Wall clock time and date at job start Tue Mar 31 2020 11:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38234 * 119.99503 * 2 1 4 4 C 1.38231 * 119.99892 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.00319 * 180.02562 * 4 3 2 6 6 C 1.38243 * 120.00070 * 359.90902 * 4 3 2 7 7 C 1.38235 * 119.99602 * 0.07188 * 6 4 3 8 8 C 1.50701 * 119.99808 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.47148 * 89.99755 * 8 7 6 10 10 O 1.21286 * 119.99909 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00373 * 179.97438 * 9 8 7 12 12 C 1.46492 * 120.00345 * 180.02562 * 11 9 8 13 13 C 1.50699 * 109.47213 * 90.00246 * 12 11 9 14 14 H 1.07995 * 119.99687 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99998 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99743 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00038 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47598 * 89.99388 * 17 15 13 19 19 H 1.48500 * 109.47353 * 209.99800 * 17 15 13 20 20 H 1.48499 * 109.47124 * 329.99645 * 17 15 13 21 21 C 1.46500 * 119.99697 * 0.02562 * 11 9 8 22 22 C 1.52997 * 109.47405 * 89.99405 * 21 11 9 23 23 C 1.52998 * 109.47340 * 179.97438 * 22 21 11 24 24 C 1.52993 * 109.47242 * 175.00310 * 23 22 21 25 25 C 1.53003 * 109.47128 * 295.00379 * 23 22 21 26 26 C 1.38230 * 120.00326 * 359.97438 * 7 6 4 27 27 H 1.08999 * 109.46630 * 269.97351 * 1 2 3 28 28 H 1.08992 * 109.47454 * 29.97431 * 1 2 3 29 29 H 1.08996 * 109.46937 * 149.97950 * 1 2 3 30 30 H 1.07997 * 120.00455 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.47060 * 269.91029 * 5 4 3 32 32 H 1.08998 * 109.46941 * 29.90973 * 5 4 3 33 33 H 1.08998 * 109.47482 * 149.91122 * 5 4 3 34 34 H 1.08000 * 119.99728 * 180.34119 * 6 4 3 35 35 H 1.08993 * 109.47341 * 210.00461 * 8 7 6 36 36 H 1.09001 * 109.46864 * 330.00546 * 8 7 6 37 37 H 1.09000 * 109.47579 * 210.00775 * 12 11 9 38 38 H 1.09002 * 109.47216 * 330.00066 * 12 11 9 39 39 H 0.97008 * 119.99498 * 180.02562 * 16 15 13 40 40 H 1.08998 * 109.47120 * 209.99674 * 21 11 9 41 41 H 1.09004 * 109.46914 * 329.99446 * 21 11 9 42 42 H 1.08998 * 109.47201 * 300.00219 * 22 21 11 43 43 H 1.09004 * 109.47051 * 60.00125 * 22 21 11 44 44 H 1.09004 * 109.46916 * 55.00368 * 23 22 21 45 45 H 1.08996 * 109.47434 * 60.00340 * 24 23 22 46 46 H 1.09004 * 109.47283 * 180.02562 * 24 23 22 47 47 H 1.08999 * 109.47602 * 300.00061 * 24 23 22 48 48 H 1.08996 * 109.47185 * 299.99438 * 25 23 22 49 49 H 1.08999 * 109.47464 * 60.00233 * 25 23 22 50 50 H 1.09004 * 109.46967 * 179.97438 * 25 23 22 51 51 H 1.08001 * 120.00371 * 179.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.3339 2.5025 0.0000 6 6 4.2717 0.0001 0.0008 7 6 3.5806 -1.1970 0.0012 8 6 4.3341 -2.5021 0.0021 9 6 4.5849 -2.9364 1.4233 10 8 4.1902 -2.2536 2.3446 11 7 5.2470 -4.0840 1.6704 12 6 5.4903 -4.5064 3.0518 13 6 4.3431 -5.3613 3.5252 14 1 3.5154 -5.5689 2.8633 15 6 4.3498 -5.8777 4.8036 16 7 5.3576 -5.6245 5.6098 17 14 2.9281 -6.9380 5.3901 18 1 3.2120 -8.3623 5.0802 19 1 2.7606 -6.7744 6.8565 20 1 1.6814 -6.5203 4.6998 21 6 5.7233 -4.9090 0.5575 22 6 7.1385 -4.4753 0.1703 23 6 7.6362 -5.3374 -0.9916 24 6 8.9989 -4.8238 -1.4605 25 6 7.7703 -6.7894 -0.5284 26 6 2.1983 -1.1971 0.0008 27 1 -0.3632 -0.0005 1.0277 28 1 -0.3634 0.8901 -0.5134 29 1 -0.3633 -0.8898 -0.5141 30 1 1.6581 2.1325 0.0004 31 1 4.5166 2.8170 -1.0275 32 1 3.7443 3.2621 0.5132 33 1 5.2858 2.3723 0.5148 34 1 5.3517 0.0003 0.0060 35 1 3.7453 -3.2620 -0.5115 36 1 5.2867 -2.3719 -0.5114 37 1 6.4152 -5.0812 3.0986 38 1 5.5762 -3.6275 3.6908 39 1 5.3624 -5.9881 6.5091 40 1 5.7342 -5.9561 0.8601 41 1 5.0585 -4.7848 -0.2974 42 1 7.1276 -3.4282 -0.1323 43 1 7.8033 -4.5996 1.0251 44 1 6.9244 -5.2830 -1.8153 45 1 9.7108 -4.8782 -0.6369 46 1 9.3533 -5.4377 -2.2886 47 1 8.9035 -3.7893 -1.7905 48 1 8.4822 -6.8438 0.2952 49 1 6.7995 -7.1554 -0.1944 50 1 8.1245 -7.4037 -1.3563 51 1 1.6583 -2.1324 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597144774.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:15 Heat of formation + Delta-G solvation = -65.592083 kcal Electronic energy + Delta-G solvation = -26920.860411 eV Core-core repulsion = 23396.929499 eV Total energy + Delta-G solvation = -3523.930912 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.14078 -40.01511 -37.95961 -36.08912 -34.77164 -34.35574 -34.29029 -30.77231 -29.72684 -28.47092 -27.93560 -27.71920 -27.53950 -24.96049 -24.37302 -21.89274 -21.60591 -20.81768 -19.77467 -18.61759 -17.90585 -17.36043 -17.06637 -16.85684 -16.33406 -15.97407 -15.65464 -15.12544 -15.03626 -14.75324 -14.66900 -14.38652 -14.12718 -13.98247 -13.87827 -13.82175 -13.65024 -13.33897 -13.32089 -13.20677 -13.05502 -12.91966 -12.67715 -12.60100 -12.54289 -12.32706 -12.28378 -12.11991 -11.89016 -11.84144 -11.78410 -11.56562 -11.47856 -11.36841 -10.64963 -10.62524 -9.47300 -9.40721 -9.38580 -8.23007 -6.37795 0.44974 0.50327 1.34093 1.37339 1.47494 1.85991 2.29283 2.43523 2.87513 3.06340 3.69138 3.83739 3.87348 3.94182 3.97322 4.06579 4.18566 4.24492 4.31443 4.38995 4.44345 4.53728 4.56732 4.61252 4.70079 4.71367 4.75768 4.81214 4.85509 4.86115 4.87153 4.98529 5.01012 5.03276 5.07426 5.10004 5.17771 5.19252 5.24768 5.30329 5.38290 5.38702 5.52441 5.56765 5.60385 5.65448 5.66835 5.75348 5.86669 6.06493 6.18749 6.69846 6.81667 7.28187 7.51484 8.83988 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.007987 B = 0.004436 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3504.978148 B = 6310.117043 C = 8774.824634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.093 4.093 3 C -0.135 4.135 4 C -0.092 4.092 5 C -0.109 4.109 6 C -0.132 4.132 7 C -0.067 4.067 8 C -0.089 4.089 9 C 0.500 3.500 10 O -0.592 6.592 11 N -0.602 5.602 12 C 0.265 3.735 13 C -0.540 4.540 14 H 0.052 0.948 15 C 0.008 3.992 16 N -0.929 5.929 17 Si 0.966 3.034 18 H -0.262 1.262 19 H -0.281 1.281 20 H -0.273 1.273 21 C 0.106 3.894 22 C -0.125 4.125 23 C -0.086 4.086 24 C -0.144 4.144 25 C -0.152 4.152 26 C -0.135 4.135 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.142 0.858 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.019 0.981 38 H -0.007 1.007 39 H 0.267 0.733 40 H 0.072 0.928 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.042 0.958 44 H 0.090 0.910 45 H 0.043 0.957 46 H 0.067 0.933 47 H 0.060 0.940 48 H 0.041 0.959 49 H 0.051 0.949 50 H 0.069 0.931 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.478 7.997 -20.119 21.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.093 4.093 3 C -0.153 4.153 4 C -0.092 4.092 5 C -0.166 4.166 6 C -0.150 4.150 7 C -0.067 4.067 8 C -0.128 4.128 9 C 0.289 3.711 10 O -0.473 6.473 11 N -0.332 5.332 12 C 0.144 3.856 13 C -0.579 4.579 14 H 0.071 0.929 15 C -0.191 4.191 16 N -0.569 5.569 17 Si 0.790 3.210 18 H -0.187 1.187 19 H -0.207 1.207 20 H -0.198 1.198 21 C -0.016 4.016 22 C -0.164 4.164 23 C -0.105 4.105 24 C -0.202 4.202 25 C -0.210 4.210 26 C -0.153 4.153 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.160 0.840 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.037 0.963 38 H 0.011 0.989 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.117 0.883 42 H 0.087 0.913 43 H 0.061 0.939 44 H 0.108 0.892 45 H 0.063 0.937 46 H 0.086 0.914 47 H 0.079 0.921 48 H 0.060 0.940 49 H 0.070 0.930 50 H 0.088 0.912 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.596 8.291 -19.455 21.157 hybrid contribution -0.338 -0.806 1.307 1.572 sum -0.934 7.486 -18.148 19.654 Atomic orbital electron populations 1.20808 0.89486 1.03827 1.02555 1.20193 0.97443 0.92834 0.98812 1.21169 0.93668 0.98111 1.02334 1.20213 0.94368 0.95930 0.98697 1.20805 0.99643 0.92816 1.03292 1.21032 0.99929 0.91935 1.02063 1.19489 0.93934 0.94259 0.99051 1.20748 1.03287 0.96082 0.92711 1.21174 0.77452 0.80506 0.92003 1.90656 1.52538 1.55536 1.48562 1.48235 1.54947 1.21949 1.08117 1.18642 0.95400 0.93224 0.78333 1.21695 1.06175 1.31066 0.98950 0.92944 1.25852 0.98892 0.97865 0.96492 1.70064 1.32661 1.46153 1.07999 0.85440 0.78971 0.79198 0.77369 1.18654 1.20655 1.19805 1.21836 0.95817 0.95270 0.88666 1.22037 0.95520 1.00354 0.98484 1.21038 0.98224 0.94383 0.96878 1.21815 0.95922 1.01415 1.01007 1.21925 1.01589 0.96290 1.01169 1.21039 0.93730 0.98329 1.02196 0.91505 0.89639 0.90938 0.84032 0.89499 0.90585 0.91766 0.85928 0.86307 0.85806 0.96290 0.98935 0.92464 0.90985 0.88284 0.91276 0.93940 0.89181 0.93739 0.91395 0.92131 0.94022 0.92981 0.91243 0.86500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.23 10.01 71.24 0.71 -1.52 16 2 C -0.09 -2.50 5.88 -19.87 -0.12 -2.61 16 3 C -0.14 -3.38 9.36 22.27 0.21 -3.17 16 4 C -0.09 -2.39 5.88 -19.86 -0.12 -2.51 16 5 C -0.11 -2.04 10.01 71.24 0.71 -1.33 16 6 C -0.13 -3.88 9.36 22.27 0.21 -3.67 16 7 C -0.07 -2.11 4.37 -19.87 -0.09 -2.20 16 8 C -0.09 -2.65 4.38 29.10 0.13 -2.52 16 9 C 0.50 21.53 7.67 87.66 0.67 22.20 16 10 O -0.59 -32.28 15.61 -3.05 -0.05 -32.33 16 11 N -0.60 -26.10 2.46 -826.17 -2.03 -28.13 16 12 C 0.27 14.77 5.16 85.63 0.44 15.21 16 13 C -0.54 -31.90 9.39 25.60 0.24 -31.66 16 14 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 15 C 0.01 0.46 5.46 84.65 0.46 0.92 16 16 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 17 Si 0.97 45.82 29.54 68.60 2.03 47.84 16 18 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 21 C 0.11 3.33 4.97 86.38 0.43 3.76 16 22 C -0.13 -3.28 5.01 30.59 0.15 -3.13 16 23 C -0.09 -1.69 2.92 -10.80 -0.03 -1.72 16 24 C -0.14 -2.47 9.19 71.98 0.66 -1.81 16 25 C -0.15 -3.22 8.95 71.98 0.64 -2.57 16 26 C -0.13 -4.16 9.36 22.27 0.21 -3.95 16 27 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.08 1.32 8.08 -2.39 -0.02 1.30 16 29 H 0.07 1.34 8.09 -2.39 -0.02 1.32 16 30 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 31 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 1.24 8.08 -2.39 -0.02 1.22 16 33 H 0.06 1.22 8.09 -2.39 -0.02 1.20 16 34 H 0.12 3.30 8.06 -2.91 -0.02 3.28 16 35 H 0.12 2.93 7.34 -2.39 -0.02 2.92 16 36 H 0.12 2.90 7.13 -2.39 -0.02 2.88 16 37 H 0.02 1.08 8.07 -2.39 -0.02 1.06 16 38 H -0.01 -0.48 7.42 -2.39 -0.02 -0.50 16 39 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 40 H 0.07 2.44 6.49 -2.39 -0.02 2.42 16 41 H 0.10 2.40 6.44 -2.38 -0.02 2.39 16 42 H 0.07 1.67 7.22 -2.39 -0.02 1.65 16 43 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 44 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 47 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.05 1.19 6.56 -2.39 -0.02 1.17 16 50 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 51 H 0.12 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -77.70 412.14 6.64 -71.07 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.87 Total: 20.99 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 5.53 Total: -22.28 kcal Atomic # 7 Polarization: -83.55 SS G_CDS: -1.74 Total: -85.29 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -0.05 Total: -32.33 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -77.70 6.64 -71.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597144774.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.474 kcal (2) G-P(sol) polarization free energy of solvation -77.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds