Wall clock time and date at job start Tue Mar 31 2020 11:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38146 * 120.02577 * 2 1 4 4 C 1.38267 * 120.05228 * 180.25567 * 3 2 1 5 5 C 1.38267 * 120.11349 * 359.76115 * 4 3 2 6 6 C 1.38136 * 120.05333 * 359.97438 * 5 4 3 7 7 C 1.50705 * 120.02684 * 180.02562 * 6 5 4 8 8 C 1.38727 * 120.03021 * 179.73915 * 2 1 3 9 9 O 1.35899 * 120.05702 * 359.97438 * 8 2 1 10 10 C 1.42897 * 117.00092 * 269.73115 * 9 8 2 11 11 C 1.53008 * 109.47104 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47188 * 179.97438 * 11 10 9 13 13 N 1.46900 * 109.47236 * 179.97438 * 12 11 10 14 14 C 1.46848 * 110.99918 * 293.95281 * 13 12 11 15 15 C 1.53037 * 109.52381 * 174.15634 * 14 13 12 16 16 C 1.53123 * 109.27398 * 59.18254 * 15 14 13 17 17 C 1.53120 * 109.21163 * 302.31409 * 16 15 14 18 18 H 1.08997 * 109.50353 * 297.74224 * 17 16 15 19 19 C 1.50708 * 109.50132 * 177.62791 * 17 16 15 20 20 H 1.07995 * 119.99570 * 239.99751 * 19 17 16 21 21 C 1.37877 * 119.99938 * 59.99803 * 19 17 16 22 22 N 1.31511 * 120.00144 * 0.02562 * 21 19 17 23 23 Si 1.86794 * 119.99782 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47194 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47232 * 120.00194 * 23 21 19 26 26 H 1.48505 * 109.47012 * 240.00252 * 23 21 19 27 27 C 1.46845 * 111.00045 * 169.74692 * 13 12 11 28 28 H 1.08995 * 109.47285 * 270.25437 * 1 2 3 29 29 H 1.08996 * 109.46719 * 30.26209 * 1 2 3 30 30 H 1.09003 * 109.46812 * 150.25522 * 1 2 3 31 31 H 1.07997 * 119.97681 * 0.02562 * 3 2 1 32 32 H 1.08003 * 119.94355 * 179.74267 * 4 3 2 33 33 H 1.07997 * 119.97197 * 179.97438 * 5 4 3 34 34 H 1.08996 * 109.47310 * 269.98086 * 7 6 5 35 35 H 1.08999 * 109.46802 * 29.98470 * 7 6 5 36 36 H 1.09005 * 109.47142 * 149.98058 * 7 6 5 37 37 H 1.08992 * 109.47711 * 59.99600 * 10 9 8 38 38 H 1.09006 * 109.47096 * 299.98853 * 10 9 8 39 39 H 1.08992 * 109.47175 * 59.99257 * 11 10 9 40 40 H 1.09001 * 109.46825 * 299.99068 * 11 10 9 41 41 H 1.09004 * 109.46657 * 59.99648 * 12 11 10 42 42 H 1.08999 * 109.47193 * 299.99934 * 12 11 10 43 43 H 1.09006 * 109.46097 * 54.14433 * 14 13 12 44 44 H 1.08996 * 109.46046 * 294.17217 * 14 13 12 45 45 H 1.08996 * 109.50616 * 299.24564 * 15 14 13 46 46 H 1.08993 * 109.53667 * 179.13827 * 15 14 13 47 47 H 1.09002 * 109.52319 * 62.25202 * 16 15 14 48 48 H 1.08995 * 109.52318 * 182.37884 * 16 15 14 49 49 H 0.97002 * 120.00547 * 179.97438 * 22 21 19 50 50 H 1.09003 * 109.45905 * 305.85870 * 27 13 12 51 51 H 1.09002 * 109.46166 * 65.83312 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1961 0.0000 4 6 3.5810 1.1967 -0.0053 5 6 4.2752 0.0010 -0.0057 6 6 3.5886 -1.1976 -0.0002 7 6 4.3459 -2.5006 0.0000 8 6 2.2013 -1.2010 0.0055 9 8 1.5236 -2.3790 0.0114 10 6 1.2057 -2.9382 1.2874 11 6 0.4490 -4.2538 1.0934 12 6 0.1092 -4.8529 2.4597 13 7 -0.6179 -6.1157 2.2735 14 6 -1.9307 -5.8813 1.6586 15 6 -2.5965 -7.2236 1.3469 16 6 -2.7548 -8.0224 2.6437 17 6 -1.3795 -8.2123 3.2895 18 1 -0.7398 -8.7882 2.6209 19 6 -1.5344 -8.9474 4.5960 20 1 -1.2117 -8.4852 5.5172 21 6 -2.0881 -10.2100 4.6152 22 7 -2.4806 -10.7730 3.4933 23 14 -2.2807 -11.1208 6.2346 24 1 -1.7653 -10.2762 7.3419 25 1 -3.7166 -11.4199 6.4665 26 1 -1.5126 -12.3907 6.1826 27 6 -0.7486 -6.8400 3.5442 28 1 -0.3633 0.0046 1.0276 29 1 -0.3632 0.8876 -0.5179 30 1 -0.3633 -0.8923 -0.5099 31 1 1.6583 2.1314 0.0004 32 1 4.1196 2.1328 -0.0095 33 1 5.3552 0.0042 -0.0103 34 1 4.5243 -2.8173 -1.0276 35 1 5.3000 -2.3661 0.5096 36 1 3.7612 -3.2607 0.5182 37 1 0.5830 -2.2393 1.8455 38 1 2.1257 -3.1270 1.8407 39 1 1.0721 -4.9526 0.5354 40 1 -0.4710 -4.0655 0.5400 41 1 -0.5139 -4.1541 3.0179 42 1 1.0293 -5.0412 3.0128 43 1 -1.8035 -5.3160 0.7353 44 1 -2.5584 -5.3157 2.3471 45 1 -1.9759 -7.7840 0.6478 46 1 -3.5773 -7.0499 0.9046 47 1 -3.4070 -7.4801 3.3282 48 1 -3.1900 -8.9965 2.4206 49 1 -2.8698 -11.6614 3.5067 50 1 0.2372 -6.9710 3.9905 51 1 -1.3821 -6.2699 4.2237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595617334.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:31 Heat of formation + Delta-G solvation = -50.043867 kcal Electronic energy + Delta-G solvation = -26325.179080 eV Core-core repulsion = 22801.922390 eV Total energy + Delta-G solvation = -3523.256690 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.18554 -39.91961 -38.37273 -36.08680 -34.51634 -34.25305 -32.49510 -31.79382 -31.40499 -28.17519 -27.54290 -26.94063 -26.47847 -23.88990 -23.39845 -22.65223 -21.82564 -21.75160 -20.36690 -18.71136 -18.34576 -17.60221 -16.96427 -16.57584 -16.27442 -16.22998 -15.80574 -15.43916 -15.04446 -14.93107 -14.83710 -14.47011 -14.32193 -14.07526 -13.99218 -13.87257 -13.74924 -13.58275 -13.18766 -13.02942 -12.86664 -12.84055 -12.66732 -12.52747 -12.45106 -12.42743 -12.21325 -11.94732 -11.86709 -11.72019 -11.59231 -11.38118 -10.85568 -10.73846 -10.65012 -10.37540 -9.53513 -9.44749 -9.14295 -8.07817 -6.22049 0.23774 0.37473 1.40193 1.41809 1.53145 2.36053 2.43988 2.86490 3.19002 3.21878 3.82598 3.87308 3.92946 4.09939 4.11877 4.14593 4.25748 4.28820 4.36976 4.39431 4.42409 4.48017 4.51123 4.61192 4.63720 4.65418 4.70273 4.73695 4.75017 4.78233 4.88032 4.89928 4.92402 4.97617 5.08292 5.11732 5.17258 5.20061 5.29278 5.33184 5.40543 5.52588 5.52907 5.52939 5.63071 5.64091 5.88872 5.96793 6.12371 6.21424 6.35459 6.45978 6.62491 6.90935 7.45804 8.97007 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.026993 B = 0.002133 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.042334 B =13124.945720 C =13559.650364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.115 4.115 3 C -0.122 4.122 4 C -0.120 4.120 5 C -0.122 4.122 6 C -0.116 4.116 7 C -0.111 4.111 8 C 0.069 3.931 9 O -0.344 6.344 10 C 0.077 3.923 11 C -0.101 4.101 12 C 0.063 3.937 13 N -0.549 5.549 14 C 0.065 3.935 15 C -0.111 4.111 16 C -0.104 4.104 17 C 0.051 3.949 18 H -0.004 1.004 19 C -0.534 4.534 20 H 0.052 0.948 21 C 0.012 3.988 22 N -0.916 5.916 23 Si 0.955 3.045 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.281 1.281 27 C 0.082 3.918 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.146 0.854 32 H 0.151 0.849 33 H 0.145 0.855 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.037 0.963 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.026 0.974 45 H 0.049 0.951 46 H 0.069 0.931 47 H 0.022 0.978 48 H 0.057 0.943 49 H 0.260 0.740 50 H 0.058 0.942 51 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.348 25.259 -7.578 28.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.116 4.116 3 C -0.139 4.139 4 C -0.137 4.137 5 C -0.140 4.140 6 C -0.116 4.116 7 C -0.168 4.168 8 C 0.025 3.975 9 O -0.261 6.261 10 C 0.002 3.998 11 C -0.139 4.139 12 C -0.065 4.065 13 N -0.274 5.274 14 C -0.063 4.063 15 C -0.149 4.149 16 C -0.143 4.143 17 C 0.033 3.967 18 H 0.014 0.986 19 C -0.573 4.573 20 H 0.070 0.930 21 C -0.187 4.187 22 N -0.555 5.555 23 Si 0.781 3.219 24 H -0.191 1.191 25 H -0.206 1.206 26 H -0.207 1.207 27 C -0.046 4.046 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.164 0.836 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.055 0.945 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.045 0.955 45 H 0.068 0.932 46 H 0.087 0.913 47 H 0.041 0.959 48 H 0.076 0.924 49 H 0.069 0.931 50 H 0.076 0.924 51 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 10.476 24.694 -8.103 28.022 hybrid contribution -0.699 -0.536 1.493 1.733 sum 9.777 24.159 -6.611 26.887 Atomic orbital electron populations 1.20714 0.90039 1.03364 1.02677 1.20501 0.97563 0.92751 1.00779 1.21254 0.94765 0.97392 1.00528 1.21509 0.94259 0.98972 0.99000 1.21243 1.00984 0.91178 1.00552 1.20503 0.92986 0.97346 1.00803 1.20726 0.99833 0.93392 1.02812 1.18641 0.90050 0.85268 1.03494 1.85961 1.74897 1.35400 1.29873 1.22603 0.98920 0.94436 0.83813 1.21360 1.00756 0.94561 0.97246 1.21931 0.98441 0.89674 0.96486 1.61868 1.19371 1.20581 1.25575 1.22079 0.88642 0.96627 0.98946 1.21588 0.99546 0.95940 0.97833 1.21466 0.98764 0.99158 0.94872 1.18624 0.92738 0.90902 0.94482 0.98599 1.21546 1.40458 1.01272 0.94022 0.92986 1.25741 0.95206 0.98273 0.99449 1.70045 1.42468 1.15535 1.27475 0.85552 0.77681 0.78463 0.80219 1.19115 1.20628 1.20659 1.22000 0.98928 0.95022 0.88609 0.90913 0.89881 0.92044 0.83635 0.83166 0.83709 0.90869 0.89975 0.92287 0.92475 0.92521 0.91154 0.90953 0.94461 0.90567 0.89301 0.95532 0.93204 0.91262 0.95895 0.92409 0.93082 0.92369 0.96548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 9.79 71.24 0.70 -1.13 16 2 C -0.12 -2.22 5.89 -19.77 -0.12 -2.34 16 3 C -0.12 -1.84 9.70 22.25 0.22 -1.62 16 4 C -0.12 -1.62 10.04 22.28 0.22 -1.40 16 5 C -0.12 -1.88 9.70 22.25 0.22 -1.66 16 6 C -0.12 -2.28 5.89 -19.77 -0.12 -2.40 16 7 C -0.11 -1.94 9.79 71.24 0.70 -1.25 16 8 C 0.07 1.53 5.67 22.51 0.13 1.66 16 9 O -0.34 -8.34 8.32 -92.41 -0.77 -9.11 16 10 C 0.08 1.67 5.69 71.98 0.41 2.08 16 11 C -0.10 -2.46 5.52 30.60 0.17 -2.29 16 12 C 0.06 1.74 4.96 86.30 0.43 2.17 16 13 N -0.55 -19.77 4.66 -896.08 -4.17 -23.94 16 14 C 0.06 2.18 5.29 86.33 0.46 2.64 16 15 C -0.11 -4.35 6.09 30.65 0.19 -4.16 16 16 C -0.10 -5.09 5.02 30.68 0.15 -4.94 16 17 C 0.05 2.66 2.27 -11.44 -0.03 2.63 16 18 H 0.00 -0.25 8.14 -2.39 -0.02 -0.26 16 19 C -0.53 -29.99 8.57 25.60 0.22 -29.77 16 20 H 0.05 2.86 7.75 -2.91 -0.02 2.83 16 21 C 0.01 0.67 5.30 84.66 0.45 1.12 16 22 N -0.92 -53.85 11.35 21.45 0.24 -53.60 16 23 Si 0.96 44.12 29.54 68.60 2.03 46.14 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 26 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 27 C 0.08 3.50 4.69 86.37 0.41 3.90 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.08 1.04 8.09 -2.39 -0.02 1.02 16 30 H 0.06 1.17 7.53 -2.39 -0.02 1.15 16 31 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 32 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 33 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.11 8.09 -2.39 -0.02 1.09 16 36 H 0.06 1.16 6.32 -2.38 -0.02 1.14 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 1.18 7.26 -2.38 -0.02 1.16 16 39 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.07 1.75 6.44 -2.39 -0.02 1.74 16 41 H 0.04 0.98 8.12 -2.38 -0.02 0.96 16 42 H 0.08 2.05 7.98 -2.39 -0.02 2.03 16 43 H 0.09 2.54 6.22 -2.38 -0.01 2.53 16 44 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.06 3.19 6.15 -2.39 -0.01 3.17 16 49 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 50 H 0.06 2.45 8.01 -2.39 -0.02 2.43 16 51 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -64.38 396.93 3.00 -61.38 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.87 Total: 15.89 kcal Atomic # 6 Polarization: -41.56 SS G_CDS: 4.80 Total: -36.76 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: -3.93 Total: -77.55 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.77 Total: -9.11 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -64.38 3.00 -61.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595617334.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.336 kcal (2) G-P(sol) polarization free energy of solvation -64.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds