Wall clock time and date at job start Tue Mar 31 2020 11:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99569 * 2 1 4 4 H 1.48500 * 109.47056 * 239.99615 * 3 2 1 5 5 H 1.48495 * 109.47274 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47238 * 120.00126 * 3 2 1 7 7 C 1.37872 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99884 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00039 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.53881 * 60.09226 * 9 7 2 11 11 C 1.53124 * 109.50007 * 299.99707 * 9 7 2 12 12 C 1.53126 * 109.15878 * 182.40592 * 11 9 7 13 13 C 1.53037 * 109.27801 * 57.65645 * 12 11 9 14 14 N 1.46854 * 109.51886 * 300.81620 * 13 12 11 15 15 C 1.46897 * 110.99665 * 185.84309 * 14 13 12 16 16 C 1.52998 * 109.47268 * 293.95495 * 15 14 13 17 17 C 1.53001 * 109.47409 * 180.02562 * 16 15 14 18 18 C 1.52998 * 109.47409 * 180.02562 * 17 16 15 19 19 C 1.53001 * 109.47409 * 180.02562 * 18 17 16 20 20 O 1.42897 * 109.47362 * 180.02562 * 19 18 17 21 21 C 1.35899 * 117.00307 * 180.02562 * 20 19 18 22 22 C 1.38732 * 120.05408 * 359.72726 * 21 20 19 23 23 C 1.38146 * 119.94416 * 179.74602 * 22 21 20 24 24 C 1.38256 * 120.05511 * 0.50373 * 23 22 21 25 25 C 1.38274 * 120.11433 * 359.77000 * 24 23 22 26 26 C 1.38146 * 120.04857 * 359.97438 * 25 24 23 27 27 C 1.46844 * 111.19703 * 61.74789 * 14 13 12 28 28 H 0.97000 * 120.00526 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.52745 * 62.49921 * 11 9 7 30 30 H 1.08999 * 109.52030 * 302.30376 * 11 9 7 31 31 H 1.09000 * 109.49775 * 177.59563 * 12 11 9 32 32 H 1.09002 * 109.50346 * 297.67261 * 12 11 9 33 33 H 1.08994 * 109.46593 * 60.83220 * 13 12 11 34 34 H 1.09004 * 109.45972 * 180.81661 * 13 12 11 35 35 H 1.08998 * 109.47712 * 53.95369 * 15 14 13 36 36 H 1.09003 * 109.47441 * 173.95685 * 15 14 13 37 37 H 1.08999 * 109.47139 * 300.00315 * 16 15 14 38 38 H 1.09004 * 109.47207 * 59.99992 * 16 15 14 39 39 H 1.08999 * 109.47199 * 300.00243 * 17 16 15 40 40 H 1.09004 * 109.46972 * 59.99813 * 17 16 15 41 41 H 1.08999 * 109.47139 * 300.00280 * 18 17 16 42 42 H 1.09004 * 109.47207 * 59.99957 * 18 17 16 43 43 H 1.08999 * 109.47199 * 300.00243 * 19 18 17 44 44 H 1.09004 * 109.46972 * 59.99813 * 19 18 17 45 45 H 1.08007 * 120.02521 * 359.97438 * 22 21 20 46 46 H 1.08001 * 119.96966 * 180.23269 * 23 22 21 47 47 H 1.08001 * 119.94864 * 179.75085 * 24 23 22 48 48 H 1.07994 * 119.97652 * 179.97438 * 25 24 23 49 49 H 1.08001 * 120.02015 * 179.97438 * 26 25 24 50 50 H 1.09002 * 109.46133 * 58.27161 * 27 14 13 51 51 H 1.09002 * 109.46165 * 178.24800 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6257 -2.5589 -0.8901 11 6 0.3702 -2.5807 1.2503 12 6 -0.3455 -3.9342 1.2731 13 6 0.6947 -5.0563 1.2418 14 7 1.5113 -4.9347 0.0274 15 6 2.4289 -6.0740 -0.1063 16 6 3.4553 -6.0380 1.0277 17 6 4.4114 -7.2243 0.8882 18 6 5.4375 -7.1887 2.0225 19 6 6.3939 -8.3746 1.8826 20 8 7.3519 -8.3416 2.9424 21 6 8.2817 -9.3325 2.9647 22 6 8.2688 -10.3195 1.9899 23 6 9.2183 -11.3227 2.0118 24 6 10.1745 -11.3495 3.0100 25 6 10.1861 -10.3702 3.9860 26 6 9.2420 -9.3619 3.9655 27 6 2.2450 -3.6628 0.0061 28 1 -0.4851 0.8400 -0.0004 29 1 -0.3678 -1.7788 1.2288 30 1 0.9911 -2.4819 2.1407 31 1 -0.9412 -4.0155 2.1823 32 1 -0.9966 -4.0164 0.4028 33 1 1.3362 -4.9815 2.1198 34 1 0.1880 -6.0214 1.2434 35 1 1.8631 -7.0042 -0.0547 36 1 2.9444 -6.0150 -1.0649 37 1 4.0212 -5.1078 0.9762 38 1 2.9399 -6.0971 1.9864 39 1 3.8459 -8.1547 0.9394 40 1 4.9268 -7.1648 -0.0705 41 1 6.0031 -6.2583 1.9717 42 1 4.9218 -7.2485 2.9810 43 1 5.8287 -9.3052 1.9331 44 1 6.9096 -8.3144 0.9241 45 1 7.5193 -10.3015 1.2124 46 1 9.2109 -12.0892 1.2509 47 1 10.9135 -12.1369 3.0277 48 1 10.9337 -10.3935 4.7650 49 1 9.2512 -8.5974 4.7283 50 1 2.8793 -3.5946 0.8899 51 1 2.8642 -3.6157 -0.8898 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597177481.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:39 Heat of formation + Delta-G solvation = -38.111154 kcal Electronic energy + Delta-G solvation = -25565.914596 eV Core-core repulsion = 22043.175347 eV Total energy + Delta-G solvation = -3522.739249 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.39912 -38.62336 -37.82437 -35.59154 -33.63307 -32.01955 -31.34809 -30.36858 -29.84406 -29.08216 -25.74468 -24.92002 -23.68787 -22.84908 -22.09007 -21.46526 -21.22204 -20.68004 -18.54398 -18.23609 -16.65382 -16.43944 -16.35135 -16.04377 -15.27976 -15.01981 -14.76746 -14.43195 -14.15609 -14.13099 -13.77434 -13.57365 -13.37290 -13.15344 -12.69108 -12.64490 -12.31350 -12.09837 -11.98464 -11.93836 -11.61680 -11.35924 -11.30149 -11.16582 -10.98757 -10.94690 -10.87495 -10.77181 -10.64226 -10.33636 -9.99428 -9.78260 -9.43348 -9.36414 -9.00294 -8.68146 -8.53261 -8.27592 -7.56848 -5.94844 -4.01069 0.98022 1.10783 2.86941 3.33559 3.38267 3.40700 3.44707 4.41255 4.44058 4.51357 4.60267 4.60696 4.71310 4.77055 4.89111 4.95690 5.01657 5.03351 5.16841 5.31747 5.34844 5.37543 5.41432 5.63959 5.65487 5.69504 5.73488 5.83421 5.86162 5.90684 5.97097 6.05412 6.06530 6.09814 6.17749 6.17927 6.36710 6.40004 6.43791 6.48948 6.55812 6.75709 6.79763 7.01213 7.12561 7.25127 7.43714 7.70709 7.77934 7.87209 8.11728 8.20692 8.51090 9.02843 9.63013 11.11002 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018802 B = 0.001903 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.818151 B =14712.590065 C =15670.465008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.052 0.948 9 C 0.053 3.947 10 H 0.033 0.967 11 C -0.110 4.110 12 C -0.119 4.119 13 C 0.062 3.938 14 N -0.538 5.538 15 C 0.057 3.943 16 C -0.159 4.159 17 C -0.109 4.109 18 C -0.119 4.119 19 C 0.060 3.940 20 O -0.315 6.315 21 C 0.133 3.867 22 C -0.211 4.211 23 C -0.081 4.081 24 C -0.163 4.163 25 C -0.081 4.081 26 C -0.155 4.155 27 C 0.066 3.934 28 H 0.260 0.740 29 H 0.090 0.910 30 H 0.029 0.971 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.025 0.975 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.128 0.872 46 H 0.124 0.876 47 H 0.122 0.878 48 H 0.128 0.872 49 H 0.130 0.870 50 H 0.023 0.977 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.486 -22.399 5.270 27.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.553 4.553 8 H 0.070 0.930 9 C 0.035 3.965 10 H 0.051 0.949 11 C -0.148 4.148 12 C -0.157 4.157 13 C -0.066 4.066 14 N -0.261 5.261 15 C -0.072 4.072 16 C -0.198 4.198 17 C -0.148 4.148 18 C -0.157 4.157 19 C -0.015 4.015 20 O -0.229 6.229 21 C 0.087 3.913 22 C -0.230 4.230 23 C -0.099 4.099 24 C -0.182 4.182 25 C -0.099 4.099 26 C -0.174 4.174 27 C -0.061 4.061 28 H 0.070 0.930 29 H 0.108 0.892 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.146 0.854 46 H 0.142 0.858 47 H 0.140 0.860 48 H 0.146 0.854 49 H 0.148 0.852 50 H 0.041 0.959 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.949 -22.091 4.980 26.597 hybrid contribution 1.026 0.758 0.559 1.393 sum 14.976 -21.333 5.539 26.647 Atomic orbital electron populations 1.69881 1.05818 1.26380 1.50640 1.24934 0.94829 0.98911 0.95179 0.86701 0.79623 0.83358 0.78537 1.20326 1.21330 1.20401 1.21109 0.92751 0.90721 1.50731 0.92955 1.18673 0.92672 0.90396 0.94808 0.94888 1.21645 1.00013 0.94707 0.98437 1.21690 0.97246 0.96601 1.00116 1.22029 0.95483 0.98509 0.90608 1.62224 1.23518 1.02611 1.37710 1.22182 0.92926 0.94643 0.97466 1.22286 0.98205 0.98473 1.00836 1.21418 0.96402 0.99212 0.97726 1.21592 0.96276 0.97360 1.00464 1.22925 0.89416 1.00050 0.89102 1.86087 1.40402 1.46282 1.50101 1.19082 0.89642 0.87936 0.94602 1.21315 1.03001 0.97496 1.01150 1.20968 0.93827 0.97241 0.97844 1.21069 1.00474 1.00274 0.96344 1.20987 0.97358 0.93412 0.98191 1.20498 0.95990 1.01402 0.99509 1.22314 0.96477 0.88550 0.98743 0.93036 0.89153 0.95252 0.93645 0.92165 0.95679 0.92642 0.91730 0.91245 0.91120 0.91866 0.91878 0.91659 0.90668 0.90852 0.92036 0.91940 0.85426 0.85833 0.85976 0.85404 0.85189 0.95901 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.47 11.35 55.43 0.63 -24.84 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.16 8.56 -34.44 -0.29 -14.45 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.05 1.34 2.26 -91.69 -0.21 1.13 16 10 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 11 C -0.11 -2.62 5.02 -26.60 -0.13 -2.75 16 12 C -0.12 -2.34 6.09 -26.65 -0.16 -2.50 16 13 C 0.06 1.08 5.05 -3.83 -0.02 1.06 16 14 N -0.54 -9.84 4.86 -234.67 -1.14 -10.98 16 15 C 0.06 0.81 5.36 -3.83 -0.02 0.78 16 16 C -0.16 -2.03 4.52 -26.73 -0.12 -2.15 16 17 C -0.11 -1.07 5.21 -26.73 -0.14 -1.20 16 18 C -0.12 -1.17 5.58 -26.73 -0.15 -1.32 16 19 C 0.06 0.54 4.74 37.16 0.18 0.72 16 20 O -0.32 -3.54 10.14 -19.42 -0.20 -3.73 16 21 C 0.13 1.38 6.69 -39.22 -0.26 1.12 16 22 C -0.21 -1.88 9.04 -39.43 -0.36 -2.24 16 23 C -0.08 -0.62 10.04 -39.61 -0.40 -1.02 16 24 C -0.16 -1.20 10.04 -39.56 -0.40 -1.59 16 25 C -0.08 -0.62 10.04 -39.60 -0.40 -1.02 16 26 C -0.16 -1.45 9.99 -39.44 -0.39 -1.84 16 27 C 0.07 1.39 4.06 -3.84 -0.02 1.38 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.03 0.44 6.75 -51.93 -0.35 0.09 16 34 H 0.06 0.86 8.06 -51.93 -0.42 0.44 16 35 H 0.06 0.83 8.06 -51.93 -0.42 0.41 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 1.03 6.51 -51.93 -0.34 0.69 16 38 H 0.06 0.84 6.68 -51.93 -0.35 0.50 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.49 7.65 -51.93 -0.40 0.09 16 44 H 0.06 0.51 7.67 -51.93 -0.40 0.11 16 45 H 0.13 0.95 6.30 -52.48 -0.33 0.62 16 46 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 47 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 48 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 49 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 50 H 0.02 0.48 6.61 -51.93 -0.34 0.14 16 51 H 0.06 1.20 8.12 -51.93 -0.42 0.78 16 LS Contribution 394.94 15.07 5.95 5.95 Total: -1.00 -29.45 394.94 -12.29 -41.74 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -9.12 Total: -0.24 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: -3.39 Total: -24.25 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.51 Total: -35.82 kcal Atomic # 8 Polarization: -3.54 SS G_CDS: -0.20 Total: -3.73 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.45 -12.29 -41.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597177481.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.626 kcal (2) G-P(sol) polarization free energy of solvation -29.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds