Wall clock time and date at job start Tue Mar 31 2020 11:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38142 * 120.02427 * 2 1 4 4 C 1.38273 * 120.05278 * 180.25595 * 3 2 1 5 5 C 1.38268 * 120.11138 * 359.76827 * 4 3 2 6 6 C 1.38142 * 120.05496 * 359.97316 * 5 4 3 7 7 C 1.50704 * 120.02870 * 180.02562 * 6 5 4 8 8 C 1.38731 * 120.02893 * 179.74666 * 2 1 3 9 9 O 1.35899 * 120.05618 * 359.97438 * 8 2 1 10 10 C 1.42897 * 117.00307 * 269.72796 * 9 8 2 11 11 C 1.53001 * 109.47362 * 180.02562 * 10 9 8 12 12 C 1.52998 * 109.47409 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47268 * 180.02562 * 12 11 10 14 14 C 1.46854 * 110.99665 * 293.95495 * 13 12 11 15 15 C 1.53037 * 109.51886 * 185.84309 * 14 13 12 16 16 C 1.53126 * 109.27801 * 300.81620 * 15 14 13 17 17 C 1.53124 * 109.15878 * 57.65645 * 16 15 14 18 18 H 1.08999 * 109.50059 * 62.28737 * 17 16 15 19 19 C 1.50696 * 109.50007 * 182.40592 * 17 16 15 20 20 H 1.07997 * 120.00077 * 120.00524 * 19 17 16 21 21 C 1.37872 * 120.00039 * 299.99707 * 19 17 16 22 22 N 1.31516 * 120.00300 * 0.02562 * 21 19 17 23 23 Si 1.86803 * 120.00131 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46842 * 90.00399 * 23 21 19 25 25 H 1.48495 * 109.47554 * 210.00488 * 23 21 19 26 26 H 1.48498 * 109.47227 * 330.00616 * 23 21 19 27 27 C 1.46844 * 111.00090 * 58.16171 * 13 12 11 28 28 H 1.08994 * 109.47311 * 270.25096 * 1 2 3 29 29 H 1.08998 * 109.47286 * 30.25657 * 1 2 3 30 30 H 1.09003 * 109.46726 * 150.25468 * 1 2 3 31 31 H 1.07997 * 119.97727 * 0.02562 * 3 2 1 32 32 H 1.08004 * 119.94512 * 179.73978 * 4 3 2 33 33 H 1.08000 * 119.96938 * 180.02562 * 5 4 3 34 34 H 1.08994 * 109.47195 * 269.98089 * 7 6 5 35 35 H 1.09001 * 109.46582 * 29.98336 * 7 6 5 36 36 H 1.09000 * 109.47203 * 149.97951 * 7 6 5 37 37 H 1.08999 * 109.47146 * 59.99844 * 10 9 8 38 38 H 1.09004 * 109.47246 * 300.00138 * 10 9 8 39 39 H 1.08999 * 109.47199 * 59.99777 * 11 10 9 40 40 H 1.09004 * 109.46972 * 300.00207 * 11 10 9 41 41 H 1.08998 * 109.46651 * 59.99512 * 12 11 10 42 42 H 1.09003 * 109.46734 * 300.00278 * 12 11 10 43 43 H 1.08994 * 109.46310 * 65.82535 * 14 13 12 44 44 H 1.09004 * 109.45281 * 305.84691 * 14 13 12 45 45 H 1.09000 * 109.50480 * 180.88135 * 15 14 13 46 46 H 1.09002 * 109.53848 * 60.77851 * 15 14 13 47 47 H 1.08998 * 109.52297 * 177.56592 * 16 15 14 48 48 H 1.08999 * 109.51925 * 297.75795 * 16 15 14 49 49 H 0.97000 * 120.00526 * 179.97438 * 22 21 19 50 50 H 1.09002 * 109.46133 * 294.17882 * 27 13 12 51 51 H 1.09002 * 109.46165 * 54.15521 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1961 0.0000 4 6 3.5809 1.1967 -0.0053 5 6 4.2752 0.0010 -0.0059 6 6 3.5886 -1.1977 -0.0005 7 6 4.3459 -2.5006 -0.0005 8 6 2.2012 -1.2011 0.0053 9 8 1.5235 -2.3790 0.0110 10 6 1.2057 -2.9385 1.2870 11 6 0.4489 -4.2540 1.0929 12 6 0.1080 -4.8526 2.4590 13 7 -0.6181 -6.1160 2.2726 14 6 -1.9304 -5.8827 1.6561 15 6 -2.7148 -7.1959 1.6108 16 6 -1.9258 -8.2284 0.8008 17 6 -0.5453 -8.4170 1.4358 18 1 -0.6603 -8.8063 2.4474 19 6 0.2596 -9.3878 0.6107 20 1 1.1944 -9.0756 0.1691 21 6 -0.1973 -10.6745 0.4198 22 7 -1.3358 -11.0546 0.9573 23 14 0.8008 -11.8780 -0.6024 24 1 1.7465 -12.6098 0.2782 25 1 -0.1133 -12.8461 -1.2598 26 1 1.5627 -11.1350 -1.6380 27 6 0.1762 -7.0684 1.4862 28 1 -0.3633 0.0045 1.0276 29 1 -0.3634 0.8876 -0.5178 30 1 -0.3633 -0.8923 -0.5099 31 1 1.6582 2.1313 0.0004 32 1 4.1196 2.1329 -0.0096 33 1 5.3552 0.0042 -0.0096 34 1 4.5242 -2.8172 -1.0281 35 1 5.3000 -2.3662 0.5091 36 1 3.7612 -3.2607 0.5177 37 1 0.5828 -2.2395 1.8452 38 1 2.1256 -3.1272 1.8403 39 1 1.0720 -4.9527 0.5348 40 1 -0.4711 -4.0656 0.5393 41 1 -0.5153 -4.1536 3.0166 42 1 1.0278 -5.0409 3.0128 43 1 -1.7936 -5.5062 0.6424 44 1 -2.4827 -5.1498 2.2444 45 1 -3.6825 -7.0257 1.1390 46 1 -2.8645 -7.5663 2.6250 47 1 -2.4604 -9.1783 0.8022 48 1 -1.8101 -7.8760 -0.2242 49 1 -1.6575 -11.9598 0.8227 50 1 0.3030 -6.6862 0.4733 51 1 1.1538 -7.1968 1.9510 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595617333.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:26 Heat of formation + Delta-G solvation = -49.779783 kcal Electronic energy + Delta-G solvation = -26731.822791 eV Core-core repulsion = 23208.577552 eV Total energy + Delta-G solvation = -3523.245239 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.21628 -40.09442 -38.36247 -36.10672 -34.53786 -34.24554 -32.37209 -31.68864 -31.41134 -28.14888 -27.56249 -26.94921 -26.51672 -24.15622 -23.19177 -22.68356 -22.24165 -21.84292 -19.97831 -18.73685 -18.36236 -17.61626 -16.93751 -16.53691 -16.17679 -16.09962 -15.94328 -15.59304 -15.09761 -14.96775 -14.66806 -14.46824 -14.39452 -14.08790 -14.00725 -13.88963 -13.62364 -13.57804 -13.33391 -13.06593 -12.88987 -12.86934 -12.70711 -12.56279 -12.52667 -12.42247 -12.23507 -11.93199 -11.90547 -11.72604 -11.49712 -11.37846 -10.85565 -10.77040 -10.65308 -10.37819 -9.55306 -9.49057 -9.09031 -8.08043 -6.22069 0.22629 0.35782 1.40394 1.40855 1.51099 2.40651 2.42858 2.90749 3.16607 3.18756 3.80079 3.84091 3.90510 4.07306 4.08311 4.21603 4.22922 4.29388 4.32924 4.37010 4.38100 4.45460 4.49546 4.61182 4.64844 4.66420 4.69966 4.73239 4.75197 4.75418 4.86255 4.90410 4.91664 4.94346 5.07120 5.11149 5.16172 5.19388 5.28042 5.30816 5.41219 5.50957 5.51237 5.53208 5.61538 5.63647 5.87751 5.96942 6.12807 6.21316 6.36474 6.46291 6.61850 6.90656 7.45678 8.96567 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017709 B = 0.002627 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.722186 B =10656.687373 C =11750.385412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.115 4.115 3 C -0.120 4.120 4 C -0.119 4.119 5 C -0.121 4.121 6 C -0.117 4.117 7 C -0.111 4.111 8 C 0.067 3.933 9 O -0.350 6.350 10 C 0.081 3.919 11 C -0.147 4.147 12 C 0.064 3.936 13 N -0.544 5.544 14 C 0.064 3.936 15 C -0.112 4.112 16 C -0.105 4.105 17 C 0.051 3.949 18 H -0.004 1.004 19 C -0.536 4.536 20 H 0.049 0.951 21 C 0.014 3.986 22 N -0.915 5.915 23 Si 0.953 3.047 24 H -0.275 1.275 25 H -0.283 1.283 26 H -0.270 1.270 27 C 0.082 3.918 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.148 0.852 32 H 0.152 0.848 33 H 0.145 0.855 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.028 0.972 44 H 0.091 0.909 45 H 0.068 0.932 46 H 0.051 0.949 47 H 0.057 0.943 48 H 0.020 0.980 49 H 0.260 0.740 50 H 0.019 0.981 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.644 26.419 0.502 27.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.116 4.116 3 C -0.137 4.137 4 C -0.137 4.137 5 C -0.139 4.139 6 C -0.118 4.118 7 C -0.168 4.168 8 C 0.024 3.976 9 O -0.268 6.268 10 C 0.007 3.993 11 C -0.186 4.186 12 C -0.064 4.064 13 N -0.267 5.267 14 C -0.064 4.064 15 C -0.150 4.150 16 C -0.143 4.143 17 C 0.033 3.967 18 H 0.014 0.986 19 C -0.574 4.574 20 H 0.068 0.932 21 C -0.185 4.185 22 N -0.555 5.555 23 Si 0.778 3.222 24 H -0.201 1.201 25 H -0.208 1.208 26 H -0.194 1.194 27 C -0.046 4.046 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.166 0.834 32 H 0.170 0.830 33 H 0.163 0.837 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.096 0.904 43 H 0.046 0.954 44 H 0.109 0.891 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.038 0.962 49 H 0.069 0.931 50 H 0.037 0.963 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.371 25.932 0.842 26.716 hybrid contribution 0.568 -0.923 -1.310 1.700 sum 6.939 25.009 -0.468 25.958 Atomic orbital electron populations 1.20709 0.89971 1.03199 1.02838 1.20496 0.97600 0.92656 1.00815 1.21263 0.94734 0.97372 1.00373 1.21518 0.94280 0.98916 0.98968 1.21239 1.00977 0.91142 1.00516 1.20485 0.93011 0.97256 1.01038 1.20714 0.99922 0.93517 1.02616 1.18685 0.90078 0.85329 1.03494 1.85992 1.74925 1.35560 1.30322 1.22606 0.98831 0.94172 0.83716 1.22142 1.00496 0.95607 1.00362 1.22158 0.99341 0.90160 0.94780 1.62205 1.03905 1.10607 1.49986 1.22060 0.89938 0.97211 0.97152 1.21598 0.98042 0.95324 0.99990 1.21468 0.98237 0.98339 0.96266 1.18599 0.92748 0.90884 0.94512 0.98593 1.21517 1.06553 0.97043 1.32309 0.93235 1.25713 0.96044 0.99833 0.96903 1.70032 1.21180 1.18562 1.45684 0.85641 0.78657 0.78839 0.79034 1.20050 1.20813 1.19446 1.21962 0.95882 0.92858 0.93889 0.90535 0.89804 0.92458 0.83418 0.83008 0.83714 0.91232 0.89770 0.92599 0.91690 0.92587 0.92738 0.91573 0.88691 0.90378 0.95404 0.89096 0.91300 0.93028 0.92417 0.96152 0.93065 0.96323 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.89 9.79 71.24 0.70 -1.20 16 2 C -0.12 -2.33 5.89 -19.77 -0.12 -2.44 16 3 C -0.12 -1.87 9.70 22.26 0.22 -1.66 16 4 C -0.12 -1.69 10.04 22.29 0.22 -1.47 16 5 C -0.12 -2.01 9.70 22.25 0.22 -1.79 16 6 C -0.12 -2.52 5.89 -19.77 -0.12 -2.64 16 7 C -0.11 -2.23 9.79 71.24 0.70 -1.53 16 8 C 0.07 1.62 5.67 22.51 0.13 1.75 16 9 O -0.35 -9.41 8.32 -92.42 -0.77 -10.18 16 10 C 0.08 1.89 5.69 71.98 0.41 2.30 16 11 C -0.15 -3.94 4.89 30.59 0.15 -3.79 16 12 C 0.06 1.71 5.36 86.30 0.46 2.17 16 13 N -0.54 -19.31 4.86 -896.36 -4.35 -23.67 16 14 C 0.06 2.12 5.05 86.32 0.44 2.56 16 15 C -0.11 -4.34 6.09 30.65 0.19 -4.15 16 16 C -0.10 -5.15 5.02 30.68 0.15 -4.99 16 17 C 0.05 2.68 2.26 -11.49 -0.03 2.65 16 18 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 19 C -0.54 -30.42 8.56 25.60 0.22 -30.20 16 20 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 21 C 0.01 0.78 5.30 84.65 0.45 1.23 16 22 N -0.92 -54.07 11.35 21.45 0.24 -53.82 16 23 Si 0.95 44.58 29.54 68.60 2.03 46.60 16 24 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 26 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 27 C 0.08 3.51 4.06 86.33 0.35 3.86 16 28 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 1.10 8.09 -2.39 -0.02 1.08 16 30 H 0.06 1.18 7.53 -2.39 -0.02 1.16 16 31 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 32 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 33 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 1.30 8.09 -2.39 -0.02 1.28 16 36 H 0.06 1.26 6.32 -2.39 -0.02 1.25 16 37 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.06 1.24 7.26 -2.38 -0.02 1.22 16 39 H 0.05 1.73 6.50 -2.39 -0.02 1.71 16 40 H 0.07 1.85 6.68 -2.38 -0.02 1.83 16 41 H 0.09 2.08 8.06 -2.39 -0.02 2.06 16 42 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.03 0.93 6.75 -2.39 -0.02 0.92 16 44 H 0.09 2.45 8.06 -2.38 -0.02 2.43 16 45 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 46 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.06 3.20 6.15 -2.39 -0.01 3.19 16 48 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 50 H 0.02 0.82 6.61 -2.39 -0.02 0.80 16 51 H 0.05 2.32 8.12 -2.39 -0.02 2.30 16 Total: -1.00 -65.72 393.74 2.76 -62.96 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.88 Total: 17.46 kcal Atomic # 6 Polarization: -44.09 SS G_CDS: 4.74 Total: -39.35 kcal Atomic # 7 Polarization: -73.38 SS G_CDS: -4.11 Total: -77.49 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -0.77 Total: -10.18 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -65.72 2.76 -62.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595617333.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.184 kcal (2) G-P(sol) polarization free energy of solvation -65.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds