Wall clock time and date at job start Tue Mar 31 2020 11:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38284 * 119.96898 * 2 1 4 4 C 1.38247 * 120.11079 * 180.02562 * 3 2 1 5 5 C 1.38166 * 120.05256 * 359.97438 * 4 3 2 6 6 C 1.50706 * 120.02905 * 179.97438 * 5 4 3 7 7 C 1.38718 * 119.94647 * 0.02562 * 5 4 3 8 8 O 1.35893 * 120.05618 * 180.02562 * 7 5 4 9 9 C 1.42903 * 117.00147 * 179.97438 * 8 7 5 10 10 C 1.52994 * 109.47210 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47262 * 180.02562 * 10 9 8 12 12 N 1.46892 * 109.47390 * 179.97438 * 11 10 9 13 13 C 1.46842 * 111.00192 * 293.95474 * 12 11 10 14 14 C 1.53039 * 109.52666 * 185.84212 * 13 12 11 15 15 C 1.53123 * 109.27546 * 300.81951 * 14 13 12 16 16 C 1.53120 * 109.21163 * 57.62218 * 15 14 13 17 17 H 1.09000 * 109.50719 * 62.32149 * 16 15 14 18 18 C 1.50705 * 109.50009 * 182.43636 * 16 15 14 19 19 H 1.08003 * 119.99487 * 120.00018 * 18 16 15 20 20 C 1.37877 * 119.99919 * 299.99707 * 18 16 15 21 21 N 1.31505 * 120.00221 * 0.02562 * 20 18 16 22 22 Si 1.86803 * 119.99678 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47392 * 60.00109 * 22 20 18 24 24 H 1.48497 * 109.46878 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47180 * 300.00067 * 22 20 18 26 26 C 1.46848 * 110.99938 * 58.16403 * 12 11 10 27 27 C 1.38120 * 119.96911 * 180.26200 * 2 1 3 28 28 H 1.08998 * 109.47360 * 89.99749 * 1 2 3 29 29 H 1.09000 * 109.47020 * 209.99771 * 1 2 3 30 30 H 1.09000 * 109.46751 * 329.99336 * 1 2 3 31 31 H 1.07998 * 119.94855 * 0.02562 * 3 2 1 32 32 H 1.07992 * 119.97329 * 179.97438 * 4 3 2 33 33 H 1.08999 * 109.46616 * 270.02412 * 6 5 4 34 34 H 1.09002 * 109.46748 * 30.02005 * 6 5 4 35 35 H 1.08996 * 109.46973 * 150.02261 * 6 5 4 36 36 H 1.08992 * 109.46808 * 59.99846 * 9 8 7 37 37 H 1.09004 * 109.46913 * 300.00380 * 9 8 7 38 38 H 1.09001 * 109.47256 * 60.00400 * 10 9 8 39 39 H 1.08991 * 109.47606 * 299.99838 * 10 9 8 40 40 H 1.08997 * 109.47211 * 59.99509 * 11 10 9 41 41 H 1.09004 * 109.46865 * 300.00315 * 11 10 9 42 42 H 1.08997 * 109.46434 * 65.82550 * 13 12 11 43 43 H 1.09006 * 109.45199 * 305.85056 * 13 12 11 44 44 H 1.08999 * 109.50420 * 180.88146 * 14 13 12 45 45 H 1.09002 * 109.53427 * 60.77649 * 14 13 12 46 46 H 1.09002 * 109.52319 * 177.56011 * 15 14 13 47 47 H 1.08995 * 109.52318 * 297.68693 * 15 14 13 48 48 H 0.96996 * 120.00390 * 179.97438 * 21 20 18 49 49 H 1.08999 * 109.46555 * 294.17605 * 26 12 11 50 50 H 1.08998 * 109.46337 * 54.15813 * 26 12 11 51 51 H 1.07997 * 120.02983 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5803 1.2014 -0.0005 5 6 4.2752 0.0072 -0.0005 6 6 5.7822 0.0115 -0.0017 7 6 3.5845 -1.1959 -0.0005 8 8 4.2657 -2.3717 0.0000 9 6 3.4892 -3.5714 0.0005 10 6 4.4230 -4.7833 0.0017 11 6 3.5917 -6.0678 0.0016 12 7 4.4882 -7.2314 0.0022 13 6 5.2507 -7.3088 -1.2504 14 6 6.0621 -8.6061 -1.2759 15 6 7.0125 -8.6317 -0.0756 16 6 6.1983 -8.5003 1.2146 17 1 5.5243 -9.3518 1.3080 18 6 7.1318 -8.4645 2.3971 19 1 7.1406 -7.6060 3.0524 20 6 7.9746 -9.5278 2.6425 21 7 7.9642 -10.5729 1.8444 22 14 9.1312 -9.4837 4.1087 23 1 8.3406 -9.3566 5.3593 24 1 9.9258 -10.7375 4.1501 25 1 10.0472 -8.3217 3.9819 26 6 5.3818 -7.2067 1.1672 27 6 2.1970 -1.1965 -0.0055 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6565 2.1325 0.0004 32 1 4.1175 2.1382 -0.0010 33 1 6.1447 0.0125 -1.0297 34 1 6.1433 0.9026 0.5118 35 1 6.1485 -0.8774 0.5119 36 1 2.8605 -3.5975 -0.8894 37 1 2.8604 -3.5967 0.8905 38 1 5.0514 -4.7570 0.8919 39 1 5.0521 -4.7582 -0.8880 40 1 2.9635 -6.0939 -0.8887 41 1 2.9622 -6.0931 0.8912 42 1 5.9267 -6.4564 -1.3173 43 1 4.5627 -7.2940 -2.0957 44 1 6.6400 -8.6558 -2.1987 45 1 5.3863 -9.4598 -1.2232 46 1 7.5614 -9.5733 -0.0656 47 1 7.7147 -7.8014 -0.1492 48 1 8.5574 -11.3208 2.0167 49 1 6.0571 -6.3547 1.0889 50 1 4.7892 -7.1180 2.0777 51 1 1.6570 -2.1318 -0.0102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595611094.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:15 Heat of formation + Delta-G solvation = -52.273395 kcal Electronic energy + Delta-G solvation = -26355.200427 eV Core-core repulsion = 22831.847057 eV Total energy + Delta-G solvation = -3523.353370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.28925 -40.10841 -38.66509 -36.16037 -34.78133 -34.15918 -32.00095 -31.68692 -30.73210 -30.09230 -27.07902 -26.89492 -25.65824 -24.62320 -23.25300 -22.80221 -22.44195 -21.67644 -19.95352 -18.65652 -18.31633 -17.30435 -17.16326 -16.77922 -16.46616 -16.09944 -15.83983 -15.38947 -15.23533 -15.08253 -14.71928 -14.52882 -14.47054 -14.11090 -14.06978 -13.79341 -13.74810 -13.48983 -13.33879 -13.10381 -12.87480 -12.76498 -12.72056 -12.58336 -12.48289 -12.42416 -12.18532 -11.99374 -11.78662 -11.73238 -11.69253 -11.38316 -11.36593 -10.86584 -10.66705 -10.38038 -9.65807 -9.12892 -9.00688 -8.08387 -6.22533 0.34498 0.48720 1.40413 1.41617 1.49268 2.19726 2.42099 2.75903 3.13863 3.18300 3.77086 3.82731 3.84851 3.99331 4.11670 4.15195 4.21052 4.26147 4.28133 4.29815 4.33607 4.43122 4.50194 4.64674 4.65314 4.68760 4.72641 4.76474 4.77182 4.80178 4.83387 4.89016 4.90315 4.92709 5.06226 5.09803 5.15140 5.18112 5.24652 5.35723 5.39206 5.40400 5.52444 5.54008 5.62930 5.65951 5.91968 5.96145 6.11947 6.20556 6.35012 6.45384 6.48299 6.89967 7.45147 8.96027 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017247 B = 0.002417 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.081542 B =11579.659819 C =12302.043520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.062 4.062 3 C -0.162 4.162 4 C -0.084 4.084 5 C -0.148 4.148 6 C -0.102 4.102 7 C 0.110 3.890 8 O -0.333 6.333 9 C 0.071 3.929 10 C -0.149 4.149 11 C 0.064 3.936 12 N -0.544 5.544 13 C 0.063 3.937 14 C -0.112 4.112 15 C -0.105 4.105 16 C 0.051 3.949 17 H -0.004 1.004 18 C -0.537 4.537 19 H 0.049 0.951 20 C 0.014 3.986 21 N -0.915 5.915 22 Si 0.952 3.048 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.273 1.273 26 C 0.081 3.919 27 C -0.218 4.218 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.028 0.972 43 H 0.091 0.909 44 H 0.068 0.932 45 H 0.051 0.949 46 H 0.057 0.943 47 H 0.019 0.981 48 H 0.260 0.740 49 H 0.019 0.981 50 H 0.054 0.946 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.867 22.722 -7.288 27.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.062 4.062 3 C -0.180 4.180 4 C -0.101 4.101 5 C -0.148 4.148 6 C -0.159 4.159 7 C 0.065 3.935 8 O -0.247 6.247 9 C -0.005 4.005 10 C -0.188 4.188 11 C -0.064 4.064 12 N -0.267 5.267 13 C -0.064 4.064 14 C -0.150 4.150 15 C -0.143 4.143 16 C 0.033 3.967 17 H 0.014 0.986 18 C -0.576 4.576 19 H 0.068 0.932 20 C -0.185 4.185 21 N -0.554 5.554 22 Si 0.778 3.222 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.198 1.198 26 C -0.047 4.047 27 C -0.237 4.237 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.164 0.836 32 H 0.167 0.833 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.115 0.885 41 H 0.099 0.901 42 H 0.046 0.954 43 H 0.110 0.890 44 H 0.087 0.913 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.038 0.962 48 H 0.070 0.930 49 H 0.037 0.963 50 H 0.073 0.927 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.869 22.054 -7.279 27.050 hybrid contribution 1.381 0.078 0.891 1.646 sum -12.488 22.132 -6.387 26.203 Atomic orbital electron populations 1.20859 0.89130 1.03746 1.03271 1.20079 0.97498 0.92257 0.96377 1.21263 0.94116 0.98372 1.04260 1.21168 0.94517 0.97002 0.97453 1.19593 0.97182 0.90926 1.07131 1.20581 0.90289 1.02679 1.02354 1.19156 0.91163 0.85806 0.97392 1.86052 1.37014 1.13005 1.88614 1.22771 0.93947 0.81387 1.02373 1.22170 0.99672 0.94309 1.02692 1.22173 0.94948 0.85337 1.03986 1.62196 1.21804 1.39905 1.02772 1.22067 0.95944 0.96465 0.91947 1.21598 0.97791 0.97579 0.98007 1.21465 0.97508 1.00339 0.94991 1.18600 0.92741 0.92211 0.93197 0.98565 1.21490 1.21533 1.03004 1.11553 0.93247 1.25709 0.98653 0.95109 0.98991 1.70018 1.39335 1.07321 1.38719 0.85703 0.79018 0.77362 0.80118 1.19623 1.20805 1.19818 1.21972 0.93373 0.97503 0.91830 1.21336 0.92438 1.00073 1.09829 0.90056 0.91149 0.90037 0.83618 0.83265 0.91270 0.90049 0.93019 0.90354 0.91220 0.92648 0.91534 0.88455 0.90088 0.95423 0.89047 0.91309 0.92990 0.92413 0.96189 0.93039 0.96322 0.92716 0.84547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.01 71.24 0.71 -0.54 16 2 C -0.06 -1.06 5.88 -19.88 -0.12 -1.18 16 3 C -0.16 -2.58 9.70 22.28 0.22 -2.36 16 4 C -0.08 -1.46 9.70 22.25 0.22 -1.24 16 5 C -0.15 -3.28 5.89 -19.76 -0.12 -3.40 16 6 C -0.10 -2.08 9.79 71.24 0.70 -1.38 16 7 C 0.11 2.69 6.66 22.51 0.15 2.84 16 8 O -0.33 -8.94 9.18 -92.35 -0.85 -9.79 16 9 C 0.07 1.56 4.74 71.98 0.34 1.90 16 10 C -0.15 -3.90 4.89 30.59 0.15 -3.76 16 11 C 0.06 1.65 5.36 86.31 0.46 2.12 16 12 N -0.54 -19.08 4.86 -896.36 -4.36 -23.43 16 13 C 0.06 2.09 5.05 86.33 0.44 2.52 16 14 C -0.11 -4.33 6.10 30.65 0.19 -4.14 16 15 C -0.10 -5.13 5.02 30.68 0.15 -4.98 16 16 C 0.05 2.67 2.27 -11.48 -0.03 2.64 16 17 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 18 C -0.54 -30.46 8.57 25.60 0.22 -30.25 16 19 H 0.05 2.75 7.75 -2.91 -0.02 2.73 16 20 C 0.01 0.80 5.30 84.66 0.45 1.25 16 21 N -0.91 -53.95 11.35 21.45 0.24 -53.71 16 22 Si 0.95 44.51 29.54 68.60 2.03 46.54 16 23 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 25 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 26 C 0.08 3.45 4.06 86.33 0.35 3.80 16 27 C -0.22 -4.48 8.69 22.37 0.19 -4.28 16 28 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16 30 H 0.08 0.68 8.08 -2.39 -0.02 0.66 16 31 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 32 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 1.28 8.09 -2.39 -0.02 1.27 16 35 H 0.05 1.24 7.53 -2.39 -0.02 1.22 16 36 H 0.08 1.43 7.65 -2.39 -0.02 1.41 16 37 H 0.07 1.40 7.67 -2.38 -0.02 1.39 16 38 H 0.05 1.73 6.51 -2.39 -0.02 1.71 16 39 H 0.07 1.83 6.68 -2.39 -0.02 1.81 16 40 H 0.10 2.03 8.06 -2.39 -0.02 2.01 16 41 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 42 H 0.03 0.92 6.75 -2.39 -0.02 0.90 16 43 H 0.09 2.44 8.06 -2.38 -0.02 2.42 16 44 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.06 3.19 6.15 -2.39 -0.01 3.18 16 47 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 49 H 0.02 0.81 6.61 -2.39 -0.02 0.80 16 50 H 0.05 2.33 8.12 -2.39 -0.02 2.31 16 51 H 0.14 2.39 6.30 -2.91 -0.02 2.37 16 Total: -1.00 -65.86 393.43 2.62 -63.24 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.88 Total: 17.57 kcal Atomic # 6 Polarization: -45.10 SS G_CDS: 4.68 Total: -40.42 kcal Atomic # 7 Polarization: -73.03 SS G_CDS: -4.11 Total: -77.14 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.85 Total: -9.79 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -65.86 2.62 -63.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595611094.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.967 kcal (2) G-P(sol) polarization free energy of solvation -65.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds