Wall clock time and date at job start Tue Mar 31 2020 11:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99962 * 2 1 4 4 H 1.48498 * 109.46967 * 239.99662 * 3 2 1 5 5 H 1.48503 * 109.46839 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47286 * 119.99522 * 3 2 1 7 7 C 1.37880 * 120.00428 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00018 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99487 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.51136 * 299.92329 * 9 7 2 11 11 C 1.53120 * 109.50290 * 60.00267 * 9 7 2 12 12 C 1.53119 * 109.16202 * 177.63586 * 11 9 7 13 13 C 1.53044 * 109.27589 * 302.34077 * 12 11 9 14 14 N 1.46847 * 109.51335 * 59.18419 * 13 12 11 15 15 C 1.46899 * 110.99862 * 174.15436 * 14 13 12 16 16 C 1.52999 * 109.47036 * 66.05037 * 15 14 13 17 17 C 1.52999 * 109.46926 * 179.97438 * 16 15 14 18 18 C 1.53008 * 109.46965 * 179.97438 * 17 16 15 19 19 C 1.52999 * 109.46965 * 179.97438 * 18 17 16 20 20 O 1.42902 * 109.46830 * 180.02562 * 19 18 17 21 21 C 1.35902 * 116.99693 * 179.97438 * 20 19 18 22 22 C 1.38731 * 120.06062 * 359.72453 * 21 20 19 23 23 C 1.38135 * 119.94649 * 179.74305 * 22 21 20 24 24 C 1.38268 * 120.05937 * 0.50961 * 23 22 21 25 25 C 1.38271 * 120.10751 * 359.76716 * 24 23 22 26 26 C 1.38145 * 120.05595 * 359.97438 * 25 24 23 27 27 C 1.46847 * 111.20163 * 298.24410 * 14 13 12 28 28 H 0.97001 * 119.99568 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.52850 * 57.72670 * 11 9 7 30 30 H 1.09003 * 109.57279 * 297.56457 * 11 9 7 31 31 H 1.09000 * 109.50507 * 182.40742 * 12 11 9 32 32 H 1.08999 * 109.54263 * 62.29675 * 12 11 9 33 33 H 1.09002 * 109.46396 * 179.19729 * 13 12 11 34 34 H 1.08994 * 109.46485 * 299.17654 * 13 12 11 35 35 H 1.09004 * 109.46859 * 186.04870 * 15 14 13 36 36 H 1.08996 * 109.47621 * 306.04495 * 15 14 13 37 37 H 1.08999 * 109.46741 * 299.99794 * 16 15 14 38 38 H 1.08997 * 109.47402 * 59.99850 * 16 15 14 39 39 H 1.08999 * 109.47343 * 299.99549 * 17 16 15 40 40 H 1.08996 * 109.47800 * 60.00057 * 17 16 15 41 41 H 1.08999 * 109.46834 * 299.99998 * 18 17 16 42 42 H 1.08997 * 109.46747 * 60.00076 * 18 17 16 43 43 H 1.08999 * 109.47343 * 299.99686 * 19 18 17 44 44 H 1.08996 * 109.47576 * 59.99690 * 19 18 17 45 45 H 1.08010 * 120.02449 * 359.97438 * 22 21 20 46 46 H 1.08008 * 119.97394 * 180.23320 * 23 22 21 47 47 H 1.08000 * 119.95028 * 179.74450 * 24 23 22 48 48 H 1.08000 * 119.97446 * 179.97438 * 25 24 23 49 49 H 1.07998 * 120.03042 * 179.97438 * 26 25 24 50 50 H 1.09005 * 109.46836 * 301.74653 * 27 14 13 51 51 H 1.08995 * 109.45748 * 181.76188 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6250 -2.5579 0.8907 11 6 0.3711 -2.5813 -1.2498 12 6 -0.3454 -3.9343 -1.2721 13 6 0.6941 -5.0570 -1.2390 14 7 1.5098 -4.9348 -0.0241 15 6 2.4265 -6.0746 0.1115 16 6 3.4540 -6.0401 -1.0216 17 6 4.4092 -7.2269 -0.8801 18 6 5.4364 -7.1928 -2.0136 19 6 6.3920 -8.3792 -1.8717 20 8 7.3516 -8.3470 -2.9301 21 6 8.2810 -9.3384 -2.9505 22 6 8.2730 -10.3187 -1.9689 23 6 9.2155 -11.3283 -1.9950 24 6 10.1728 -11.3566 -2.9923 25 6 10.1864 -10.3775 -3.9685 26 6 9.2428 -9.3687 -3.9499 27 6 2.2444 -3.6634 -0.0033 28 1 -0.4849 0.8401 -0.0004 29 1 0.9926 -2.4835 -2.1398 30 1 -0.3664 -1.7789 -1.2306 31 1 -0.9404 -4.0161 -2.1816 32 1 -0.9970 -4.0161 -0.4022 33 1 0.1868 -6.0218 -1.2404 34 1 1.3364 -4.9833 -2.1165 35 1 2.9411 -6.0149 1.0705 36 1 1.8602 -7.0045 0.0603 37 1 2.9394 -6.0998 -1.9806 38 1 4.0204 -5.1102 -0.9704 39 1 4.9238 -7.1668 0.0789 40 1 3.8433 -8.1570 -0.9311 41 1 4.9214 -7.2531 -2.9724 42 1 6.0024 -6.2627 -1.9630 43 1 6.9068 -8.3184 -0.9130 44 1 5.8262 -9.3095 -1.9219 45 1 7.5282 -10.2947 -1.1871 46 1 9.2073 -12.0939 -1.2331 47 1 10.9113 -12.1444 -3.0086 48 1 10.9354 -10.4014 -4.7463 49 1 9.2541 -8.6039 -4.7124 50 1 2.8793 -3.5962 -0.8868 51 1 2.8629 -3.6161 0.8929 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597177482.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:42 Heat of formation + Delta-G solvation = -38.114487 kcal Electronic energy + Delta-G solvation = -25565.749850 eV Core-core repulsion = 22043.010456 eV Total energy + Delta-G solvation = -3522.739394 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.39828 -38.62371 -37.82393 -35.59149 -33.63260 -32.01940 -31.34813 -30.36824 -29.84371 -29.08213 -25.74452 -24.92009 -23.68763 -22.84918 -22.09004 -21.46522 -21.22248 -20.68026 -18.54364 -18.23712 -16.65392 -16.43970 -16.35092 -16.04367 -15.27958 -15.02074 -14.76610 -14.43249 -14.15378 -14.13201 -13.77442 -13.57688 -13.37017 -13.15322 -12.69168 -12.64415 -12.31351 -12.09795 -11.98497 -11.93872 -11.61833 -11.35720 -11.30057 -11.16850 -10.98617 -10.94784 -10.87502 -10.77216 -10.64228 -10.33696 -9.99520 -9.78179 -9.43347 -9.36449 -9.00347 -8.68152 -8.53218 -8.27541 -7.56857 -5.94884 -4.01045 0.98065 1.10737 2.86960 3.33573 3.38251 3.40694 3.44698 4.41251 4.44042 4.51337 4.60359 4.60609 4.71307 4.77064 4.89070 4.95695 5.01662 5.03347 5.16839 5.31735 5.34832 5.37537 5.41447 5.63956 5.65481 5.69518 5.73465 5.83426 5.86149 5.90648 5.97082 6.05419 6.06537 6.09827 6.17749 6.17908 6.36677 6.39989 6.43781 6.48928 6.55814 6.75735 6.79693 7.01154 7.12530 7.25116 7.43776 7.70680 7.77940 7.87206 8.11752 8.20600 8.51090 9.02886 9.63001 11.10975 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018804 B = 0.001903 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.673002 B =14713.625161 C =15671.079818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.052 0.948 9 C 0.053 3.947 10 H 0.033 0.967 11 C -0.110 4.110 12 C -0.119 4.119 13 C 0.062 3.938 14 N -0.538 5.538 15 C 0.057 3.943 16 C -0.159 4.159 17 C -0.109 4.109 18 C -0.119 4.119 19 C 0.060 3.940 20 O -0.315 6.315 21 C 0.133 3.867 22 C -0.211 4.211 23 C -0.081 4.081 24 C -0.163 4.163 25 C -0.081 4.081 26 C -0.155 4.155 27 C 0.066 3.934 28 H 0.260 0.740 29 H 0.029 0.971 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.025 0.975 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.128 0.872 46 H 0.124 0.876 47 H 0.122 0.878 48 H 0.128 0.872 49 H 0.130 0.870 50 H 0.023 0.977 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.485 -22.409 -5.236 27.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.070 0.930 9 C 0.034 3.966 10 H 0.051 0.949 11 C -0.148 4.148 12 C -0.156 4.156 13 C -0.066 4.066 14 N -0.261 5.261 15 C -0.072 4.072 16 C -0.198 4.198 17 C -0.148 4.148 18 C -0.157 4.157 19 C -0.015 4.015 20 O -0.229 6.229 21 C 0.087 3.913 22 C -0.230 4.230 23 C -0.099 4.099 24 C -0.182 4.182 25 C -0.100 4.100 26 C -0.174 4.174 27 C -0.061 4.061 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.043 0.957 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.146 0.854 46 H 0.142 0.858 47 H 0.140 0.860 48 H 0.146 0.854 49 H 0.148 0.852 50 H 0.041 0.959 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.949 -22.100 -4.946 26.597 hybrid contribution 1.026 0.757 -0.561 1.393 sum 14.975 -21.343 -5.507 26.647 Atomic orbital electron populations 1.69885 1.05818 1.26371 1.50636 1.24937 0.94831 0.98912 0.95180 0.86701 0.79623 0.83356 0.78537 1.20406 1.21329 1.20319 1.21111 0.92750 0.90720 1.50733 0.92955 1.18672 0.92683 0.90391 0.94804 0.94884 1.21640 0.99999 0.94711 0.98439 1.21689 0.97251 0.96594 1.00113 1.22030 0.95494 0.98509 0.90601 1.62225 1.23565 1.02605 1.37667 1.22183 0.92927 0.94638 0.97473 1.22284 0.98207 0.98469 1.00837 1.21419 0.96398 0.99210 0.97733 1.21593 0.96278 0.97354 1.00469 1.22925 0.89381 1.00053 0.89136 1.86090 1.40343 1.46250 1.50188 1.19087 0.89644 0.87972 0.94563 1.21312 1.03154 0.97523 1.00968 1.20969 0.93875 0.97172 0.97865 1.21071 1.00408 1.00292 0.96392 1.20986 0.97369 0.93418 0.98177 1.20501 0.95928 1.01382 0.99587 1.22314 0.96463 0.88561 0.98744 0.93039 0.95258 0.89166 0.93646 0.92164 0.92641 0.95684 0.91245 0.91730 0.91865 0.91118 0.91659 0.91878 0.90851 0.90668 0.91948 0.92026 0.85425 0.85832 0.85974 0.85405 0.85188 0.95901 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.46 11.35 55.43 0.63 -24.84 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -14.16 8.57 -34.44 -0.30 -14.45 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.05 1.34 2.26 -91.69 -0.21 1.13 16 10 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 11 C -0.11 -2.62 5.02 -26.61 -0.13 -2.75 16 12 C -0.12 -2.34 6.09 -26.65 -0.16 -2.50 16 13 C 0.06 1.08 5.05 -3.83 -0.02 1.06 16 14 N -0.54 -9.84 4.86 -234.67 -1.14 -10.98 16 15 C 0.06 0.81 5.36 -3.83 -0.02 0.78 16 16 C -0.16 -2.03 4.52 -26.73 -0.12 -2.15 16 17 C -0.11 -1.06 5.21 -26.73 -0.14 -1.20 16 18 C -0.12 -1.17 5.58 -26.73 -0.15 -1.32 16 19 C 0.06 0.54 4.74 37.16 0.18 0.72 16 20 O -0.32 -3.54 10.14 -19.43 -0.20 -3.73 16 21 C 0.13 1.38 6.69 -39.21 -0.26 1.12 16 22 C -0.21 -1.88 9.04 -39.44 -0.36 -2.24 16 23 C -0.08 -0.62 10.04 -39.61 -0.40 -1.02 16 24 C -0.16 -1.20 10.04 -39.56 -0.40 -1.59 16 25 C -0.08 -0.62 10.04 -39.60 -0.40 -1.02 16 26 C -0.16 -1.45 9.99 -39.43 -0.39 -1.84 16 27 C 0.07 1.39 4.06 -3.83 -0.02 1.38 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 0.86 8.06 -51.93 -0.42 0.44 16 34 H 0.02 0.44 6.75 -51.93 -0.35 0.09 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.83 8.06 -51.93 -0.42 0.41 16 37 H 0.06 0.84 6.68 -51.93 -0.35 0.50 16 38 H 0.07 1.03 6.50 -51.93 -0.34 0.69 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.51 7.65 -51.93 -0.40 0.11 16 44 H 0.06 0.49 7.68 -51.93 -0.40 0.09 16 45 H 0.13 0.95 6.30 -52.48 -0.33 0.62 16 46 H 0.12 0.68 8.06 -52.48 -0.42 0.25 16 47 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 48 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 49 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 50 H 0.02 0.48 6.61 -51.93 -0.34 0.14 16 51 H 0.06 1.20 8.12 -51.93 -0.42 0.78 16 LS Contribution 394.94 15.07 5.95 5.95 Total: -1.00 -29.45 394.94 -12.28 -41.74 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -9.12 Total: -0.24 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: -3.39 Total: -24.25 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.51 Total: -35.82 kcal Atomic # 8 Polarization: -3.54 SS G_CDS: -0.20 Total: -3.73 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.45 -12.28 -41.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597177482.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.625 kcal (2) G-P(sol) polarization free energy of solvation -29.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds