Wall clock time and date at job start Tue Mar 31 2020 11:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38270 * 119.96938 * 2 1 4 4 C 1.38274 * 120.10908 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.96948 * 180.02562 * 4 3 2 6 6 C 1.38136 * 120.05589 * 359.97438 * 4 3 2 7 7 C 1.38740 * 119.94566 * 0.02562 * 6 4 3 8 8 O 1.35893 * 120.05552 * 180.02562 * 7 6 4 9 9 C 1.42903 * 117.00147 * 179.97438 * 8 7 6 10 10 C 1.52994 * 109.47210 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47262 * 180.02562 * 10 9 8 12 12 N 1.46892 * 109.47390 * 179.97438 * 11 10 9 13 13 C 1.46842 * 111.00192 * 293.95474 * 12 11 10 14 14 C 1.53039 * 109.52666 * 185.84212 * 13 12 11 15 15 C 1.53123 * 109.27546 * 300.81951 * 14 13 12 16 16 C 1.53120 * 109.21163 * 57.62218 * 15 14 13 17 17 H 1.09000 * 109.50719 * 62.32149 * 16 15 14 18 18 C 1.50705 * 109.50009 * 182.43636 * 16 15 14 19 19 H 1.08003 * 119.99487 * 120.00018 * 18 16 15 20 20 C 1.37877 * 119.99919 * 299.99707 * 18 16 15 21 21 N 1.31505 * 120.00221 * 0.02562 * 20 18 16 22 22 Si 1.86803 * 119.99678 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47392 * 60.00109 * 22 20 18 24 24 H 1.48497 * 109.46878 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47180 * 300.00067 * 22 20 18 26 26 C 1.46848 * 110.99938 * 58.16403 * 12 11 10 27 27 C 1.38140 * 119.97414 * 180.28391 * 2 1 3 28 28 H 1.08998 * 109.47521 * 89.99648 * 1 2 3 29 29 H 1.09000 * 109.46971 * 210.00126 * 1 2 3 30 30 H 1.09001 * 109.46957 * 329.99403 * 1 2 3 31 31 H 1.07998 * 119.94708 * 0.02672 * 3 2 1 32 32 H 1.09005 * 109.46891 * 269.97849 * 5 4 3 33 33 H 1.08999 * 109.47347 * 29.97432 * 5 4 3 34 34 H 1.09001 * 109.47409 * 149.97983 * 5 4 3 35 35 H 1.08000 * 120.02934 * 179.97438 * 6 4 3 36 36 H 1.08992 * 109.46808 * 59.99846 * 9 8 7 37 37 H 1.09004 * 109.46913 * 300.00380 * 9 8 7 38 38 H 1.09001 * 109.47256 * 60.00400 * 10 9 8 39 39 H 1.08991 * 109.47606 * 299.99838 * 10 9 8 40 40 H 1.08997 * 109.47211 * 59.99509 * 11 10 9 41 41 H 1.09004 * 109.46865 * 300.00315 * 11 10 9 42 42 H 1.08997 * 109.46434 * 65.82550 * 13 12 11 43 43 H 1.09006 * 109.45199 * 305.85056 * 13 12 11 44 44 H 1.08999 * 109.50420 * 180.88146 * 14 13 12 45 45 H 1.09002 * 109.53427 * 60.77649 * 14 13 12 46 46 H 1.09002 * 109.52319 * 177.56011 * 15 14 13 47 47 H 1.08995 * 109.52318 * 297.68693 * 15 14 13 48 48 H 0.96996 * 120.00390 * 179.97438 * 21 20 18 49 49 H 1.08999 * 109.46555 * 294.17605 * 26 12 11 50 50 H 1.08998 * 109.46337 * 54.15813 * 26 12 11 51 51 H 1.08000 * 120.03065 * 359.96843 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1978 0.0000 4 6 3.5804 1.2012 -0.0005 5 6 4.3300 2.5085 0.0001 6 6 4.2752 0.0073 -0.0005 7 6 3.5845 -1.1960 -0.0005 8 8 4.2657 -2.3718 0.0000 9 6 3.4892 -3.5715 0.0005 10 6 4.4230 -4.7834 0.0017 11 6 3.5917 -6.0679 0.0016 12 7 4.4882 -7.2315 0.0022 13 6 5.2508 -7.3088 -1.2504 14 6 6.0622 -8.6062 -1.2759 15 6 7.0125 -8.6317 -0.0756 16 6 6.1983 -8.5003 1.2146 17 1 5.5244 -9.3519 1.3080 18 6 7.1319 -8.4646 2.3971 19 1 7.1406 -7.6061 3.0524 20 6 7.9747 -9.5278 2.6425 21 7 7.9643 -10.5729 1.8444 22 14 9.1313 -9.4837 4.1087 23 1 8.3407 -9.3566 5.3593 24 1 9.9259 -10.7375 4.1501 25 1 10.0472 -8.3217 3.9819 26 6 5.3818 -7.2067 1.1672 27 6 2.1971 -1.1966 -0.0059 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.6563 2.1323 0.0004 32 1 4.5107 2.8242 -1.0275 33 1 3.7387 3.2662 0.5142 34 1 5.2829 2.3808 0.5137 35 1 5.3552 0.0104 -0.0014 36 1 2.8605 -3.5976 -0.8894 37 1 2.8604 -3.5968 0.8905 38 1 5.0514 -4.7570 0.8919 39 1 5.0521 -4.7583 -0.8880 40 1 2.9635 -6.0940 -0.8887 41 1 2.9622 -6.0932 0.8912 42 1 5.9267 -6.4564 -1.3173 43 1 4.5627 -7.2941 -2.0957 44 1 6.6401 -8.6558 -2.1987 45 1 5.3864 -9.4598 -1.2232 46 1 7.5615 -9.5733 -0.0656 47 1 7.7148 -7.8014 -0.1492 48 1 8.5575 -11.3208 2.0167 49 1 6.0571 -6.3547 1.0889 50 1 4.7892 -7.1180 2.0777 51 1 1.6572 -2.1320 -0.0100 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595612220.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:21 Heat of formation + Delta-G solvation = -38.505194 kcal Electronic energy + Delta-G solvation = -26094.517348 eV Core-core repulsion = 22571.761012 eV Total energy + Delta-G solvation = -3522.756336 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.41089 -38.69139 -37.90263 -34.53425 -33.81577 -32.58446 -31.32188 -30.10080 -29.82090 -27.51270 -27.19126 -25.47348 -24.93565 -23.08705 -21.90981 -21.52746 -20.92601 -20.57589 -18.31771 -17.65405 -16.52685 -16.33168 -16.20903 -16.16438 -15.02535 -14.64080 -14.36725 -14.15307 -14.06538 -14.04659 -13.61271 -13.52181 -13.34173 -13.15833 -12.95858 -12.82461 -12.43706 -12.34210 -12.10618 -11.93020 -11.79731 -11.69455 -11.55853 -11.36720 -11.05830 -10.90654 -10.89448 -10.76580 -10.65194 -10.37908 -10.02533 -9.79861 -9.45208 -9.03183 -8.86169 -8.69607 -8.31667 -8.28551 -7.66871 -5.95496 -4.01679 1.08306 1.25274 3.05480 3.33694 3.38255 3.40898 3.49807 4.39562 4.45966 4.50464 4.57638 4.80762 4.82820 4.93756 4.95499 5.06403 5.09311 5.24674 5.26594 5.32390 5.33118 5.34354 5.35395 5.37054 5.48216 5.57022 5.64957 5.68822 5.80575 5.83437 5.91652 5.99914 6.08738 6.12755 6.27476 6.28072 6.33077 6.38288 6.44275 6.52717 6.61093 6.73019 6.77707 6.98391 7.23096 7.31316 7.41294 7.65058 7.76281 7.81767 8.10052 8.19340 8.49932 9.02117 9.62499 11.10451 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017306 B = 0.002279 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.512938 B =12284.216362 C =13081.770135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.045 4.045 3 C -0.165 4.165 4 C -0.046 4.046 5 C -0.114 4.114 6 C -0.162 4.162 7 C 0.143 3.857 8 O -0.314 6.314 9 C 0.066 3.934 10 C -0.160 4.160 11 C 0.061 3.939 12 N -0.533 5.533 13 C 0.059 3.941 14 C -0.118 4.118 15 C -0.111 4.111 16 C 0.054 3.946 17 H 0.033 0.967 18 C -0.515 4.515 19 H 0.052 0.948 20 C 0.063 3.937 21 N -0.889 5.889 22 Si 0.890 3.110 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.278 1.278 26 C 0.063 3.937 27 C -0.217 4.217 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.129 0.871 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.027 0.973 43 H 0.057 0.943 44 H 0.046 0.954 45 H 0.060 0.940 46 H 0.091 0.909 47 H 0.029 0.971 48 H 0.260 0.740 49 H 0.025 0.975 50 H 0.058 0.942 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.797 21.444 -6.704 25.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.045 4.045 3 C -0.183 4.183 4 C -0.046 4.046 5 C -0.171 4.171 6 C -0.181 4.181 7 C 0.097 3.903 8 O -0.227 6.227 9 C -0.009 4.009 10 C -0.199 4.199 11 C -0.068 4.068 12 N -0.255 5.255 13 C -0.069 4.069 14 C -0.156 4.156 15 C -0.149 4.149 16 C 0.036 3.964 17 H 0.051 0.949 18 C -0.554 4.554 19 H 0.071 0.929 20 C -0.138 4.138 21 N -0.527 5.527 22 Si 0.718 3.282 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.204 1.204 26 C -0.064 4.064 27 C -0.236 4.236 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.139 0.861 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.147 0.853 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.045 0.955 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.079 0.921 46 H 0.109 0.891 47 H 0.048 0.952 48 H 0.070 0.930 49 H 0.043 0.957 50 H 0.077 0.923 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.785 20.765 -6.690 25.287 hybrid contribution 0.990 0.650 0.717 1.385 sum -11.795 21.414 -5.973 25.167 Atomic orbital electron populations 1.20817 0.91049 1.02905 1.02458 1.19680 0.95926 0.92471 0.96402 1.20774 0.93405 0.97439 1.06675 1.19667 0.93618 0.94563 0.96723 1.20804 1.00065 0.93698 1.02521 1.20299 1.00280 0.89351 1.08166 1.19016 0.90472 0.86161 0.94642 1.86116 1.36180 1.12383 1.88026 1.22830 0.94536 0.82422 1.01137 1.22355 0.99855 0.93366 1.04350 1.22096 0.95672 0.86892 1.02156 1.62278 1.22283 1.37305 1.03665 1.22071 0.95463 0.98103 0.91236 1.21682 0.98359 0.96343 0.99198 1.21656 0.97187 1.02701 0.93374 1.18667 0.93076 0.91540 0.93155 0.94856 1.21107 1.20753 1.02946 1.10546 0.92925 1.24928 0.97120 0.95425 0.96351 1.69873 1.38690 1.06852 1.37316 0.86696 0.80999 0.77203 0.83305 1.20307 1.21322 1.20384 1.22364 0.93486 1.00208 0.90307 1.21133 0.92986 0.98943 1.10496 0.90968 0.91420 0.91375 0.86140 0.90922 0.91361 0.91266 0.85316 0.92168 0.91972 0.90078 0.90825 0.91332 0.90848 0.95496 0.92482 0.93545 0.92115 0.89094 0.95184 0.93013 0.95716 0.92310 0.85466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 10.01 36.01 0.36 -0.43 16 2 C -0.04 -0.43 5.88 -104.65 -0.62 -1.05 16 3 C -0.16 -1.53 9.35 -39.56 -0.37 -1.90 16 4 C -0.05 -0.45 5.88 -104.65 -0.62 -1.06 16 5 C -0.11 -0.79 10.01 36.00 0.36 -0.43 16 6 C -0.16 -1.88 9.64 -39.43 -0.38 -2.26 16 7 C 0.14 1.80 6.69 -39.21 -0.26 1.54 16 8 O -0.31 -4.33 10.14 -19.40 -0.20 -4.53 16 9 C 0.07 0.78 4.74 37.15 0.18 0.96 16 10 C -0.16 -2.19 4.89 -26.73 -0.13 -2.32 16 11 C 0.06 0.86 5.36 -3.83 -0.02 0.84 16 12 N -0.53 -9.64 4.86 -234.67 -1.14 -10.78 16 13 C 0.06 1.03 5.05 -3.84 -0.02 1.01 16 14 C -0.12 -2.31 6.10 -26.65 -0.16 -2.47 16 15 C -0.11 -2.64 5.02 -26.61 -0.13 -2.78 16 16 C 0.05 1.37 2.27 -91.68 -0.21 1.16 16 17 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 18 C -0.51 -14.17 8.57 -34.44 -0.30 -14.47 16 19 H 0.05 1.43 7.75 -52.48 -0.41 1.02 16 20 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 21 N -0.89 -25.45 11.35 55.43 0.63 -24.82 16 22 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.06 1.33 4.06 -3.83 -0.02 1.31 16 27 C -0.22 -2.38 8.69 -39.43 -0.34 -2.72 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 30 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 34 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 35 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 36 H 0.06 0.62 7.65 -51.93 -0.40 0.22 16 37 H 0.06 0.67 7.67 -51.93 -0.40 0.27 16 38 H 0.08 1.26 6.51 -51.93 -0.34 0.93 16 39 H 0.07 1.06 6.68 -51.93 -0.35 0.71 16 40 H 0.07 0.84 8.06 -51.93 -0.42 0.43 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.03 0.47 6.75 -51.93 -0.35 0.12 16 43 H 0.06 0.87 8.06 -51.93 -0.42 0.45 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 46 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 47 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 49 H 0.02 0.53 6.61 -51.93 -0.34 0.18 16 50 H 0.06 1.23 8.12 -51.93 -0.42 0.81 16 51 H 0.13 1.23 6.30 -52.49 -0.33 0.90 16 LS Contribution 394.76 15.07 5.95 5.95 Total: -1.00 -29.55 394.76 -11.66 -41.21 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -9.11 Total: 0.01 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: -2.77 Total: -23.42 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: -0.51 Total: -35.60 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.20 Total: -4.53 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.55 -11.66 -41.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595612220.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.704 kcal (2) G-P(sol) polarization free energy of solvation -29.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds