Wall clock time and date at job start Tue Mar 31 2020 11:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38146 * 120.02577 * 2 1 4 4 C 1.38267 * 120.05228 * 180.25567 * 3 2 1 5 5 C 1.38267 * 120.11349 * 359.76115 * 4 3 2 6 6 C 1.38136 * 120.05333 * 359.97438 * 5 4 3 7 7 C 1.50705 * 120.02684 * 180.02562 * 6 5 4 8 8 C 1.38727 * 120.03021 * 179.73915 * 2 1 3 9 9 O 1.35899 * 120.05702 * 359.97438 * 8 2 1 10 10 C 1.42897 * 117.00092 * 269.73115 * 9 8 2 11 11 C 1.53008 * 109.47104 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47188 * 179.97438 * 11 10 9 13 13 N 1.46900 * 109.47236 * 179.97438 * 12 11 10 14 14 C 1.46848 * 110.99918 * 293.95281 * 13 12 11 15 15 C 1.53037 * 109.52381 * 174.15634 * 14 13 12 16 16 C 1.53123 * 109.27398 * 59.18254 * 15 14 13 17 17 C 1.53120 * 109.21163 * 302.31409 * 16 15 14 18 18 H 1.08997 * 109.50353 * 297.74224 * 17 16 15 19 19 C 1.50708 * 109.50132 * 177.62791 * 17 16 15 20 20 H 1.07995 * 119.99570 * 239.99751 * 19 17 16 21 21 C 1.37877 * 119.99938 * 59.99803 * 19 17 16 22 22 N 1.31511 * 120.00144 * 0.02562 * 21 19 17 23 23 Si 1.86794 * 119.99782 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47194 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47232 * 120.00194 * 23 21 19 26 26 H 1.48505 * 109.47012 * 240.00252 * 23 21 19 27 27 C 1.46845 * 111.00045 * 169.74692 * 13 12 11 28 28 H 1.08995 * 109.47285 * 270.25437 * 1 2 3 29 29 H 1.08996 * 109.46719 * 30.26209 * 1 2 3 30 30 H 1.09003 * 109.46812 * 150.25522 * 1 2 3 31 31 H 1.07997 * 119.97681 * 0.02562 * 3 2 1 32 32 H 1.08003 * 119.94355 * 179.74267 * 4 3 2 33 33 H 1.07997 * 119.97197 * 179.97438 * 5 4 3 34 34 H 1.08996 * 109.47310 * 269.98086 * 7 6 5 35 35 H 1.08999 * 109.46802 * 29.98470 * 7 6 5 36 36 H 1.09005 * 109.47142 * 149.98058 * 7 6 5 37 37 H 1.08992 * 109.47711 * 59.99600 * 10 9 8 38 38 H 1.09006 * 109.47096 * 299.98853 * 10 9 8 39 39 H 1.08992 * 109.47175 * 59.99257 * 11 10 9 40 40 H 1.09001 * 109.46825 * 299.99068 * 11 10 9 41 41 H 1.09004 * 109.46657 * 59.99648 * 12 11 10 42 42 H 1.08999 * 109.47193 * 299.99934 * 12 11 10 43 43 H 1.09006 * 109.46097 * 54.14433 * 14 13 12 44 44 H 1.08996 * 109.46046 * 294.17217 * 14 13 12 45 45 H 1.08996 * 109.50616 * 299.24564 * 15 14 13 46 46 H 1.08993 * 109.53667 * 179.13827 * 15 14 13 47 47 H 1.09002 * 109.52319 * 62.25202 * 16 15 14 48 48 H 1.08995 * 109.52318 * 182.37884 * 16 15 14 49 49 H 0.97002 * 120.00547 * 179.97438 * 22 21 19 50 50 H 1.09003 * 109.45905 * 305.85870 * 27 13 12 51 51 H 1.09002 * 109.46166 * 65.83312 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1961 0.0000 4 6 3.5810 1.1967 -0.0053 5 6 4.2752 0.0010 -0.0057 6 6 3.5886 -1.1976 -0.0002 7 6 4.3459 -2.5006 0.0000 8 6 2.2013 -1.2010 0.0055 9 8 1.5236 -2.3790 0.0114 10 6 1.2057 -2.9382 1.2874 11 6 0.4490 -4.2538 1.0934 12 6 0.1092 -4.8529 2.4597 13 7 -0.6179 -6.1157 2.2735 14 6 -1.9307 -5.8813 1.6586 15 6 -2.5965 -7.2236 1.3469 16 6 -2.7548 -8.0224 2.6437 17 6 -1.3795 -8.2123 3.2895 18 1 -0.7398 -8.7882 2.6209 19 6 -1.5344 -8.9474 4.5960 20 1 -1.2117 -8.4852 5.5172 21 6 -2.0881 -10.2100 4.6152 22 7 -2.4806 -10.7730 3.4933 23 14 -2.2807 -11.1208 6.2346 24 1 -1.7653 -10.2762 7.3419 25 1 -3.7166 -11.4199 6.4665 26 1 -1.5126 -12.3907 6.1826 27 6 -0.7486 -6.8400 3.5442 28 1 -0.3633 0.0046 1.0276 29 1 -0.3632 0.8876 -0.5179 30 1 -0.3633 -0.8923 -0.5099 31 1 1.6583 2.1314 0.0004 32 1 4.1196 2.1328 -0.0095 33 1 5.3552 0.0042 -0.0103 34 1 4.5243 -2.8173 -1.0276 35 1 5.3000 -2.3661 0.5096 36 1 3.7612 -3.2607 0.5182 37 1 0.5830 -2.2393 1.8455 38 1 2.1257 -3.1270 1.8407 39 1 1.0721 -4.9526 0.5354 40 1 -0.4710 -4.0655 0.5400 41 1 -0.5139 -4.1541 3.0179 42 1 1.0293 -5.0412 3.0128 43 1 -1.8035 -5.3160 0.7353 44 1 -2.5584 -5.3157 2.3471 45 1 -1.9759 -7.7840 0.6478 46 1 -3.5773 -7.0499 0.9046 47 1 -3.4070 -7.4801 3.3282 48 1 -3.1900 -8.9965 2.4206 49 1 -2.8698 -11.6614 3.5067 50 1 0.2372 -6.9710 3.9905 51 1 -1.3821 -6.2699 4.2237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595617334.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:32 Heat of formation + Delta-G solvation = -36.116865 kcal Electronic energy + Delta-G solvation = -26324.575160 eV Core-core repulsion = 22801.922390 eV Total energy + Delta-G solvation = -3522.652770 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.44497 -38.41473 -37.51626 -34.48964 -33.84329 -32.56570 -31.42841 -30.55880 -29.73729 -27.36875 -26.89710 -25.30825 -24.95781 -22.52894 -21.93729 -21.69947 -21.14322 -20.41162 -18.59183 -17.86461 -16.80583 -16.40153 -15.80299 -15.44763 -15.24654 -14.84435 -14.45639 -14.29265 -14.01481 -13.61759 -13.58064 -13.38043 -13.24359 -13.15027 -12.93518 -12.67254 -12.42327 -12.30869 -12.16477 -11.85858 -11.81771 -11.65150 -11.48392 -11.34195 -11.07834 -10.95668 -10.82090 -10.61616 -10.53901 -10.06040 -9.90229 -9.81883 -9.45743 -9.02174 -8.86624 -8.72450 -8.68051 -8.29393 -7.66645 -5.96340 -4.02497 0.94269 1.04885 3.14238 3.30320 3.38405 3.41915 3.67559 4.39597 4.48842 4.54826 4.58342 4.68159 4.89131 4.97556 5.09920 5.16370 5.18159 5.27097 5.30899 5.33789 5.38185 5.41297 5.46625 5.48094 5.54924 5.59542 5.71103 5.82220 5.85303 5.86296 6.00443 6.09403 6.14980 6.17538 6.19088 6.25810 6.32679 6.35308 6.43200 6.52593 6.55041 6.73873 6.77255 6.98120 7.23911 7.40230 7.43633 7.67571 7.76672 7.83321 8.10040 8.19233 8.49501 9.01791 9.61724 11.09622 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.026993 B = 0.002133 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.042334 B =13124.945720 C =13559.650364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.100 4.100 3 C -0.117 4.117 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.099 4.099 7 C -0.113 4.113 8 C 0.097 3.903 9 O -0.331 6.331 10 C 0.070 3.930 11 C -0.114 4.114 12 C 0.060 3.940 13 N -0.537 5.537 14 C 0.060 3.940 15 C -0.117 4.117 16 C -0.111 4.111 17 C 0.054 3.946 18 H 0.034 0.966 19 C -0.514 4.514 20 H 0.054 0.946 21 C 0.062 3.938 22 N -0.888 5.888 23 Si 0.890 3.110 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.284 1.284 27 C 0.068 3.932 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.026 0.974 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.022 0.978 45 H 0.061 0.939 46 H 0.046 0.954 47 H 0.029 0.971 48 H 0.091 0.909 49 H 0.259 0.741 50 H 0.059 0.941 51 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.684 22.750 -7.830 25.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.101 4.101 3 C -0.135 4.135 4 C -0.139 4.139 5 C -0.135 4.135 6 C -0.100 4.100 7 C -0.169 4.169 8 C 0.053 3.947 9 O -0.248 6.248 10 C -0.004 4.004 11 C -0.151 4.151 12 C -0.069 4.069 13 N -0.262 5.262 14 C -0.068 4.068 15 C -0.155 4.155 16 C -0.149 4.149 17 C 0.036 3.964 18 H 0.052 0.948 19 C -0.552 4.552 20 H 0.072 0.928 21 C -0.139 4.139 22 N -0.527 5.527 23 Si 0.718 3.282 24 H -0.199 1.199 25 H -0.211 1.211 26 H -0.210 1.210 27 C -0.059 4.059 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.044 0.956 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.040 0.960 45 H 0.079 0.921 46 H 0.064 0.936 47 H 0.048 0.952 48 H 0.109 0.891 49 H 0.069 0.931 50 H 0.077 0.923 51 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 9.804 22.167 -8.349 25.636 hybrid contribution -0.540 0.197 1.616 1.715 sum 9.264 22.365 -6.733 25.127 Atomic orbital electron populations 1.20723 0.90634 1.03298 1.02408 1.20255 0.96837 0.92500 1.00464 1.20931 0.94206 0.97093 1.01273 1.21128 0.94239 0.98030 1.00515 1.20933 0.99811 0.91506 1.01213 1.20273 0.93079 0.96303 1.00314 1.20730 0.99366 0.94025 1.02800 1.18363 0.89397 0.85271 1.01636 1.85998 1.74540 1.34637 1.29627 1.22733 0.98851 0.95127 0.83707 1.21536 1.00795 0.94136 0.98679 1.21900 0.98626 0.91235 0.95121 1.61948 1.18609 1.18421 1.27197 1.22090 0.89147 0.97867 0.97647 1.21672 0.98096 0.95405 1.00357 1.21656 1.00029 1.00251 0.92972 1.18694 0.92410 0.89271 0.96059 0.94753 1.21182 1.40382 1.00533 0.93141 0.92822 1.24939 0.95489 0.97368 0.96120 1.69900 1.41983 1.15275 1.25521 0.86574 0.77663 0.79797 0.84162 1.19885 1.21114 1.21045 1.22336 0.99553 0.96764 0.87227 0.91309 0.91488 0.90618 0.85802 0.85897 0.85762 0.90820 0.91607 0.91027 0.93167 0.92865 0.90067 0.90970 0.95557 0.91049 0.92114 0.96014 0.92073 0.93570 0.95236 0.89102 0.93118 0.92294 0.96341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.79 36.01 0.35 -0.66 16 2 C -0.10 -1.03 5.89 -104.47 -0.62 -1.65 16 3 C -0.12 -1.02 9.70 -39.60 -0.38 -1.40 16 4 C -0.12 -0.99 10.04 -39.56 -0.40 -1.38 16 5 C -0.12 -1.02 9.70 -39.61 -0.38 -1.41 16 6 C -0.10 -1.03 5.89 -104.47 -0.62 -1.64 16 7 C -0.11 -1.02 9.79 36.01 0.35 -0.67 16 8 C 0.10 1.12 5.67 -39.22 -0.22 0.89 16 9 O -0.33 -4.09 8.32 -19.42 -0.16 -4.25 16 10 C 0.07 0.80 5.69 37.16 0.21 1.01 16 11 C -0.11 -1.45 5.52 -26.73 -0.15 -1.59 16 12 C 0.06 0.87 4.96 -3.82 -0.02 0.85 16 13 N -0.54 -9.86 4.66 -234.58 -1.09 -10.95 16 14 C 0.06 1.06 5.29 -3.83 -0.02 1.04 16 15 C -0.12 -2.31 6.09 -26.65 -0.16 -2.48 16 16 C -0.11 -2.64 5.02 -26.61 -0.13 -2.77 16 17 C 0.05 1.37 2.27 -91.62 -0.21 1.16 16 18 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 19 C -0.51 -14.10 8.57 -34.44 -0.30 -14.39 16 20 H 0.05 1.46 7.75 -52.49 -0.41 1.05 16 21 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 22 N -0.89 -25.39 11.35 55.43 0.63 -24.76 16 23 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 C 0.07 1.44 4.69 -3.77 -0.02 1.43 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 30 H 0.07 0.75 7.53 -51.93 -0.39 0.35 16 31 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 33 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 36 H 0.07 0.71 6.32 -51.93 -0.33 0.38 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.57 7.26 -51.93 -0.38 0.20 16 39 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.07 0.94 6.44 -51.93 -0.33 0.60 16 41 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 42 H 0.07 1.00 7.98 -51.93 -0.41 0.59 16 43 H 0.06 0.94 6.22 -51.93 -0.32 0.62 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 49 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 50 H 0.06 1.23 8.01 -51.93 -0.42 0.81 16 51 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 396.93 15.07 5.98 5.98 Total: -1.00 -29.21 396.93 -11.67 -40.87 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -9.20 Total: -1.11 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: -2.80 Total: -22.04 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: -0.46 Total: -35.71 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: -0.16 Total: -4.25 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.21 -11.67 -40.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595617334.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.756 kcal (2) G-P(sol) polarization free energy of solvation -29.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds