -0.40 -1.46 16 11 C -0.21 -3.28 9.04 -39.43 -0.36 -3.63 16 12 C 0.14 2.52 6.69 -39.21 -0.26 2.25 16 13 O -0.32 -6.54 10.14 -19.41 -0.20 -6.73 16 14 C 0.07 1.41 4.68 37.16 0.17 1.58 16 15 C 0.03 0.67 5.34 -27.89 -0.15 0.53 16 16 C -0.53 -14.72 9.11 -34.45 -0.31 -15.03 16 17 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 20 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 C -0.16 -2.32 9.64 -39.43 -0.38 -2.70 16 25 C -0.17 -1.26 9.60 -26.72 -0.26 -1.51 16 26 C -0.22 -1.72 9.90 -26.69 -0.26 -1.99 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.49 7.19 -51.93 -0.37 0.11 16 31 H 0.08 0.74 6.56 -51.93 -0.34 0.40 16 32 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.39 7.01 -51.93 -0.36 0.03 16 34 H 0.07 0.44 7.91 -51.93 -0.41 0.03 16 35 H 0.07 0.56 5.80 -51.93 -0.30 0.25 16 36 H 0.35 3.43 8.48 -39.29 -0.33 3.10 16 37 H 0.09 0.78 5.05 -51.93 -0.26 0.52 16 38 H 0.04 0.41 8.06 -51.93 -0.42 -0.01 16 39 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 41 H 0.13 1.99 6.30 -52.49 -0.33 1.66 16 42 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 43 H 0.05 1.03 7.66 -51.93 -0.40 0.64 16 44 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 47 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 48 H 0.10 0.65 7.66 -51.93 -0.40 0.25 16 49 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.09 0.67 8.06 -51.93 -0.42 0.26 16 51 H 0.09 0.78 8.12 -51.93 -0.42 0.36 16 LS Contribution 403.99 15.07 6.09 6.09 Total: -1.00 -29.28 403.99 -11.09 -40.37 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -8.94 Total: 1.73 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: -3.23 Total: -25.54 kcal Atomic # 7 Polarization: -32.38 SS G_CDS: 0.20 Total: -32.18 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.20 Total: -6.73 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -29.28 -11.09 -40.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595000487.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.263 kcal (2) G-P(sol) polarization free energy of solvation -29.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds