Wall clock time and date at job start Tue Mar 31 2020 11:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38270 * 119.96960 * 2 1 4 4 C 1.38262 * 120.11021 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.97362 * 179.97438 * 4 3 2 6 6 C 1.38149 * 120.05620 * 359.97438 * 4 3 2 7 7 C 1.38735 * 119.94321 * 359.97438 * 6 4 3 8 8 O 1.35898 * 120.05175 * 180.02562 * 7 6 4 9 9 C 1.42901 * 116.99797 * 179.97438 * 8 7 6 10 10 C 1.52991 * 109.47333 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.47329 * 179.97438 * 10 9 8 12 12 N 1.46895 * 109.47187 * 179.97438 * 11 10 9 13 13 C 1.46846 * 111.00414 * 293.95708 * 12 11 10 14 14 C 1.53035 * 109.52651 * 174.16061 * 13 12 11 15 15 C 1.53115 * 109.27873 * 59.18030 * 14 13 12 16 16 C 1.53117 * 109.21374 * 302.31444 * 15 14 13 17 17 H 1.09006 * 109.50760 * 297.74777 * 16 15 14 18 18 C 1.50699 * 109.50773 * 177.62716 * 16 15 14 19 19 H 1.08005 * 120.00004 * 275.20247 * 18 16 15 20 20 C 1.37880 * 120.00338 * 95.20106 * 18 16 15 21 21 N 1.31509 * 120.00119 * 185.49238 * 20 18 16 22 22 Si 1.86798 * 119.99617 * 5.49067 * 20 18 16 23 23 H 1.48504 * 109.47033 * 84.78274 * 22 20 18 24 24 H 1.48498 * 109.47287 * 204.78423 * 22 20 18 25 25 H 1.48498 * 109.47286 * 324.78309 * 22 20 18 26 26 C 1.46854 * 111.00066 * 169.74828 * 12 11 10 27 27 C 1.38144 * 119.97077 * 180.23106 * 2 1 3 28 28 H 1.08997 * 109.46789 * 89.99775 * 1 2 3 29 29 H 1.08993 * 109.47020 * 209.99875 * 1 2 3 30 30 H 1.09003 * 109.46976 * 330.00126 * 1 2 3 31 31 H 1.07997 * 119.94763 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.46940 * 269.98489 * 5 4 3 33 33 H 1.08997 * 109.46845 * 29.98310 * 5 4 3 34 34 H 1.08996 * 109.47241 * 149.97904 * 5 4 3 35 35 H 1.07999 * 120.02530 * 179.97438 * 6 4 3 36 36 H 1.09009 * 109.47171 * 59.99619 * 9 8 7 37 37 H 1.09003 * 109.47410 * 300.00595 * 9 8 7 38 38 H 1.09000 * 109.47205 * 60.00386 * 10 9 8 39 39 H 1.08997 * 109.47452 * 299.99983 * 10 9 8 40 40 H 1.09009 * 109.46534 * 60.00336 * 11 10 9 41 41 H 1.08997 * 109.47108 * 300.00523 * 11 10 9 42 42 H 1.09001 * 109.46067 * 54.14281 * 13 12 11 43 43 H 1.09000 * 109.45534 * 294.17261 * 13 12 11 44 44 H 1.09007 * 109.49944 * 299.24038 * 14 13 12 45 45 H 1.08998 * 109.53813 * 179.14515 * 14 13 12 46 46 H 1.08999 * 109.52663 * 62.25016 * 15 14 13 47 47 H 1.08997 * 109.52659 * 182.38088 * 15 14 13 48 48 H 0.97001 * 119.99915 * 179.97438 * 21 20 18 49 49 H 1.09000 * 109.45909 * 305.85622 * 26 12 11 50 50 H 1.09000 * 109.46146 * 65.83162 * 26 12 11 51 51 H 1.07993 * 120.03181 * 0.02667 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1978 0.0000 4 6 3.5804 1.2012 0.0005 5 6 4.3301 2.5085 -0.0001 6 6 4.2752 0.0072 0.0016 7 6 3.5845 -1.1960 0.0027 8 8 4.2658 -2.3719 0.0043 9 6 3.4893 -3.5715 0.0059 10 6 4.4230 -4.7834 0.0069 11 6 3.5916 -6.0679 0.0092 12 7 4.4882 -7.2315 0.0095 13 6 5.2490 -7.3101 -1.2440 14 6 6.2730 -8.4436 -1.1506 15 6 5.5429 -9.7643 -0.8913 16 6 4.7202 -9.6412 0.3942 17 1 5.3870 -9.4595 1.2371 18 6 3.9530 -10.9177 0.6247 19 1 2.9963 -11.0666 0.1462 20 6 4.4724 -11.8954 1.4465 21 7 3.8570 -13.0518 1.5629 22 14 6.0503 -11.5775 2.3944 23 1 5.7325 -10.8737 3.6628 24 1 6.7141 -12.8705 2.6986 25 1 6.9587 -10.7354 1.5753 26 6 3.7410 -8.4715 0.2558 27 6 2.1971 -1.1967 -0.0048 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6564 2.1323 -0.0004 32 1 4.5114 2.8229 -1.0279 33 1 3.7384 3.2668 0.5128 34 1 5.2825 2.3814 0.5145 35 1 5.3552 0.0104 0.0016 36 1 2.8604 -3.5985 -0.8841 37 1 2.8604 -3.5961 0.8958 38 1 5.0521 -4.7567 0.8966 39 1 5.0515 -4.7587 -0.8834 40 1 2.9622 -6.0948 -0.8804 41 1 2.9634 -6.0924 0.8996 42 1 5.7667 -6.3661 -1.4144 43 1 4.5665 -7.5045 -2.0713 44 1 6.9642 -8.2430 -0.3320 45 1 6.8274 -8.5119 -2.0866 46 1 4.8802 -9.9847 -1.7282 47 1 6.2713 -10.5678 -0.7820 48 1 4.2226 -13.7398 2.1408 49 1 3.1634 -8.3711 1.1747 50 1 3.0658 -8.6604 -0.5788 51 1 1.6572 -2.1320 -0.0090 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595612222.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:24 Heat of formation + Delta-G solvation = -39.406807 kcal Electronic energy + Delta-G solvation = -25796.865330 eV Core-core repulsion = 22274.069897 eV Total energy + Delta-G solvation = -3522.795433 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.46832 -38.65810 -38.02018 -34.66353 -33.86141 -32.62009 -31.59453 -30.50130 -30.20621 -27.56498 -27.29266 -25.67172 -25.04611 -22.83844 -21.98286 -21.80334 -20.87534 -20.31297 -18.77427 -17.72372 -16.89153 -16.45598 -16.42765 -16.22464 -15.38925 -14.77386 -14.34901 -14.20606 -14.18233 -13.84193 -13.77053 -13.56015 -13.39654 -13.25718 -13.06194 -12.87070 -12.75033 -12.49988 -12.25318 -12.12770 -11.89501 -11.83351 -11.60605 -11.49848 -11.16176 -11.04953 -10.99871 -10.89718 -10.68707 -10.47930 -10.18501 -9.80801 -9.52920 -9.28554 -8.93210 -8.91294 -8.49080 -8.37881 -7.83790 -6.06938 -4.06276 1.03019 1.19636 2.93988 3.33017 3.40651 3.44389 3.45194 4.30878 4.41477 4.45122 4.47717 4.75482 4.77403 4.89532 4.93602 5.01984 5.03722 5.12076 5.21985 5.22844 5.26862 5.28086 5.28698 5.36023 5.42469 5.51771 5.53936 5.59435 5.63003 5.69855 5.86708 5.87246 5.98822 6.05368 6.06134 6.19241 6.21663 6.22731 6.33060 6.33493 6.41241 6.51635 6.55314 6.68520 6.83965 6.92534 7.23716 7.31064 7.46875 7.58139 7.61241 7.87464 8.53659 8.97656 9.56977 11.06198 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.024299 B = 0.002038 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.026166 B =13738.221860 C =14132.233919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.044 4.044 3 C -0.164 4.164 4 C -0.046 4.046 5 C -0.114 4.114 6 C -0.162 4.162 7 C 0.142 3.858 8 O -0.313 6.313 9 C 0.062 3.938 10 C -0.115 4.115 11 C 0.060 3.940 12 N -0.542 5.542 13 C 0.059 3.941 14 C -0.121 4.121 15 C -0.112 4.112 16 C 0.020 3.980 17 H 0.039 0.961 18 C -0.513 4.513 19 H 0.070 0.930 20 C 0.071 3.929 21 N -0.901 5.901 22 Si 0.879 3.121 23 H -0.276 1.276 24 H -0.292 1.292 25 H -0.263 1.263 26 C 0.072 3.928 27 C -0.216 4.216 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.121 0.879 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.129 0.871 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.030 0.970 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.026 0.974 44 H 0.061 0.939 45 H 0.052 0.948 46 H 0.049 0.951 47 H 0.052 0.948 48 H 0.263 0.737 49 H 0.067 0.933 50 H 0.024 0.976 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.078 29.264 -4.525 29.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.044 4.044 3 C -0.182 4.182 4 C -0.046 4.046 5 C -0.171 4.171 6 C -0.181 4.181 7 C 0.097 3.903 8 O -0.227 6.227 9 C -0.014 4.014 10 C -0.153 4.153 11 C -0.069 4.069 12 N -0.266 5.266 13 C -0.069 4.069 14 C -0.159 4.159 15 C -0.151 4.151 16 C 0.001 3.999 17 H 0.058 0.942 18 C -0.551 4.551 19 H 0.088 0.912 20 C -0.130 4.130 21 N -0.539 5.539 22 Si 0.707 3.293 23 H -0.202 1.202 24 H -0.218 1.218 25 H -0.187 1.187 26 C -0.054 4.054 27 C -0.235 4.235 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.139 0.861 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.147 0.853 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.048 0.952 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.044 0.956 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.073 0.927 49 H 0.086 0.914 50 H 0.042 0.958 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.541 29.075 -4.050 29.396 hybrid contribution -0.053 -0.255 -0.145 0.298 sum -1.593 28.820 -4.195 29.167 Atomic orbital electron populations 1.20826 0.91009 1.02958 1.02523 1.19694 0.95971 0.92462 0.96265 1.20784 0.93423 0.97470 1.06546 1.19669 0.93615 0.94571 0.96739 1.20803 1.00035 0.93709 1.02534 1.20279 1.00219 0.89315 1.08269 1.18991 0.90451 0.86060 0.94835 1.86072 1.36090 1.12349 1.88146 1.22832 0.94576 0.82586 1.01363 1.21555 0.98446 0.90957 1.04364 1.21895 0.94234 0.89944 1.00795 1.61989 1.27012 1.03320 1.34323 1.22065 0.96067 0.98688 0.90048 1.21683 0.97608 0.96070 1.00493 1.21866 0.98587 0.94468 1.00141 1.19181 0.93831 0.92992 0.93894 0.94240 1.20952 1.06426 0.98989 1.28715 0.91156 1.25057 0.96925 0.94757 0.96297 1.69913 1.40334 1.04878 1.38791 0.86821 0.84334 0.77296 0.80870 1.20183 1.21827 1.18748 1.22298 0.95823 0.87884 0.99426 1.21148 0.93008 0.98987 1.10361 0.90923 0.91373 0.91341 0.86112 0.90911 0.91349 0.91289 0.85323 0.92150 0.91841 0.89916 0.90833 0.95200 0.90693 0.91737 0.95553 0.91984 0.92920 0.93266 0.92959 0.92690 0.91425 0.95784 0.85434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 10.01 36.01 0.36 -0.41 16 2 C -0.04 -0.40 5.88 -104.64 -0.62 -1.02 16 3 C -0.16 -1.42 9.35 -39.56 -0.37 -1.79 16 4 C -0.05 -0.41 5.88 -104.64 -0.62 -1.02 16 5 C -0.11 -0.69 10.01 36.01 0.36 -0.33 16 6 C -0.16 -1.69 9.64 -39.43 -0.38 -2.07 16 7 C 0.14 1.64 6.69 -39.21 -0.26 1.38 16 8 O -0.31 -3.84 10.14 -19.42 -0.20 -4.04 16 9 C 0.06 0.66 4.74 37.15 0.18 0.84 16 10 C -0.12 -1.38 5.52 -26.73 -0.15 -1.52 16 11 C 0.06 0.81 4.96 -3.82 -0.02 0.79 16 12 N -0.54 -9.27 4.66 -234.58 -1.09 -10.36 16 13 C 0.06 0.94 5.29 -3.84 -0.02 0.92 16 14 C -0.12 -2.10 6.09 -26.65 -0.16 -2.26 16 15 C -0.11 -2.37 5.26 -26.61 -0.14 -2.51 16 16 C 0.02 0.48 1.94 -91.62 -0.18 0.30 16 17 H 0.04 0.96 5.27 -51.93 -0.27 0.69 16 18 C -0.51 -14.21 8.87 -34.44 -0.31 -14.51 16 19 H 0.07 2.12 8.06 -52.48 -0.42 1.69 16 20 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 21 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 22 Si 0.88 21.76 27.01 -169.99 -4.59 17.17 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.26 -6.27 6.80 56.52 0.38 -5.88 16 26 C 0.07 1.46 4.73 -3.76 -0.02 1.45 16 27 C -0.22 -2.23 8.69 -39.43 -0.34 -2.57 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 30 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 31 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 34 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 35 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 36 H 0.06 0.58 7.65 -51.92 -0.40 0.19 16 37 H 0.06 0.62 7.68 -51.93 -0.40 0.22 16 38 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.07 0.89 6.44 -51.93 -0.33 0.55 16 40 H 0.03 0.39 8.12 -51.92 -0.42 -0.03 16 41 H 0.07 0.98 7.98 -51.93 -0.41 0.57 16 42 H 0.06 0.90 6.22 -51.93 -0.32 0.58 16 43 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 49 H 0.07 1.37 8.01 -51.93 -0.42 0.96 16 50 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.13 1.17 6.30 -52.49 -0.33 0.84 16 LS Contribution 397.57 15.07 5.99 5.99 Total: -1.00 -30.71 397.57 -11.11 -41.82 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -9.22 Total: -1.50 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -2.78 Total: -22.40 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: -0.32 Total: -37.03 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -0.20 Total: -4.04 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.59 Total: 17.17 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.71 -11.11 -41.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595612222.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.409 kcal (2) G-P(sol) polarization free energy of solvation -30.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds