Wall clock time and date at job start Tue Mar 31 2020 12:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47381 * 2 1 4 4 C 1.50699 * 109.47117 * 120.00333 * 2 1 3 5 5 C 1.38378 * 119.92773 * 299.99896 * 4 2 1 6 6 C 1.38335 * 120.29189 * 180.02562 * 5 4 2 7 7 C 1.37980 * 120.14769 * 359.97438 * 6 5 4 8 8 C 1.39552 * 119.85117 * 0.02562 * 7 6 5 9 9 C 1.47850 * 120.14420 * 180.02562 * 8 7 6 10 10 O 1.21553 * 119.99857 * 149.87970 * 9 8 7 11 11 N 1.34767 * 120.00043 * 329.88039 * 9 8 7 12 12 C 1.46505 * 119.99833 * 6.30934 * 11 9 8 13 13 C 1.50699 * 109.46954 * 98.47667 * 12 11 9 14 14 H 1.07992 * 120.00325 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99588 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00512 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99516 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47475 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46980 * 120.00778 * 17 15 13 20 20 H 1.48498 * 109.47238 * 240.00166 * 17 15 13 21 21 C 1.46498 * 120.00343 * 186.31049 * 11 9 8 22 22 C 1.53007 * 109.47042 * 88.94794 * 21 11 9 23 23 C 1.52997 * 109.46888 * 63.55114 * 22 21 11 24 24 C 1.53002 * 109.47056 * 183.54713 * 22 21 11 25 25 C 1.53001 * 109.47354 * 303.54919 * 22 21 11 26 26 C 1.37935 * 119.92656 * 119.99884 * 4 2 1 27 27 H 1.08992 * 109.46569 * 299.99923 * 1 2 3 28 28 H 1.09003 * 109.47061 * 59.99787 * 1 2 3 29 29 H 1.08995 * 109.47284 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46949 * 240.00279 * 2 1 3 31 31 H 1.08994 * 109.47675 * 300.00466 * 3 2 1 32 32 H 1.09004 * 109.46851 * 60.00219 * 3 2 1 33 33 H 1.09002 * 109.47623 * 179.97438 * 3 2 1 34 34 H 1.08005 * 119.85333 * 0.02562 * 5 4 2 35 35 H 1.08007 * 119.92408 * 179.97438 * 6 5 4 36 36 H 1.08003 * 120.07451 * 180.02562 * 7 6 5 37 37 H 1.09000 * 109.46868 * 218.47353 * 12 11 9 38 38 H 1.08997 * 109.47384 * 338.47437 * 12 11 9 39 39 H 0.96991 * 120.00722 * 179.97438 * 16 15 13 40 40 H 1.08993 * 109.47545 * 208.95100 * 21 11 9 41 41 H 1.09000 * 109.47172 * 328.95400 * 21 11 9 42 42 H 1.09003 * 109.47133 * 59.99932 * 23 22 21 43 43 H 1.08996 * 109.47250 * 179.97438 * 23 22 21 44 44 H 1.08997 * 109.47194 * 299.99939 * 23 22 21 45 45 H 1.09008 * 109.46683 * 60.00324 * 24 22 21 46 46 H 1.09000 * 109.47400 * 180.02562 * 24 22 21 47 47 H 1.08994 * 109.47356 * 300.00564 * 24 22 21 48 48 H 1.09001 * 109.46513 * 65.37835 * 25 22 21 49 49 H 1.08999 * 109.46876 * 185.37574 * 25 22 21 50 50 H 1.08999 * 109.46870 * 305.38110 * 25 22 21 51 51 H 1.08000 * 120.07511 * 0.27816 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6971 -0.2365 2.4865 6 6 2.1545 -0.8825 3.6210 7 6 2.9484 -2.0052 3.5067 8 6 3.2902 -2.4885 2.2429 9 6 4.1400 -3.6913 2.1128 10 8 4.0118 -4.4250 1.1522 11 7 5.0567 -3.9743 3.0592 12 6 5.1183 -3.1709 4.2828 13 6 4.3894 -3.8865 5.3908 14 1 3.9262 -4.8436 5.2023 15 6 4.3138 -3.3190 6.6451 16 7 4.8774 -2.1531 6.8746 17 14 3.4097 -4.2057 8.0183 18 1 2.8679 -5.4899 7.5059 19 1 4.3495 -4.4761 9.1358 20 1 2.2932 -3.3561 8.5052 21 6 5.9917 -5.0852 2.8646 22 6 7.2396 -4.5801 2.1374 23 6 7.9595 -3.5529 3.0134 24 6 8.1767 -5.7562 1.8556 25 6 6.8303 -3.9261 0.8161 26 6 2.8252 -1.8318 1.1020 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.0757 0.6417 2.5816 35 1 1.8896 -0.5071 4.5985 36 1 3.3045 -2.5089 4.3932 37 1 6.1598 -3.0238 4.5688 38 1 4.6499 -2.2027 4.1057 39 1 4.8240 -1.7538 7.7568 40 1 6.2766 -5.4944 3.8338 41 1 5.5135 -5.8624 2.2685 42 1 8.2511 -4.0189 3.9547 43 1 8.8487 -3.1934 2.4956 44 1 7.2919 -2.7151 3.2142 45 1 7.6637 -6.4880 1.2315 46 1 9.0659 -5.3964 1.3379 47 1 8.4682 -6.2221 2.7968 48 1 6.2411 -3.0321 1.0205 49 1 7.7233 -3.6521 0.2544 50 1 6.2349 -4.6281 0.2324 51 1 3.0898 -2.1982 0.1211 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597161438.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:51 Heat of formation + Delta-G solvation = -27.525896 kcal Electronic energy + Delta-G solvation = -28228.557758 eV Core-core repulsion = 24706.277521 eV Total energy + Delta-G solvation = -3522.280238 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.61985 -39.92385 -38.05785 -36.80455 -35.67242 -34.30408 -31.97073 -30.94418 -29.47523 -28.18288 -28.11349 -27.92577 -27.34102 -25.21649 -24.10950 -23.55770 -21.72307 -20.24683 -19.51240 -18.63444 -17.76560 -17.59984 -17.06530 -16.57716 -16.32583 -15.97520 -15.61352 -15.18723 -15.01410 -14.78353 -14.53368 -14.48919 -14.33997 -14.28326 -14.06050 -13.73133 -13.35791 -13.19969 -13.07780 -12.86917 -12.80914 -12.76592 -12.56852 -12.50776 -12.46604 -12.15195 -12.05218 -12.03090 -11.93601 -11.71581 -11.56685 -11.53738 -11.48911 -11.27962 -10.74141 -10.48174 -9.85083 -9.42411 -9.33982 -8.22104 -6.37154 0.08455 0.52429 1.38504 1.43259 1.52704 1.94695 2.29516 2.44133 2.94650 3.06535 3.66891 3.80021 3.89038 3.91806 4.00361 4.05253 4.16381 4.35135 4.37032 4.52171 4.56724 4.58932 4.61632 4.67492 4.74218 4.80256 4.86864 4.88585 4.90785 4.92271 4.97483 5.03896 5.04100 5.05574 5.07451 5.12934 5.19776 5.23172 5.29946 5.34251 5.36987 5.44809 5.46837 5.52135 5.61968 5.66092 5.68971 5.71751 5.88295 6.03178 6.12920 6.57388 6.81072 7.27724 7.39719 8.81377 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009126 B = 0.005653 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3067.416704 B = 4951.533600 C = 7198.762902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.052 4.052 3 C -0.140 4.140 4 C -0.095 4.095 5 C -0.087 4.087 6 C -0.139 4.139 7 C -0.122 4.122 8 C -0.154 4.154 9 C 0.553 3.447 10 O -0.590 6.590 11 N -0.584 5.584 12 C 0.218 3.782 13 C -0.548 4.548 14 H 0.048 0.952 15 C 0.035 3.965 16 N -0.905 5.905 17 Si 0.949 3.051 18 H -0.276 1.276 19 H -0.277 1.277 20 H -0.274 1.274 21 C 0.126 3.874 22 C -0.080 4.080 23 C -0.135 4.135 24 C -0.129 4.129 25 C -0.122 4.122 26 C -0.077 4.077 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.150 0.850 35 H 0.130 0.870 36 H 0.173 0.827 37 H 0.029 0.971 38 H 0.060 0.940 39 H 0.271 0.729 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.067 0.933 44 H 0.038 0.962 45 H 0.056 0.944 46 H 0.072 0.928 47 H 0.061 0.939 48 H 0.025 0.975 49 H 0.066 0.934 50 H 0.048 0.952 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.558 5.023 -9.952 11.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.071 4.071 3 C -0.198 4.198 4 C -0.095 4.095 5 C -0.104 4.104 6 C -0.157 4.157 7 C -0.139 4.139 8 C -0.157 4.157 9 C 0.343 3.657 10 O -0.474 6.474 11 N -0.311 5.311 12 C 0.098 3.902 13 C -0.586 4.586 14 H 0.066 0.934 15 C -0.167 4.167 16 N -0.542 5.542 17 Si 0.774 3.226 18 H -0.201 1.201 19 H -0.202 1.202 20 H -0.200 1.200 21 C 0.004 3.996 22 C -0.081 4.081 23 C -0.192 4.192 24 C -0.187 4.187 25 C -0.180 4.180 26 C -0.096 4.096 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.168 0.832 35 H 0.148 0.852 36 H 0.190 0.810 37 H 0.047 0.953 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.057 0.943 45 H 0.075 0.925 46 H 0.091 0.909 47 H 0.080 0.920 48 H 0.044 0.956 49 H 0.085 0.915 50 H 0.067 0.933 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.551 4.774 -10.268 11.429 hybrid contribution -0.291 -0.662 1.260 1.453 sum -1.842 4.112 -9.007 10.072 Atomic orbital electron populations 1.21840 0.93179 1.01770 1.02966 1.20138 0.96805 0.96376 0.93732 1.21842 1.00713 0.94243 1.02952 1.19997 0.98033 0.95328 0.96143 1.21392 0.98356 0.99539 0.91158 1.21333 0.98469 0.96238 0.99674 1.23168 0.94570 0.96841 0.99318 1.20006 1.02761 0.97778 0.95189 1.18546 0.79994 0.85238 0.81884 1.90610 1.71293 1.51750 1.33730 1.47972 1.31983 1.32119 1.19055 1.20159 0.97855 0.92049 0.80139 1.21555 1.35634 1.05878 0.95567 0.93383 1.25520 0.95732 0.95396 1.00067 1.69999 1.43690 1.16959 1.23591 0.85646 0.78735 0.78835 0.79366 1.20068 1.20212 1.19950 1.21507 0.89294 0.88622 1.00217 1.20932 0.94846 0.97015 0.95333 1.21887 0.99774 0.98379 0.99133 1.21736 0.98592 0.96352 1.02009 1.21727 1.00445 0.99428 0.96382 1.21117 0.96512 0.94987 0.96983 0.91870 0.90549 0.93597 0.90573 0.90543 0.91919 0.93544 0.83222 0.85206 0.81025 0.95305 0.92249 0.92002 0.90906 0.91840 0.92919 0.91378 0.94276 0.92485 0.90907 0.91975 0.95613 0.91461 0.93337 0.86080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.01 71.98 0.65 -1.92 16 2 C -0.05 -1.13 3.09 -11.54 -0.04 -1.17 16 3 C -0.14 -2.56 9.01 71.98 0.65 -1.91 16 4 C -0.09 -2.80 4.78 -19.90 -0.10 -2.90 16 5 C -0.09 -2.52 8.71 22.33 0.19 -2.33 16 6 C -0.14 -4.97 10.03 22.23 0.22 -4.74 16 7 C -0.12 -5.20 7.48 22.53 0.17 -5.03 16 8 C -0.15 -6.55 5.58 -20.09 -0.11 -6.66 16 9 C 0.55 25.13 5.67 86.79 0.49 25.62 16 10 O -0.59 -28.17 14.66 -3.88 -0.06 -28.23 16 11 N -0.58 -25.79 2.01 -829.57 -1.66 -27.45 16 12 C 0.22 10.47 3.91 85.63 0.33 10.80 16 13 C -0.55 -28.19 7.49 25.60 0.19 -28.00 16 14 H 0.05 2.58 7.81 -2.91 -0.02 2.56 16 15 C 0.04 1.79 5.34 84.66 0.45 2.24 16 16 N -0.90 -47.48 13.29 21.45 0.28 -47.19 16 17 Si 0.95 40.93 29.54 68.60 2.03 42.96 16 18 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 19 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 21 C 0.13 4.93 4.60 86.38 0.40 5.33 16 22 C -0.08 -2.59 0.85 -52.18 -0.04 -2.63 16 23 C -0.13 -4.38 7.46 71.98 0.54 -3.84 16 24 C -0.13 -3.27 8.47 71.98 0.61 -2.66 16 25 C -0.12 -4.08 7.12 71.98 0.51 -3.57 16 26 C -0.08 -2.79 9.22 22.53 0.21 -2.58 16 27 H 0.06 1.07 7.38 -2.39 -0.02 1.06 16 28 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.08 1.65 7.87 -2.39 -0.02 1.63 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.07 7.38 -2.39 -0.02 1.06 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.15 3.30 7.08 -2.91 -0.02 3.27 16 35 H 0.13 4.32 8.06 -2.91 -0.02 4.30 16 36 H 0.17 8.36 3.08 -2.91 -0.01 8.35 16 37 H 0.03 1.45 5.79 -2.39 -0.01 1.44 16 38 H 0.06 2.99 4.05 -2.42 -0.01 2.98 16 39 H 0.27 13.42 8.31 -92.72 -0.77 12.65 16 40 H 0.07 2.87 8.06 -2.39 -0.02 2.85 16 41 H 0.06 2.55 7.37 -2.39 -0.02 2.53 16 42 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.04 1.48 5.84 -2.39 -0.01 1.46 16 45 H 0.06 1.40 8.14 -2.38 -0.02 1.39 16 46 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.02 0.96 6.64 -2.39 -0.02 0.94 16 49 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 50 H 0.05 1.73 7.28 -2.39 -0.02 1.71 16 51 H 0.12 4.28 7.81 -2.91 -0.02 4.26 16 Total: -1.00 -58.99 389.83 6.82 -52.18 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: 0.90 Total: 33.69 kcal Atomic # 6 Polarization: -31.28 SS G_CDS: 5.33 Total: -25.95 kcal Atomic # 7 Polarization: -73.27 SS G_CDS: -1.38 Total: -74.65 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.06 Total: -28.23 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -58.99 6.82 -52.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597161438.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.654 kcal (2) G-P(sol) polarization free energy of solvation -58.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds