Wall clock time and date at job start Tue Mar 31 2020 11:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38142 * 120.02427 * 2 1 4 4 C 1.38273 * 120.05278 * 180.25595 * 3 2 1 5 5 C 1.38268 * 120.11138 * 359.76827 * 4 3 2 6 6 C 1.38142 * 120.05496 * 359.97316 * 5 4 3 7 7 C 1.50704 * 120.02870 * 180.02562 * 6 5 4 8 8 C 1.38731 * 120.02893 * 179.74666 * 2 1 3 9 9 O 1.35899 * 120.05618 * 359.97438 * 8 2 1 10 10 C 1.42897 * 117.00307 * 269.72796 * 9 8 2 11 11 C 1.53001 * 109.47362 * 180.02562 * 10 9 8 12 12 C 1.52998 * 109.47409 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47268 * 180.02562 * 12 11 10 14 14 C 1.46854 * 110.99665 * 293.95495 * 13 12 11 15 15 C 1.53037 * 109.51886 * 185.84309 * 14 13 12 16 16 C 1.53126 * 109.27801 * 300.81620 * 15 14 13 17 17 C 1.53124 * 109.15878 * 57.65645 * 16 15 14 18 18 H 1.08999 * 109.50059 * 62.28737 * 17 16 15 19 19 C 1.50696 * 109.50007 * 182.40592 * 17 16 15 20 20 H 1.07997 * 120.00077 * 120.00524 * 19 17 16 21 21 C 1.37872 * 120.00039 * 299.99707 * 19 17 16 22 22 N 1.31516 * 120.00300 * 0.02562 * 21 19 17 23 23 Si 1.86803 * 120.00131 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46842 * 90.00399 * 23 21 19 25 25 H 1.48495 * 109.47554 * 210.00488 * 23 21 19 26 26 H 1.48498 * 109.47227 * 330.00616 * 23 21 19 27 27 C 1.46844 * 111.00090 * 58.16171 * 13 12 11 28 28 H 1.08994 * 109.47311 * 270.25096 * 1 2 3 29 29 H 1.08998 * 109.47286 * 30.25657 * 1 2 3 30 30 H 1.09003 * 109.46726 * 150.25468 * 1 2 3 31 31 H 1.07997 * 119.97727 * 0.02562 * 3 2 1 32 32 H 1.08004 * 119.94512 * 179.73978 * 4 3 2 33 33 H 1.08000 * 119.96938 * 180.02562 * 5 4 3 34 34 H 1.08994 * 109.47195 * 269.98089 * 7 6 5 35 35 H 1.09001 * 109.46582 * 29.98336 * 7 6 5 36 36 H 1.09000 * 109.47203 * 149.97951 * 7 6 5 37 37 H 1.08999 * 109.47146 * 59.99844 * 10 9 8 38 38 H 1.09004 * 109.47246 * 300.00138 * 10 9 8 39 39 H 1.08999 * 109.47199 * 59.99777 * 11 10 9 40 40 H 1.09004 * 109.46972 * 300.00207 * 11 10 9 41 41 H 1.08998 * 109.46651 * 59.99512 * 12 11 10 42 42 H 1.09003 * 109.46734 * 300.00278 * 12 11 10 43 43 H 1.08994 * 109.46310 * 65.82535 * 14 13 12 44 44 H 1.09004 * 109.45281 * 305.84691 * 14 13 12 45 45 H 1.09000 * 109.50480 * 180.88135 * 15 14 13 46 46 H 1.09002 * 109.53848 * 60.77851 * 15 14 13 47 47 H 1.08998 * 109.52297 * 177.56592 * 16 15 14 48 48 H 1.08999 * 109.51925 * 297.75795 * 16 15 14 49 49 H 0.97000 * 120.00526 * 179.97438 * 22 21 19 50 50 H 1.09002 * 109.46133 * 294.17882 * 27 13 12 51 51 H 1.09002 * 109.46165 * 54.15521 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1961 0.0000 4 6 3.5809 1.1967 -0.0053 5 6 4.2752 0.0010 -0.0059 6 6 3.5886 -1.1977 -0.0005 7 6 4.3459 -2.5006 -0.0005 8 6 2.2012 -1.2011 0.0053 9 8 1.5235 -2.3790 0.0110 10 6 1.2057 -2.9385 1.2870 11 6 0.4489 -4.2540 1.0929 12 6 0.1080 -4.8526 2.4590 13 7 -0.6181 -6.1160 2.2726 14 6 -1.9304 -5.8827 1.6561 15 6 -2.7148 -7.1959 1.6108 16 6 -1.9258 -8.2284 0.8008 17 6 -0.5453 -8.4170 1.4358 18 1 -0.6603 -8.8063 2.4474 19 6 0.2596 -9.3878 0.6107 20 1 1.1944 -9.0756 0.1691 21 6 -0.1973 -10.6745 0.4198 22 7 -1.3358 -11.0546 0.9573 23 14 0.8008 -11.8780 -0.6024 24 1 1.7465 -12.6098 0.2782 25 1 -0.1133 -12.8461 -1.2598 26 1 1.5627 -11.1350 -1.6380 27 6 0.1762 -7.0684 1.4862 28 1 -0.3633 0.0045 1.0276 29 1 -0.3634 0.8876 -0.5178 30 1 -0.3633 -0.8923 -0.5099 31 1 1.6582 2.1313 0.0004 32 1 4.1196 2.1329 -0.0096 33 1 5.3552 0.0042 -0.0096 34 1 4.5242 -2.8172 -1.0281 35 1 5.3000 -2.3662 0.5091 36 1 3.7612 -3.2607 0.5177 37 1 0.5828 -2.2395 1.8452 38 1 2.1256 -3.1272 1.8403 39 1 1.0720 -4.9527 0.5348 40 1 -0.4711 -4.0656 0.5393 41 1 -0.5153 -4.1536 3.0166 42 1 1.0278 -5.0409 3.0128 43 1 -1.7936 -5.5062 0.6424 44 1 -2.4827 -5.1498 2.2444 45 1 -3.6825 -7.0257 1.1390 46 1 -2.8645 -7.5663 2.6250 47 1 -2.4604 -9.1783 0.8022 48 1 -1.8101 -7.8760 -0.2242 49 1 -1.6575 -11.9598 0.8227 50 1 0.3030 -6.6862 0.4733 51 1 1.1538 -7.1968 1.9510 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595617333.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:28 Heat of formation + Delta-G solvation = -35.267065 kcal Electronic energy + Delta-G solvation = -26731.193472 eV Core-core repulsion = 23208.577552 eV Total energy + Delta-G solvation = -3522.615920 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.41556 -38.61899 -37.45417 -34.46073 -33.81201 -32.52470 -31.39171 -30.26097 -29.82435 -27.29742 -26.86679 -25.29355 -24.92587 -22.86765 -21.91717 -21.48750 -21.11042 -20.76143 -18.30797 -17.82147 -16.76818 -16.40558 -15.74948 -15.36062 -15.17348 -14.79760 -14.40322 -14.22798 -14.11788 -13.81269 -13.40521 -13.32460 -13.20943 -13.04875 -12.91476 -12.87936 -12.36049 -12.13843 -12.07905 -11.94606 -11.77582 -11.69573 -11.54538 -11.35020 -11.02342 -10.97004 -10.87252 -10.63474 -10.41440 -10.05849 -9.89117 -9.76419 -9.44404 -9.01797 -8.83698 -8.71285 -8.67695 -8.28019 -7.63421 -5.95054 -4.01113 0.97607 1.07805 3.19374 3.32484 3.39192 3.42358 3.73314 4.41471 4.52304 4.57790 4.60211 4.70866 4.90056 4.99984 5.09555 5.14855 5.21581 5.30760 5.34905 5.35105 5.40337 5.42824 5.46712 5.51030 5.58024 5.63042 5.69583 5.83601 5.85309 5.90474 6.02604 6.05318 6.11303 6.20185 6.21512 6.31367 6.34649 6.36868 6.46104 6.54146 6.57947 6.74512 6.79070 6.99845 7.24307 7.41540 7.47188 7.67265 7.77520 7.83695 8.11037 8.20254 8.50797 9.02995 9.63132 11.10909 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017709 B = 0.002627 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.722186 B =10656.687373 C =11750.385412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.101 4.101 3 C -0.117 4.117 4 C -0.122 4.122 5 C -0.116 4.116 6 C -0.099 4.099 7 C -0.113 4.113 8 C 0.097 3.903 9 O -0.332 6.332 10 C 0.075 3.925 11 C -0.158 4.158 12 C 0.061 3.939 13 N -0.533 5.533 14 C 0.060 3.940 15 C -0.118 4.118 16 C -0.111 4.111 17 C 0.054 3.946 18 H 0.033 0.967 19 C -0.514 4.514 20 H 0.053 0.947 21 C 0.063 3.937 22 N -0.889 5.889 23 Si 0.889 3.111 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.275 1.275 27 C 0.064 3.936 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.027 0.973 44 H 0.056 0.944 45 H 0.045 0.955 46 H 0.060 0.940 47 H 0.091 0.909 48 H 0.029 0.971 49 H 0.259 0.741 50 H 0.025 0.975 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.951 23.633 0.381 24.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.101 4.101 3 C -0.135 4.135 4 C -0.140 4.140 5 C -0.134 4.134 6 C -0.099 4.099 7 C -0.169 4.169 8 C 0.053 3.947 9 O -0.249 6.249 10 C 0.000 4.000 11 C -0.198 4.198 12 C -0.068 4.068 13 N -0.256 5.256 14 C -0.068 4.068 15 C -0.156 4.156 16 C -0.149 4.149 17 C 0.035 3.965 18 H 0.051 0.949 19 C -0.552 4.552 20 H 0.071 0.929 21 C -0.138 4.138 22 N -0.528 5.528 23 Si 0.717 3.283 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.200 1.200 27 C -0.063 4.063 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.045 0.955 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.079 0.921 47 H 0.109 0.891 48 H 0.048 0.952 49 H 0.069 0.931 50 H 0.043 0.957 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.673 23.128 0.717 23.824 hybrid contribution 0.764 -0.117 -1.282 1.497 sum 6.437 23.011 -0.565 23.901 Atomic orbital electron populations 1.20716 0.90662 1.03284 1.02352 1.20247 0.96817 0.92491 1.00558 1.20923 0.94199 0.97063 1.01328 1.21123 0.94236 0.98006 1.00602 1.20934 0.99807 0.91498 1.01206 1.20281 0.93092 0.96301 1.00269 1.20731 0.99344 0.94003 1.02872 1.18389 0.89429 0.85332 1.01522 1.86033 1.74501 1.34609 1.29764 1.22716 0.98674 0.94895 0.83707 1.22326 1.01059 0.95169 1.01199 1.22093 0.98891 0.91588 0.94271 1.62283 1.03516 1.09006 1.50780 1.22060 0.90383 0.98026 0.96328 1.21682 0.97225 0.95385 1.01285 1.21657 0.98620 0.98491 0.96145 1.18667 0.91641 0.89106 0.97048 0.94885 1.21146 1.06293 0.95931 1.31862 0.92874 1.24931 0.95025 0.98100 0.95793 1.69890 1.19927 1.18226 1.44711 0.86641 0.80029 0.81104 0.80490 1.20726 1.21293 1.20004 1.22349 0.96238 0.93981 0.93690 0.91331 0.91501 0.90661 0.85818 0.85906 0.85766 0.90784 0.91587 0.91073 0.93156 0.92945 0.90247 0.90983 0.91443 0.90975 0.95503 0.92537 0.93583 0.92145 0.89116 0.95176 0.93087 0.95717 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 9.79 36.00 0.35 -0.70 16 2 C -0.10 -1.09 5.89 -104.48 -0.62 -1.71 16 3 C -0.12 -1.07 9.70 -39.60 -0.38 -1.45 16 4 C -0.12 -1.05 10.04 -39.56 -0.40 -1.44 16 5 C -0.12 -1.09 9.70 -39.61 -0.38 -1.47 16 6 C -0.10 -1.10 5.89 -104.47 -0.62 -1.72 16 7 C -0.11 -1.14 9.79 36.01 0.35 -0.79 16 8 C 0.10 1.19 5.67 -39.22 -0.22 0.97 16 9 O -0.33 -4.45 8.32 -19.42 -0.16 -4.61 16 10 C 0.07 0.90 5.69 37.16 0.21 1.11 16 11 C -0.16 -2.17 4.89 -26.73 -0.13 -2.30 16 12 C 0.06 0.86 5.36 -3.83 -0.02 0.84 16 13 N -0.53 -9.67 4.86 -234.67 -1.14 -10.81 16 14 C 0.06 1.04 5.05 -3.83 -0.02 1.02 16 15 C -0.12 -2.31 6.09 -26.65 -0.16 -2.47 16 16 C -0.11 -2.64 5.02 -26.60 -0.13 -2.78 16 17 C 0.05 1.36 2.26 -91.69 -0.21 1.15 16 18 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 19 C -0.51 -14.12 8.56 -34.44 -0.29 -14.41 16 20 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 21 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 22 N -0.89 -25.46 11.35 55.43 0.63 -24.83 16 23 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 C 0.06 1.35 4.06 -3.84 -0.02 1.33 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 30 H 0.07 0.79 7.53 -51.93 -0.39 0.40 16 31 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 33 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 36 H 0.07 0.79 6.32 -51.93 -0.33 0.46 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.60 7.26 -51.93 -0.38 0.22 16 39 H 0.08 1.24 6.50 -51.93 -0.34 0.90 16 40 H 0.07 1.04 6.68 -51.93 -0.35 0.69 16 41 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.03 0.47 6.75 -51.93 -0.35 0.12 16 44 H 0.06 0.86 8.06 -51.93 -0.42 0.44 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 48 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 49 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 50 H 0.02 0.53 6.61 -51.93 -0.34 0.18 16 51 H 0.06 1.21 8.12 -51.93 -0.42 0.79 16 LS Contribution 393.74 15.07 5.93 5.93 Total: -1.00 -29.31 393.74 -11.63 -40.94 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -9.09 Total: 0.21 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: -2.78 Total: -23.18 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: -0.51 Total: -35.64 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.16 Total: -4.61 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.31 -11.63 -40.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595617333.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.670 kcal (2) G-P(sol) polarization free energy of solvation -29.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds