Wall clock time and date at job start Tue Mar 31 2020 11:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38234 * 119.99503 * 2 1 4 4 C 1.38231 * 119.99892 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.00319 * 180.02562 * 4 3 2 6 6 C 1.38243 * 120.00070 * 359.90902 * 4 3 2 7 7 C 1.38235 * 119.99602 * 0.07188 * 6 4 3 8 8 C 1.50701 * 119.99808 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.47148 * 89.99755 * 8 7 6 10 10 O 1.21286 * 119.99909 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00373 * 179.97438 * 9 8 7 12 12 C 1.46492 * 120.00345 * 180.02562 * 11 9 8 13 13 C 1.50699 * 109.47213 * 90.00246 * 12 11 9 14 14 H 1.07995 * 119.99687 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99998 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99743 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00038 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47598 * 89.99388 * 17 15 13 19 19 H 1.48500 * 109.47353 * 209.99800 * 17 15 13 20 20 H 1.48499 * 109.47124 * 329.99645 * 17 15 13 21 21 C 1.46500 * 119.99697 * 0.02562 * 11 9 8 22 22 C 1.52997 * 109.47405 * 89.99405 * 21 11 9 23 23 C 1.52998 * 109.47340 * 179.97438 * 22 21 11 24 24 C 1.52993 * 109.47242 * 175.00310 * 23 22 21 25 25 C 1.53003 * 109.47128 * 295.00379 * 23 22 21 26 26 C 1.38230 * 120.00326 * 359.97438 * 7 6 4 27 27 H 1.08999 * 109.46630 * 269.97351 * 1 2 3 28 28 H 1.08992 * 109.47454 * 29.97431 * 1 2 3 29 29 H 1.08996 * 109.46937 * 149.97950 * 1 2 3 30 30 H 1.07997 * 120.00455 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.47060 * 269.91029 * 5 4 3 32 32 H 1.08998 * 109.46941 * 29.90973 * 5 4 3 33 33 H 1.08998 * 109.47482 * 149.91122 * 5 4 3 34 34 H 1.08000 * 119.99728 * 180.34119 * 6 4 3 35 35 H 1.08993 * 109.47341 * 210.00461 * 8 7 6 36 36 H 1.09001 * 109.46864 * 330.00546 * 8 7 6 37 37 H 1.09000 * 109.47579 * 210.00775 * 12 11 9 38 38 H 1.09002 * 109.47216 * 330.00066 * 12 11 9 39 39 H 0.97008 * 119.99498 * 180.02562 * 16 15 13 40 40 H 1.08998 * 109.47120 * 209.99674 * 21 11 9 41 41 H 1.09004 * 109.46914 * 329.99446 * 21 11 9 42 42 H 1.08998 * 109.47201 * 300.00219 * 22 21 11 43 43 H 1.09004 * 109.47051 * 60.00125 * 22 21 11 44 44 H 1.09004 * 109.46916 * 55.00368 * 23 22 21 45 45 H 1.08996 * 109.47434 * 60.00340 * 24 23 22 46 46 H 1.09004 * 109.47283 * 180.02562 * 24 23 22 47 47 H 1.08999 * 109.47602 * 300.00061 * 24 23 22 48 48 H 1.08996 * 109.47185 * 299.99438 * 25 23 22 49 49 H 1.08999 * 109.47464 * 60.00233 * 25 23 22 50 50 H 1.09004 * 109.46967 * 179.97438 * 25 23 22 51 51 H 1.08001 * 120.00371 * 179.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.3339 2.5025 0.0000 6 6 4.2717 0.0001 0.0008 7 6 3.5806 -1.1970 0.0012 8 6 4.3341 -2.5021 0.0021 9 6 4.5849 -2.9364 1.4233 10 8 4.1902 -2.2536 2.3446 11 7 5.2470 -4.0840 1.6704 12 6 5.4903 -4.5064 3.0518 13 6 4.3431 -5.3613 3.5252 14 1 3.5154 -5.5689 2.8633 15 6 4.3498 -5.8777 4.8036 16 7 5.3576 -5.6245 5.6098 17 14 2.9281 -6.9380 5.3901 18 1 3.2120 -8.3623 5.0802 19 1 2.7606 -6.7744 6.8565 20 1 1.6814 -6.5203 4.6998 21 6 5.7233 -4.9090 0.5575 22 6 7.1385 -4.4753 0.1703 23 6 7.6362 -5.3374 -0.9916 24 6 8.9989 -4.8238 -1.4605 25 6 7.7703 -6.7894 -0.5284 26 6 2.1983 -1.1971 0.0008 27 1 -0.3632 -0.0005 1.0277 28 1 -0.3634 0.8901 -0.5134 29 1 -0.3633 -0.8898 -0.5141 30 1 1.6581 2.1325 0.0004 31 1 4.5166 2.8170 -1.0275 32 1 3.7443 3.2621 0.5132 33 1 5.2858 2.3723 0.5148 34 1 5.3517 0.0003 0.0060 35 1 3.7453 -3.2620 -0.5115 36 1 5.2867 -2.3719 -0.5114 37 1 6.4152 -5.0812 3.0986 38 1 5.5762 -3.6275 3.6908 39 1 5.3624 -5.9881 6.5091 40 1 5.7342 -5.9561 0.8601 41 1 5.0585 -4.7848 -0.2974 42 1 7.1276 -3.4282 -0.1323 43 1 7.8033 -4.5996 1.0251 44 1 6.9244 -5.2830 -1.8153 45 1 9.7108 -4.8782 -0.6369 46 1 9.3533 -5.4377 -2.2886 47 1 8.9035 -3.7893 -1.7905 48 1 8.4822 -6.8438 0.2952 49 1 6.7995 -7.1554 -0.1944 50 1 8.1245 -7.4037 -1.3563 51 1 1.6583 -2.1324 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597144774.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:16 Heat of formation + Delta-G solvation = -48.662057 kcal Electronic energy + Delta-G solvation = -26920.126270 eV Core-core repulsion = 23396.929499 eV Total energy + Delta-G solvation = -3523.196771 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.78769 -38.67319 -36.74108 -34.46528 -33.39466 -33.28021 -32.51363 -29.18380 -28.51855 -27.22477 -27.05090 -26.55271 -26.24610 -23.24136 -22.85212 -20.63518 -20.60087 -19.86029 -18.20053 -16.47510 -16.29628 -16.16990 -15.74727 -15.47547 -14.97429 -14.39583 -14.27323 -13.97159 -13.91102 -13.74144 -13.52290 -13.17305 -12.81747 -12.76869 -12.69458 -12.50119 -12.47145 -12.41128 -12.12999 -11.96938 -11.74897 -11.41948 -11.33793 -11.25507 -11.17016 -10.87937 -10.82129 -10.80228 -10.78962 -10.56483 -10.46794 -10.30586 -10.09431 -9.57882 -8.92810 -8.41161 -8.34252 -8.32629 -7.59429 -6.01737 -4.06048 1.55773 1.58059 3.30911 3.37695 3.41340 3.50426 3.78063 4.12434 4.47325 4.83855 4.88593 4.91262 4.93946 4.97892 5.03675 5.28064 5.29827 5.34276 5.39510 5.39683 5.45480 5.49290 5.58542 5.65158 5.66109 5.70489 5.72395 5.73704 5.76671 5.79363 5.82795 5.88480 5.91348 5.93930 6.03617 6.17788 6.19890 6.28246 6.31525 6.34992 6.51493 6.57351 6.70885 6.72836 6.85042 7.10445 7.23701 7.48851 7.60080 7.95243 8.27189 8.48090 8.93961 9.16679 9.58997 11.06279 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.007987 B = 0.004436 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3504.978148 B = 6310.117043 C = 8774.824634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.084 4.084 3 C -0.128 4.128 4 C -0.085 4.085 5 C -0.111 4.111 6 C -0.112 4.112 7 C -0.045 4.045 8 C -0.106 4.106 9 C 0.507 3.493 10 O -0.532 6.532 11 N -0.598 5.598 12 C 0.248 3.752 13 C -0.524 4.524 14 H 0.056 0.944 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.110 3.890 22 C -0.134 4.134 23 C -0.093 4.093 24 C -0.146 4.146 25 C -0.151 4.151 26 C -0.110 4.110 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.116 0.884 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.031 0.969 38 H 0.042 0.958 39 H 0.262 0.738 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.054 0.946 46 H 0.051 0.949 47 H 0.051 0.949 48 H 0.056 0.944 49 H 0.061 0.939 50 H 0.049 0.951 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.459 7.816 -17.530 19.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.084 4.084 3 C -0.146 4.146 4 C -0.085 4.085 5 C -0.168 4.168 6 C -0.130 4.130 7 C -0.046 4.046 8 C -0.146 4.146 9 C 0.293 3.707 10 O -0.409 6.409 11 N -0.330 5.330 12 C 0.129 3.871 13 C -0.563 4.563 14 H 0.074 0.926 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.014 4.014 22 C -0.172 4.172 23 C -0.112 4.112 24 C -0.203 4.203 25 C -0.208 4.208 26 C -0.128 4.128 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.134 0.866 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.135 0.865 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.049 0.951 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.071 0.929 48 H 0.075 0.925 49 H 0.080 0.920 50 H 0.068 0.932 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.319 8.134 -16.811 18.678 hybrid contribution -0.657 -0.804 0.492 1.149 sum -0.338 7.330 -16.319 17.893 Atomic orbital electron populations 1.20762 0.91466 1.02275 1.02348 1.19796 0.95792 0.93068 0.99739 1.20784 0.93474 0.97219 1.03108 1.19783 0.93783 0.95040 0.99942 1.20753 0.99985 0.94189 1.01846 1.20794 0.99372 0.91459 1.01351 1.19329 0.93498 0.93839 0.97926 1.20802 1.01338 0.95514 0.96913 1.20157 0.78991 0.81518 0.90017 1.90696 1.50236 1.53827 1.46143 1.48229 1.54825 1.21053 1.08889 1.19234 0.96323 0.95890 0.75693 1.21434 1.05793 1.30601 0.98432 0.92558 1.24924 0.96133 0.96589 0.96423 1.69939 1.30733 1.45172 1.07572 0.86528 0.82739 0.80359 0.77990 1.20662 1.21111 1.19930 1.21533 0.93666 0.96689 0.89501 1.22122 0.97758 0.99122 0.98232 1.21056 0.97019 0.95471 0.97677 1.21832 0.97034 1.00607 1.00858 1.21911 1.02471 0.95520 1.00923 1.20834 0.93498 0.97518 1.00959 0.91193 0.91896 0.91689 0.86596 0.91523 0.91787 0.91599 0.86526 0.88719 0.88781 0.95128 0.94034 0.92786 0.89810 0.91828 0.92274 0.91236 0.91376 0.92691 0.93020 0.92940 0.92508 0.92001 0.93216 0.86399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.01 36.01 0.36 -0.86 16 2 C -0.08 -1.17 5.88 -104.62 -0.62 -1.79 16 3 C -0.13 -1.70 9.36 -39.59 -0.37 -2.07 16 4 C -0.09 -1.16 5.88 -104.62 -0.62 -1.78 16 5 C -0.11 -1.15 10.01 36.01 0.36 -0.79 16 6 C -0.11 -1.68 9.36 -39.58 -0.37 -2.05 16 7 C -0.05 -0.73 4.37 -104.63 -0.46 -1.18 16 8 C -0.11 -1.63 4.38 -29.03 -0.13 -1.75 16 9 C 0.51 10.67 7.67 -10.99 -0.08 10.59 16 10 O -0.53 -13.82 15.61 5.55 0.09 -13.73 16 11 N -0.60 -12.59 2.46 -175.06 -0.43 -13.02 16 12 C 0.25 6.51 5.16 -5.20 -0.03 6.48 16 13 C -0.52 -14.94 9.39 -34.44 -0.32 -15.26 16 14 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 17 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 21 C 0.11 1.75 4.97 -4.04 -0.02 1.73 16 22 C -0.13 -1.80 5.01 -26.73 -0.13 -1.93 16 23 C -0.09 -1.01 2.92 -90.62 -0.26 -1.27 16 24 C -0.15 -1.42 9.19 37.15 0.34 -1.07 16 25 C -0.15 -1.68 8.95 37.16 0.33 -1.35 16 26 C -0.11 -1.71 9.36 -39.59 -0.37 -2.08 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 29 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 30 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 33 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 34 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 35 H 0.09 1.27 7.34 -51.93 -0.38 0.89 16 36 H 0.09 1.21 7.13 -51.93 -0.37 0.84 16 37 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 38 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.08 1.41 6.49 -51.93 -0.34 1.07 16 41 H 0.06 0.85 6.44 -51.93 -0.33 0.52 16 42 H 0.06 0.76 7.22 -51.93 -0.38 0.39 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.06 0.73 6.56 -51.93 -0.34 0.39 16 50 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 412.14 15.07 6.21 6.21 Total: -1.00 -33.76 412.14 -10.14 -43.90 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -9.24 Total: 0.46 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -2.48 Total: -14.78 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.31 Total: -39.11 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.09 Total: -13.73 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.76 -10.14 -43.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597144774.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.764 kcal (2) G-P(sol) polarization free energy of solvation -33.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds