Wall clock time and date at job start Tue Mar 31 2020 11:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99569 * 2 1 4 4 H 1.48500 * 109.47056 * 239.99615 * 3 2 1 5 5 H 1.48495 * 109.47274 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47238 * 120.00126 * 3 2 1 7 7 C 1.37872 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99884 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00039 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.53881 * 60.09226 * 9 7 2 11 11 C 1.53124 * 109.50007 * 299.99707 * 9 7 2 12 12 C 1.53126 * 109.15878 * 182.40592 * 11 9 7 13 13 C 1.53037 * 109.27801 * 57.65645 * 12 11 9 14 14 N 1.46854 * 109.51886 * 300.81620 * 13 12 11 15 15 C 1.46897 * 110.99665 * 185.84309 * 14 13 12 16 16 C 1.52998 * 109.47268 * 293.95495 * 15 14 13 17 17 C 1.53001 * 109.47409 * 180.02562 * 16 15 14 18 18 C 1.52998 * 109.47409 * 180.02562 * 17 16 15 19 19 C 1.53001 * 109.47409 * 180.02562 * 18 17 16 20 20 O 1.42897 * 109.47362 * 180.02562 * 19 18 17 21 21 C 1.35899 * 117.00307 * 180.02562 * 20 19 18 22 22 C 1.38732 * 120.05408 * 359.72726 * 21 20 19 23 23 C 1.38146 * 119.94416 * 179.74602 * 22 21 20 24 24 C 1.38256 * 120.05511 * 0.50373 * 23 22 21 25 25 C 1.38274 * 120.11433 * 359.77000 * 24 23 22 26 26 C 1.38146 * 120.04857 * 359.97438 * 25 24 23 27 27 C 1.46844 * 111.19703 * 61.74789 * 14 13 12 28 28 H 0.97000 * 120.00526 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.52745 * 62.49921 * 11 9 7 30 30 H 1.08999 * 109.52030 * 302.30376 * 11 9 7 31 31 H 1.09000 * 109.49775 * 177.59563 * 12 11 9 32 32 H 1.09002 * 109.50346 * 297.67261 * 12 11 9 33 33 H 1.08994 * 109.46593 * 60.83220 * 13 12 11 34 34 H 1.09004 * 109.45972 * 180.81661 * 13 12 11 35 35 H 1.08998 * 109.47712 * 53.95369 * 15 14 13 36 36 H 1.09003 * 109.47441 * 173.95685 * 15 14 13 37 37 H 1.08999 * 109.47139 * 300.00315 * 16 15 14 38 38 H 1.09004 * 109.47207 * 59.99992 * 16 15 14 39 39 H 1.08999 * 109.47199 * 300.00243 * 17 16 15 40 40 H 1.09004 * 109.46972 * 59.99813 * 17 16 15 41 41 H 1.08999 * 109.47139 * 300.00280 * 18 17 16 42 42 H 1.09004 * 109.47207 * 59.99957 * 18 17 16 43 43 H 1.08999 * 109.47199 * 300.00243 * 19 18 17 44 44 H 1.09004 * 109.46972 * 59.99813 * 19 18 17 45 45 H 1.08007 * 120.02521 * 359.97438 * 22 21 20 46 46 H 1.08001 * 119.96966 * 180.23269 * 23 22 21 47 47 H 1.08001 * 119.94864 * 179.75085 * 24 23 22 48 48 H 1.07994 * 119.97652 * 179.97438 * 25 24 23 49 49 H 1.08001 * 120.02015 * 179.97438 * 26 25 24 50 50 H 1.09002 * 109.46133 * 58.27161 * 27 14 13 51 51 H 1.09002 * 109.46165 * 178.24800 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6257 -2.5589 -0.8901 11 6 0.3702 -2.5807 1.2503 12 6 -0.3455 -3.9342 1.2731 13 6 0.6947 -5.0563 1.2418 14 7 1.5113 -4.9347 0.0274 15 6 2.4289 -6.0740 -0.1063 16 6 3.4553 -6.0380 1.0277 17 6 4.4114 -7.2243 0.8882 18 6 5.4375 -7.1887 2.0225 19 6 6.3939 -8.3746 1.8826 20 8 7.3519 -8.3416 2.9424 21 6 8.2817 -9.3325 2.9647 22 6 8.2688 -10.3195 1.9899 23 6 9.2183 -11.3227 2.0118 24 6 10.1745 -11.3495 3.0100 25 6 10.1861 -10.3702 3.9860 26 6 9.2420 -9.3619 3.9655 27 6 2.2450 -3.6628 0.0061 28 1 -0.4851 0.8400 -0.0004 29 1 -0.3678 -1.7788 1.2288 30 1 0.9911 -2.4819 2.1407 31 1 -0.9412 -4.0155 2.1823 32 1 -0.9966 -4.0164 0.4028 33 1 1.3362 -4.9815 2.1198 34 1 0.1880 -6.0214 1.2434 35 1 1.8631 -7.0042 -0.0547 36 1 2.9444 -6.0150 -1.0649 37 1 4.0212 -5.1078 0.9762 38 1 2.9399 -6.0971 1.9864 39 1 3.8459 -8.1547 0.9394 40 1 4.9268 -7.1648 -0.0705 41 1 6.0031 -6.2583 1.9717 42 1 4.9218 -7.2485 2.9810 43 1 5.8287 -9.3052 1.9331 44 1 6.9096 -8.3144 0.9241 45 1 7.5193 -10.3015 1.2124 46 1 9.2109 -12.0892 1.2509 47 1 10.9135 -12.1369 3.0277 48 1 10.9337 -10.3935 4.7650 49 1 9.2512 -8.5974 4.7283 50 1 2.8793 -3.5946 0.8899 51 1 2.8642 -3.6157 -0.8898 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597177481.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:38 Heat of formation + Delta-G solvation = -52.697061 kcal Electronic energy + Delta-G solvation = -25566.547088 eV Core-core repulsion = 22043.175347 eV Total energy + Delta-G solvation = -3523.371742 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.05863 -40.09848 -38.49913 -36.77487 -35.22669 -33.60759 -31.98595 -31.67443 -31.17608 -30.03071 -26.96550 -26.78153 -24.77426 -23.58460 -23.21273 -22.84847 -22.10278 -21.96100 -19.93627 -19.16935 -18.41497 -17.39795 -17.04517 -16.82174 -16.69318 -16.24144 -16.09527 -15.60411 -15.34072 -15.24452 -14.84090 -14.58368 -14.39605 -14.34973 -14.25895 -13.85349 -13.69004 -13.30827 -13.09954 -12.86195 -12.80012 -12.71071 -12.55859 -12.51863 -12.30228 -12.18253 -12.04047 -11.88971 -11.71073 -11.66879 -11.57113 -11.35841 -11.27671 -10.83603 -10.65208 -10.37188 -9.96068 -9.17989 -9.01309 -8.07655 -6.21925 0.38489 0.48622 1.40665 1.41920 1.49554 2.19438 2.42487 2.84321 3.18766 3.21681 3.77441 3.86157 3.90424 3.99712 4.07325 4.10386 4.22198 4.25203 4.28740 4.32383 4.37682 4.48038 4.51930 4.54978 4.55564 4.66997 4.69131 4.72467 4.80756 4.86150 4.89227 4.94165 4.96010 5.05220 5.08295 5.10638 5.20094 5.22656 5.31861 5.36789 5.42780 5.44232 5.47943 5.54126 5.59858 5.63591 5.87393 5.98243 6.14458 6.23148 6.43934 6.46176 6.47887 6.90885 7.45716 8.96623 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018802 B = 0.001903 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.818151 B =14712.590065 C =15670.465008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 0.953 3.047 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.050 0.950 9 C 0.049 3.951 10 H -0.006 1.006 11 C -0.103 4.103 12 C -0.113 4.113 13 C 0.066 3.934 14 N -0.552 5.552 15 C 0.057 3.943 16 C -0.152 4.152 17 C -0.099 4.099 18 C -0.115 4.115 19 C 0.061 3.939 20 O -0.338 6.338 21 C 0.106 3.894 22 C -0.220 4.220 23 C -0.087 4.087 24 C -0.166 4.166 25 C -0.085 4.085 26 C -0.176 4.176 27 C 0.084 3.916 28 H 0.260 0.740 29 H 0.056 0.944 30 H 0.020 0.980 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.028 0.972 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.058 0.942 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.139 0.861 46 H 0.147 0.853 47 H 0.147 0.853 48 H 0.151 0.849 49 H 0.129 0.871 50 H 0.020 0.980 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.782 -24.808 5.403 29.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.575 4.575 8 H 0.068 0.932 9 C 0.030 3.970 10 H 0.013 0.987 11 C -0.141 4.141 12 C -0.151 4.151 13 C -0.062 4.062 14 N -0.275 5.275 15 C -0.071 4.071 16 C -0.191 4.191 17 C -0.137 4.137 18 C -0.153 4.153 19 C -0.013 4.013 20 O -0.252 6.252 21 C 0.061 3.939 22 C -0.239 4.239 23 C -0.105 4.105 24 C -0.184 4.184 25 C -0.103 4.103 26 C -0.194 4.194 27 C -0.044 4.044 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.039 0.961 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.157 0.843 46 H 0.165 0.835 47 H 0.165 0.835 48 H 0.168 0.832 49 H 0.147 0.853 50 H 0.038 0.962 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.256 -24.521 5.113 29.328 hybrid contribution 0.637 1.464 0.512 1.677 sum 15.893 -23.056 5.625 28.562 Atomic orbital electron populations 1.70030 1.07135 1.27085 1.51167 1.25727 0.95685 1.02312 0.94839 0.85693 0.78444 0.79208 0.78786 1.19643 1.20873 1.19755 1.21492 0.92916 0.92254 1.50832 0.93167 1.18622 0.93124 0.91560 0.93661 0.98740 1.21446 0.99045 0.96350 0.97270 1.21614 0.97692 0.95024 1.00789 1.22020 0.94862 0.98867 0.90408 1.62144 1.24456 1.02489 1.38378 1.22283 0.92902 0.93732 0.98146 1.22169 0.98158 0.98804 0.99962 1.21321 0.95855 0.98545 0.97985 1.21514 0.96335 0.97181 1.00280 1.22948 0.89222 1.00107 0.89074 1.86039 1.41098 1.47112 1.50989 1.19366 0.90161 0.88561 0.95781 1.21529 1.03750 0.97486 1.01122 1.21329 0.93351 0.97323 0.98449 1.21449 1.00660 1.00519 0.95739 1.21311 0.97231 0.92832 0.98879 1.20728 0.96684 1.02273 0.99731 1.21926 0.95220 0.88937 0.98322 0.93087 0.92513 0.96119 0.91368 0.93205 0.95336 0.89355 0.89221 0.90878 0.93447 0.92283 0.89903 0.90795 0.92169 0.91447 0.90662 0.91122 0.84335 0.83533 0.83526 0.83174 0.85300 0.96222 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.05 11.35 21.45 0.24 -53.81 16 2 C 0.01 0.74 5.30 84.65 0.45 1.19 16 3 Si 0.95 44.46 29.54 68.60 2.03 46.49 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 7 C -0.54 -30.39 8.56 25.60 0.22 -30.17 16 8 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 9 C 0.05 2.56 2.26 -11.49 -0.03 2.54 16 10 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 11 C -0.10 -5.05 5.02 30.68 0.15 -4.89 16 12 C -0.11 -4.42 6.09 30.65 0.19 -4.23 16 13 C 0.07 2.19 5.05 86.32 0.44 2.62 16 14 N -0.55 -19.56 4.86 -896.36 -4.35 -23.92 16 15 C 0.06 1.49 5.36 86.30 0.46 1.96 16 16 C -0.15 -3.64 4.52 30.59 0.14 -3.50 16 17 C -0.10 -1.70 5.21 30.59 0.16 -1.54 16 18 C -0.12 -2.15 5.58 30.59 0.17 -1.98 16 19 C 0.06 1.04 4.74 71.98 0.34 1.38 16 20 O -0.34 -7.56 10.14 -92.42 -0.94 -8.50 16 21 C 0.11 2.17 6.69 22.50 0.15 2.32 16 22 C -0.22 -3.63 9.04 22.37 0.20 -3.43 16 23 C -0.09 -1.15 10.04 22.25 0.22 -0.93 16 24 C -0.17 -2.05 10.04 22.28 0.22 -1.82 16 25 C -0.08 -1.17 10.04 22.26 0.22 -0.95 16 26 C -0.18 -3.23 9.99 22.36 0.22 -3.01 16 27 C 0.08 3.57 4.06 86.33 0.35 3.92 16 28 H 0.26 14.64 8.31 -92.71 -0.77 13.86 16 29 H 0.06 3.15 6.15 -2.39 -0.01 3.13 16 30 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.03 0.94 6.75 -2.39 -0.02 0.92 16 34 H 0.09 2.40 8.06 -2.38 -0.02 2.38 16 35 H 0.09 1.95 8.06 -2.39 -0.02 1.93 16 36 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.05 1.36 6.51 -2.39 -0.02 1.34 16 38 H 0.06 1.47 6.68 -2.38 -0.02 1.45 16 39 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 41 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 42 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 43 H 0.08 1.05 7.65 -2.39 -0.02 1.03 16 44 H 0.07 1.06 7.67 -2.38 -0.02 1.04 16 45 H 0.14 1.83 6.30 -2.91 -0.02 1.81 16 46 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 47 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 48 H 0.15 1.27 8.06 -2.91 -0.02 1.24 16 49 H 0.13 2.23 8.06 -2.91 -0.02 2.20 16 50 H 0.02 0.85 6.61 -2.39 -0.02 0.83 16 51 H 0.05 2.23 8.12 -2.39 -0.02 2.21 16 Total: -1.00 -65.89 394.94 2.13 -63.75 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.87 Total: 16.50 kcal Atomic # 6 Polarization: -44.81 SS G_CDS: 4.29 Total: -40.52 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: -4.11 Total: -77.73 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -0.94 Total: -8.50 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -65.89 2.13 -63.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597177481.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.058 kcal (2) G-P(sol) polarization free energy of solvation -65.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds