Wall clock time and date at job start Tue Mar 31 2020 12:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47381 * 2 1 4 4 C 1.50699 * 109.47117 * 120.00333 * 2 1 3 5 5 C 1.38378 * 119.92773 * 299.99896 * 4 2 1 6 6 C 1.38335 * 120.29189 * 180.02562 * 5 4 2 7 7 C 1.37980 * 120.14769 * 359.97438 * 6 5 4 8 8 C 1.39552 * 119.85117 * 0.02562 * 7 6 5 9 9 C 1.47850 * 120.14420 * 180.02562 * 8 7 6 10 10 O 1.21553 * 119.99857 * 149.87970 * 9 8 7 11 11 N 1.34767 * 120.00043 * 329.88039 * 9 8 7 12 12 C 1.46505 * 119.99833 * 6.30934 * 11 9 8 13 13 C 1.50699 * 109.46954 * 98.47667 * 12 11 9 14 14 H 1.07992 * 120.00325 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99588 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00512 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99516 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47475 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46980 * 120.00778 * 17 15 13 20 20 H 1.48498 * 109.47238 * 240.00166 * 17 15 13 21 21 C 1.46498 * 120.00343 * 186.31049 * 11 9 8 22 22 C 1.53007 * 109.47042 * 88.94794 * 21 11 9 23 23 C 1.52997 * 109.46888 * 63.55114 * 22 21 11 24 24 C 1.53002 * 109.47056 * 183.54713 * 22 21 11 25 25 C 1.53001 * 109.47354 * 303.54919 * 22 21 11 26 26 C 1.37935 * 119.92656 * 119.99884 * 4 2 1 27 27 H 1.08992 * 109.46569 * 299.99923 * 1 2 3 28 28 H 1.09003 * 109.47061 * 59.99787 * 1 2 3 29 29 H 1.08995 * 109.47284 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46949 * 240.00279 * 2 1 3 31 31 H 1.08994 * 109.47675 * 300.00466 * 3 2 1 32 32 H 1.09004 * 109.46851 * 60.00219 * 3 2 1 33 33 H 1.09002 * 109.47623 * 179.97438 * 3 2 1 34 34 H 1.08005 * 119.85333 * 0.02562 * 5 4 2 35 35 H 1.08007 * 119.92408 * 179.97438 * 6 5 4 36 36 H 1.08003 * 120.07451 * 180.02562 * 7 6 5 37 37 H 1.09000 * 109.46868 * 218.47353 * 12 11 9 38 38 H 1.08997 * 109.47384 * 338.47437 * 12 11 9 39 39 H 0.96991 * 120.00722 * 179.97438 * 16 15 13 40 40 H 1.08993 * 109.47545 * 208.95100 * 21 11 9 41 41 H 1.09000 * 109.47172 * 328.95400 * 21 11 9 42 42 H 1.09003 * 109.47133 * 59.99932 * 23 22 21 43 43 H 1.08996 * 109.47250 * 179.97438 * 23 22 21 44 44 H 1.08997 * 109.47194 * 299.99939 * 23 22 21 45 45 H 1.09008 * 109.46683 * 60.00324 * 24 22 21 46 46 H 1.09000 * 109.47400 * 180.02562 * 24 22 21 47 47 H 1.08994 * 109.47356 * 300.00564 * 24 22 21 48 48 H 1.09001 * 109.46513 * 65.37835 * 25 22 21 49 49 H 1.08999 * 109.46876 * 185.37574 * 25 22 21 50 50 H 1.08999 * 109.46870 * 305.38110 * 25 22 21 51 51 H 1.08000 * 120.07511 * 0.27816 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6971 -0.2365 2.4865 6 6 2.1545 -0.8825 3.6210 7 6 2.9484 -2.0052 3.5067 8 6 3.2902 -2.4885 2.2429 9 6 4.1400 -3.6913 2.1128 10 8 4.0118 -4.4250 1.1522 11 7 5.0567 -3.9743 3.0592 12 6 5.1183 -3.1709 4.2828 13 6 4.3894 -3.8865 5.3908 14 1 3.9262 -4.8436 5.2023 15 6 4.3138 -3.3190 6.6451 16 7 4.8774 -2.1531 6.8746 17 14 3.4097 -4.2057 8.0183 18 1 2.8679 -5.4899 7.5059 19 1 4.3495 -4.4761 9.1358 20 1 2.2932 -3.3561 8.5052 21 6 5.9917 -5.0852 2.8646 22 6 7.2396 -4.5801 2.1374 23 6 7.9595 -3.5529 3.0134 24 6 8.1767 -5.7562 1.8556 25 6 6.8303 -3.9261 0.8161 26 6 2.8252 -1.8318 1.1020 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.0757 0.6417 2.5816 35 1 1.8896 -0.5071 4.5985 36 1 3.3045 -2.5089 4.3932 37 1 6.1598 -3.0238 4.5688 38 1 4.6499 -2.2027 4.1057 39 1 4.8240 -1.7538 7.7568 40 1 6.2766 -5.4944 3.8338 41 1 5.5135 -5.8624 2.2685 42 1 8.2511 -4.0189 3.9547 43 1 8.8487 -3.1934 2.4956 44 1 7.2919 -2.7151 3.2142 45 1 7.6637 -6.4880 1.2315 46 1 9.0659 -5.3964 1.3379 47 1 8.4682 -6.2221 2.7968 48 1 6.2411 -3.0321 1.0205 49 1 7.7233 -3.6521 0.2544 50 1 6.2349 -4.6281 0.2324 51 1 3.0898 -2.1982 0.1211 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597161438.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:52 Heat of formation + Delta-G solvation = -17.522233 kcal Electronic energy + Delta-G solvation = -28228.123967 eV Core-core repulsion = 24706.277521 eV Total energy + Delta-G solvation = -3521.846447 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.04770 -38.54438 -36.57034 -35.35882 -34.24887 -32.46023 -30.53511 -29.58767 -27.72881 -27.10195 -26.92876 -26.71369 -25.83365 -23.54990 -22.62794 -22.14679 -20.40166 -18.87430 -17.99857 -16.74811 -16.27442 -16.06547 -15.56442 -14.95785 -14.73212 -14.56016 -14.25329 -13.85157 -13.63650 -13.59290 -13.35119 -13.10142 -12.99658 -12.65918 -12.45252 -12.28107 -12.24779 -11.97861 -11.83163 -11.68864 -11.29224 -11.21913 -11.11211 -11.08926 -11.05297 -10.93463 -10.77398 -10.64680 -10.48203 -10.39036 -10.24148 -10.15354 -9.74166 -9.64155 -8.97876 -8.69084 -8.39746 -7.96558 -7.63477 -6.29500 -4.38464 1.55036 1.93928 3.15809 3.25490 3.30004 3.55535 3.94185 4.24151 4.44253 4.85375 4.94016 5.01068 5.21217 5.23152 5.27708 5.33395 5.41054 5.46497 5.56155 5.63178 5.66512 5.82019 5.84539 5.90733 5.91532 5.95643 5.98790 6.03365 6.14417 6.17911 6.21828 6.22366 6.28293 6.29651 6.35039 6.41886 6.47710 6.52486 6.59705 6.62861 6.67877 6.81658 6.89387 6.97523 7.09980 7.17583 7.22155 7.51439 7.60106 7.66950 7.94491 8.36695 8.72162 9.04385 9.29830 10.74526 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009126 B = 0.005653 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3067.416704 B = 4951.533600 C = 7198.762902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.052 4.052 3 C -0.143 4.143 4 C -0.108 4.108 5 C -0.099 4.099 6 C -0.134 4.134 7 C -0.097 4.097 8 C -0.132 4.132 9 C 0.558 3.442 10 O -0.569 6.569 11 N -0.584 5.584 12 C 0.201 3.799 13 C -0.542 4.542 14 H 0.065 0.935 15 C 0.069 3.931 16 N -0.881 5.881 17 Si 0.894 3.106 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.280 1.280 21 C 0.131 3.869 22 C -0.084 4.084 23 C -0.141 4.141 24 C -0.135 4.135 25 C -0.132 4.132 26 C -0.068 4.068 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.114 0.886 35 H 0.122 0.878 36 H 0.201 0.799 37 H 0.042 0.958 38 H 0.067 0.933 39 H 0.267 0.733 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.043 0.957 44 H 0.066 0.934 45 H 0.053 0.947 46 H 0.051 0.949 47 H 0.054 0.946 48 H 0.050 0.950 49 H 0.041 0.959 50 H 0.061 0.939 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.042 3.740 -9.038 9.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.070 4.070 3 C -0.200 4.200 4 C -0.108 4.108 5 C -0.117 4.117 6 C -0.152 4.152 7 C -0.114 4.114 8 C -0.135 4.135 9 C 0.348 3.652 10 O -0.452 6.452 11 N -0.312 5.312 12 C 0.082 3.918 13 C -0.580 4.580 14 H 0.083 0.917 15 C -0.136 4.136 16 N -0.518 5.518 17 Si 0.721 3.279 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.206 1.206 21 C 0.007 3.993 22 C -0.085 4.085 23 C -0.198 4.198 24 C -0.193 4.193 25 C -0.189 4.189 26 C -0.087 4.087 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.132 0.868 35 H 0.140 0.860 36 H 0.217 0.783 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.073 0.927 48 H 0.069 0.931 49 H 0.060 0.940 50 H 0.080 0.920 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.047 3.497 -9.356 10.043 hybrid contribution -0.408 -0.304 1.039 1.157 sum -1.455 3.193 -8.317 9.027 Atomic orbital electron populations 1.21848 0.94728 1.01954 1.01458 1.20038 0.95630 0.95765 0.95595 1.21852 1.01310 0.95358 1.01480 1.19571 1.00076 0.96671 0.94467 1.21065 0.99242 0.99211 0.92198 1.21183 0.98866 0.96944 0.98184 1.23460 0.92429 0.95232 1.00264 1.19974 1.01748 0.97499 0.94280 1.18244 0.79935 0.84869 0.82174 1.90647 1.70538 1.50925 1.33049 1.47971 1.31622 1.31948 1.19652 1.20459 0.99200 0.92159 0.79981 1.21521 1.35442 1.06484 0.94598 0.91702 1.24975 0.95224 0.94892 0.98475 1.69932 1.42806 1.16064 1.23022 0.86484 0.79595 0.80082 0.81722 1.19494 1.20722 1.20624 1.21356 0.88431 0.89209 1.00283 1.20953 0.95639 0.95893 0.96048 1.21970 0.99538 0.99395 0.98913 1.21783 0.98683 0.97617 1.01248 1.21830 1.00022 1.00937 0.96123 1.20979 0.95867 0.94072 0.97787 0.92548 0.92811 0.92538 0.90770 0.92810 0.92527 0.92548 0.86830 0.86044 0.78322 0.94008 0.91571 0.92284 0.90312 0.91035 0.92644 0.93766 0.91523 0.92827 0.92960 0.92705 0.93106 0.93978 0.91986 0.86156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.01 37.16 0.33 -1.20 16 2 C -0.05 -0.63 3.09 -91.77 -0.28 -0.92 16 3 C -0.14 -1.54 9.01 37.15 0.33 -1.20 16 4 C -0.11 -1.67 4.78 -104.68 -0.50 -2.17 16 5 C -0.10 -1.54 8.71 -39.49 -0.34 -1.88 16 6 C -0.13 -2.40 10.03 -39.64 -0.40 -2.80 16 7 C -0.10 -2.00 7.48 -39.19 -0.29 -2.29 16 8 C -0.13 -2.69 5.58 -104.97 -0.59 -3.28 16 9 C 0.56 12.08 5.67 -12.33 -0.07 12.01 16 10 O -0.57 -13.03 14.66 5.32 0.08 -12.96 16 11 N -0.58 -12.24 2.01 -176.17 -0.35 -12.59 16 12 C 0.20 4.59 3.91 -5.19 -0.02 4.57 16 13 C -0.54 -13.38 7.49 -34.44 -0.26 -13.64 16 14 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 15 C 0.07 1.72 5.34 -17.82 -0.10 1.62 16 16 N -0.88 -22.70 13.29 55.43 0.74 -21.96 16 17 Si 0.89 19.69 29.54 -169.99 -5.02 14.67 16 18 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 C 0.13 2.45 4.60 -4.04 -0.02 2.43 16 22 C -0.08 -1.36 0.85 -154.51 -0.13 -1.49 16 23 C -0.14 -2.29 7.46 37.16 0.28 -2.02 16 24 C -0.14 -1.82 8.47 37.16 0.31 -1.50 16 25 C -0.13 -2.19 7.12 37.16 0.26 -1.93 16 26 C -0.07 -1.22 9.22 -39.18 -0.36 -1.58 16 27 H 0.06 0.59 7.38 -51.93 -0.38 0.21 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.89 7.87 -51.93 -0.41 0.48 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.59 7.38 -51.93 -0.38 0.21 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.11 1.47 7.08 -52.48 -0.37 1.10 16 35 H 0.12 2.04 8.06 -52.48 -0.42 1.62 16 36 H 0.20 4.60 3.08 -52.48 -0.16 4.44 16 37 H 0.04 0.99 5.79 -51.93 -0.30 0.69 16 38 H 0.07 1.57 4.05 -51.96 -0.21 1.36 16 39 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 40 H 0.08 1.48 8.06 -51.93 -0.42 1.06 16 41 H 0.07 1.37 7.37 -51.93 -0.38 0.99 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 1.22 5.84 -51.93 -0.30 0.92 16 45 H 0.05 0.70 8.14 -51.92 -0.42 0.27 16 46 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.05 0.93 6.64 -51.93 -0.34 0.59 16 49 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.06 1.09 7.28 -51.93 -0.38 0.72 16 51 H 0.12 2.09 7.81 -52.49 -0.41 1.68 16 LS Contribution 389.83 15.07 5.87 5.87 Total: -1.00 -26.46 389.83 -9.17 -35.63 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -8.65 Total: 8.59 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -1.83 Total: -17.27 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.38 Total: -34.55 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.08 Total: -12.96 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -26.46 -9.17 -35.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597161438.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.112 kcal (2) G-P(sol) polarization free energy of solvation -26.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds