Wall clock time and date at job start Tue Mar 31 2020 11:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 119.99811 * 2 1 4 4 H 1.48495 * 109.47215 * 239.99535 * 3 2 1 5 5 H 1.48496 * 109.47611 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47265 * 120.00050 * 3 2 1 7 7 C 1.37873 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99945 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00101 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47150 * 179.97438 * 10 9 7 12 12 N 1.46896 * 109.47397 * 175.05351 * 11 10 9 13 13 C 1.46892 * 111.00290 * 201.10145 * 12 11 10 14 14 C 1.50699 * 109.47323 * 151.28677 * 13 12 11 15 15 C 1.38236 * 119.99956 * 298.77320 * 14 13 12 16 16 C 1.38239 * 120.00087 * 179.76684 * 15 14 13 17 17 C 1.38236 * 119.99525 * 0.50257 * 16 15 14 18 18 C 1.38232 * 120.00491 * 359.75545 * 17 16 15 19 19 C 1.38231 * 119.99554 * 359.97438 * 18 17 16 20 20 C 1.46907 * 110.99982 * 77.14572 * 12 11 10 21 21 C 1.53000 * 110.01272 * 59.85547 * 20 12 11 22 22 O 1.42901 * 109.47123 * 180.02562 * 21 20 12 23 23 C 1.54264 * 110.02914 * 298.41769 * 20 12 11 24 24 C 1.54896 * 104.19160 * 217.10008 * 23 20 12 25 25 C 1.54888 * 102.74737 * 37.94623 * 24 23 20 26 26 C 1.53873 * 110.03434 * 181.24641 * 20 12 11 27 27 H 0.97004 * 120.00472 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47194 * 59.98985 * 9 7 2 29 29 H 1.09004 * 109.46518 * 299.99647 * 9 7 2 30 30 H 1.08994 * 109.47475 * 59.99249 * 10 9 7 31 31 H 1.09010 * 109.46924 * 299.99270 * 10 9 7 32 32 H 1.08998 * 109.47136 * 55.05224 * 11 10 9 33 33 H 1.08999 * 109.46833 * 295.05896 * 11 10 9 34 34 H 1.09007 * 109.46996 * 271.28598 * 13 12 11 35 35 H 1.08997 * 109.47676 * 31.28456 * 13 12 11 36 36 H 1.07996 * 119.99753 * 359.97438 * 15 14 13 37 37 H 1.07999 * 120.00025 * 180.23185 * 16 15 14 38 38 H 1.08005 * 119.99823 * 179.72479 * 17 16 15 39 39 H 1.07997 * 120.00067 * 179.97438 * 18 17 16 40 40 H 1.08008 * 119.99768 * 179.97438 * 19 18 17 41 41 H 1.09001 * 109.47071 * 300.00070 * 21 20 12 42 42 H 1.08999 * 109.47090 * 60.00341 * 21 20 12 43 43 H 0.96701 * 114.00286 * 180.02562 * 22 21 20 44 44 H 1.09000 * 110.48957 * 335.77739 * 23 20 12 45 45 H 1.08999 * 110.48960 * 98.42938 * 23 20 12 46 46 H 1.08991 * 110.75861 * 279.62454 * 24 23 20 47 47 H 1.09006 * 110.75378 * 156.25190 * 24 23 20 48 48 H 1.09006 * 110.48192 * 203.37721 * 25 24 23 49 49 H 1.08994 * 110.48968 * 80.73616 * 25 24 23 50 50 H 1.08999 * 110.02865 * 238.56851 * 26 20 12 51 51 H 1.08998 * 110.03074 * 0.02562 * 26 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4303 -6.1011 -0.1182 13 6 1.7627 -7.3113 -0.6155 14 6 2.7538 -8.1562 -1.3738 15 6 3.3700 -7.6520 -2.5038 16 6 4.2828 -8.4253 -3.1966 17 6 4.5715 -9.7065 -2.7653 18 6 3.9514 -10.2126 -1.6383 19 6 3.0428 -9.4373 -0.9424 20 6 3.1027 -6.3591 1.1622 21 6 2.0699 -6.7135 2.2339 22 8 2.7358 -6.9615 3.4737 23 6 3.9099 -5.1177 1.5947 24 6 5.1873 -5.7034 2.2462 25 6 5.5006 -6.9247 1.3465 26 6 4.1140 -7.5081 1.0044 27 1 -0.4851 0.8400 -0.0004 28 1 0.6246 -2.5570 -0.8896 29 1 0.6241 -2.5566 0.8904 30 1 2.8720 -3.6043 0.8904 31 1 2.8719 -3.6043 -0.8896 32 1 0.7885 -5.0077 -0.8409 33 1 0.9220 -5.0838 0.9323 34 1 1.3687 -7.8809 0.2262 35 1 0.9444 -7.0289 -1.2778 36 1 3.1409 -6.6528 -2.8435 37 1 4.7670 -8.0300 -4.0773 38 1 5.2813 -10.3123 -3.3091 39 1 4.1767 -11.2137 -1.3016 40 1 2.5579 -9.8329 -0.0621 41 1 1.3733 -5.8840 2.3556 42 1 1.5227 -7.6059 1.9301 43 1 2.1411 -7.1929 4.2002 44 1 4.1682 -4.5095 0.7278 45 1 3.3469 -4.5303 2.3200 46 1 4.9888 -6.0188 3.2704 47 1 6.0031 -4.9810 2.2144 48 1 6.0984 -7.6559 1.8907 49 1 6.0158 -6.6084 0.4396 50 1 3.8695 -8.3177 1.6920 51 1 4.1063 -7.8739 -0.0223 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599434358.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:45 Heat of formation + Delta-G solvation = -13.521695 kcal Electronic energy + Delta-G solvation = -28214.336522 eV Core-core repulsion = 24692.663551 eV Total energy + Delta-G solvation = -3521.672970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.53689 -38.80589 -36.15614 -35.28452 -33.89861 -32.29971 -30.90287 -30.80743 -28.53246 -28.37132 -26.63637 -25.13208 -24.46050 -22.56113 -22.24050 -21.09881 -20.58872 -19.70364 -18.48851 -17.69559 -16.78899 -16.25059 -15.69758 -15.53227 -15.31716 -14.93467 -14.66050 -14.49274 -14.27594 -13.82683 -13.58373 -13.39870 -13.06811 -12.89909 -12.73966 -12.55847 -12.27568 -12.08203 -11.86026 -11.47380 -11.23455 -11.09979 -10.93022 -10.88563 -10.81273 -10.74413 -10.65462 -10.50855 -10.46964 -10.29118 -10.11712 -9.71984 -9.38533 -9.11250 -8.99464 -8.87682 -8.47374 -8.29415 -8.06982 -5.96246 -3.97775 1.33949 1.43196 3.36073 3.40032 3.43032 3.71508 4.00204 4.36479 4.50128 4.65078 4.82589 4.86333 4.98065 5.02770 5.13105 5.17681 5.21545 5.34849 5.39259 5.40272 5.43731 5.51080 5.55441 5.63791 5.72203 5.85460 5.86526 5.96374 5.99669 6.05434 6.07511 6.17064 6.21275 6.25450 6.36176 6.39005 6.41776 6.46609 6.53270 6.53730 6.66729 6.75274 6.79270 6.89120 7.00683 7.22366 7.37067 7.41468 7.64348 7.72887 7.88636 8.04800 8.48767 9.09477 9.66074 11.15217 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014054 B = 0.003637 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.773021 B = 7696.619503 C = 8453.877259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.023 3.977 10 C -0.123 4.123 11 C 0.048 3.952 12 N -0.513 5.513 13 C 0.079 3.921 14 C -0.061 4.061 15 C -0.094 4.094 16 C -0.121 4.121 17 C -0.128 4.128 18 C -0.125 4.125 19 C -0.118 4.118 20 C 0.118 3.882 21 C 0.049 3.951 22 O -0.559 6.559 23 C -0.108 4.108 24 C -0.121 4.121 25 C -0.114 4.114 26 C -0.125 4.125 27 H 0.260 0.740 28 H 0.012 0.988 29 H 0.011 0.989 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.035 0.965 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.052 0.948 42 H 0.039 0.961 43 H 0.371 0.629 44 H 0.091 0.909 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.058 0.942 48 H 0.054 0.946 49 H 0.059 0.941 50 H 0.058 0.942 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.364 -21.505 0.465 22.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.160 4.160 11 C -0.079 4.079 12 N -0.236 5.236 13 C -0.049 4.049 14 C -0.062 4.062 15 C -0.112 4.112 16 C -0.139 4.139 17 C -0.146 4.146 18 C -0.143 4.143 19 C -0.136 4.136 20 C 0.028 3.972 21 C -0.031 4.031 22 O -0.362 6.362 23 C -0.145 4.145 24 C -0.159 4.159 25 C -0.152 4.152 26 C -0.162 4.162 27 H 0.069 0.931 28 H 0.030 0.970 29 H 0.029 0.971 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.145 0.855 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.217 0.783 44 H 0.110 0.890 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.076 0.924 48 H 0.072 0.928 49 H 0.078 0.922 50 H 0.076 0.924 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.074 -21.104 -0.242 22.259 hybrid contribution -0.873 0.595 0.934 1.410 sum 6.201 -20.509 0.692 21.437 Atomic orbital electron populations 1.69953 1.06050 1.26575 1.51171 1.25013 0.94815 0.99176 0.95464 0.86689 0.79602 0.83260 0.78641 1.20241 1.21383 1.20265 1.21212 0.93001 0.91031 1.50141 0.92745 1.19073 0.94064 0.91587 0.96770 1.22173 0.99577 0.92161 1.02111 1.22498 0.93878 0.91389 1.00087 1.62515 1.30929 1.04659 1.25526 1.21223 0.94452 0.91349 0.97843 1.19755 0.97470 0.93772 0.95168 1.21049 0.95858 0.99768 0.94545 1.21171 0.98308 0.94434 1.00036 1.21083 1.00315 0.96047 0.97183 1.21021 0.97607 0.99648 0.96046 1.21008 0.98726 0.94109 0.99798 1.21657 0.93105 0.96593 0.85876 1.22941 0.95793 0.98655 0.85685 1.86517 1.37541 1.92517 1.19671 1.22765 0.95332 0.95796 1.00642 1.22482 0.97273 0.96753 0.99379 1.22207 0.96653 0.97315 0.99029 1.22677 0.93925 0.96460 1.03125 0.93063 0.96956 0.97083 0.91051 0.92683 0.91364 0.94715 0.93393 0.89820 0.85491 0.86307 0.86597 0.86529 0.86644 0.92988 0.94304 0.78291 0.89025 0.91475 0.91129 0.92369 0.92760 0.92184 0.92375 0.88826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.12 -2.50 4.06 -26.73 -0.11 -2.61 16 11 C 0.05 0.80 4.80 -3.83 -0.02 0.78 16 12 N -0.51 -7.34 4.12 -219.12 -0.90 -8.24 16 13 C 0.08 0.96 4.92 -4.98 -0.02 0.94 16 14 C -0.06 -0.72 3.23 -104.62 -0.34 -1.06 16 15 C -0.09 -1.14 9.57 -39.58 -0.38 -1.51 16 16 C -0.12 -1.31 10.05 -39.58 -0.40 -1.70 16 17 C -0.13 -1.27 10.05 -39.58 -0.40 -1.66 16 18 C -0.13 -1.23 10.05 -39.59 -0.40 -1.63 16 19 C -0.12 -1.25 7.67 -39.58 -0.30 -1.55 16 20 C 0.12 1.63 0.44 -130.48 -0.06 1.58 16 21 C 0.05 0.63 5.09 37.16 0.19 0.81 16 22 O -0.56 -6.73 11.42 -35.23 -0.40 -7.13 16 23 C -0.11 -1.68 3.60 -25.07 -0.09 -1.77 16 24 C -0.12 -1.68 6.56 -24.73 -0.16 -1.85 16 25 C -0.11 -1.50 6.83 -25.07 -0.17 -1.67 16 26 C -0.12 -1.63 4.79 -25.61 -0.12 -1.75 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 28 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 1.44 4.04 -51.93 -0.21 1.23 16 31 H 0.05 1.15 8.14 -51.92 -0.42 0.73 16 32 H 0.07 1.13 7.48 -51.93 -0.39 0.74 16 33 H 0.03 0.58 5.63 -51.93 -0.29 0.28 16 34 H 0.05 0.55 5.48 -51.93 -0.28 0.26 16 35 H 0.08 1.00 7.41 -51.93 -0.38 0.62 16 36 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 37 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.12 1.09 7.95 -52.48 -0.42 0.67 16 41 H 0.05 0.73 6.13 -51.93 -0.32 0.41 16 42 H 0.04 0.45 6.19 -51.93 -0.32 0.13 16 43 H 0.37 2.89 9.12 45.56 0.42 3.31 16 44 H 0.09 1.58 5.92 -51.93 -0.31 1.27 16 45 H 0.07 1.13 7.09 -51.93 -0.37 0.77 16 46 H 0.07 1.00 7.22 -51.93 -0.37 0.62 16 47 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.06 0.75 7.37 -51.93 -0.38 0.37 16 51 H 0.09 1.23 3.25 -51.93 -0.17 1.06 16 LS Contribution 378.35 15.07 5.70 5.70 Total: -1.00 -30.99 378.35 -10.79 -41.78 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -7.57 Total: 5.05 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: -3.33 Total: -27.63 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: -0.17 Total: -34.63 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.40 Total: -7.13 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.99 -10.79 -41.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599434358.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.260 kcal (2) G-P(sol) polarization free energy of solvation -30.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds