Wall clock time and date at job start Tue Mar 31 2020 11:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47425 * 2 1 4 4 C 1.38227 * 120.00593 * 89.99678 * 3 2 1 5 5 C 1.38228 * 120.00401 * 179.97438 * 4 3 2 6 6 C 1.38231 * 120.00096 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.00386 * 179.97438 * 6 5 4 8 8 C 1.53123 * 109.52290 * 239.99892 * 7 6 5 9 9 C 1.53037 * 109.27711 * 182.37519 * 8 7 6 10 10 N 1.46851 * 109.51611 * 59.18370 * 9 8 7 11 11 C 1.46900 * 110.99544 * 174.15422 * 10 9 8 12 12 C 1.53007 * 109.46698 * 176.35476 * 11 10 9 13 13 O 1.42903 * 109.46760 * 62.28941 * 12 11 10 14 14 C 1.42907 * 113.99553 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.46637 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00461 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99849 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99824 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00226 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46999 * 59.99596 * 19 17 15 21 21 H 1.48501 * 109.47181 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47259 * 299.99714 * 19 17 15 23 23 C 1.46838 * 111.19871 * 298.24076 * 10 9 8 24 24 C 1.53041 * 109.51711 * 61.75365 * 23 10 9 25 25 C 1.38238 * 119.99748 * 0.25118 * 6 5 4 26 26 C 1.38234 * 119.99766 * 359.49475 * 25 6 5 27 27 H 1.09000 * 109.47330 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47234 * 300.00694 * 1 2 3 29 29 H 1.09002 * 109.46841 * 60.00434 * 1 2 3 30 30 H 1.09004 * 109.47234 * 239.99306 * 2 1 3 31 31 H 1.08999 * 109.46883 * 120.00086 * 2 1 3 32 32 H 1.08007 * 119.99486 * 0.02562 * 4 3 2 33 33 H 1.08001 * 120.00400 * 180.02562 * 5 4 3 34 34 H 1.09007 * 109.52149 * 0.12381 * 7 6 5 35 35 H 1.08996 * 109.50328 * 62.43569 * 8 7 6 36 36 H 1.08997 * 109.50275 * 302.31339 * 8 7 6 37 37 H 1.08997 * 109.46137 * 179.19539 * 9 8 7 38 38 H 1.09008 * 109.46263 * 299.17322 * 9 8 7 39 39 H 1.08996 * 109.47436 * 296.34910 * 11 10 9 40 40 H 1.08993 * 109.47437 * 56.36069 * 11 10 9 41 41 H 1.08996 * 109.47086 * 182.29187 * 12 11 10 42 42 H 1.08998 * 109.47300 * 302.29340 * 12 11 10 43 43 H 1.08999 * 109.47163 * 300.00348 * 14 13 12 44 44 H 1.08998 * 109.46724 * 60.00585 * 14 13 12 45 45 H 0.96997 * 120.00095 * 180.02562 * 18 17 15 46 46 H 1.09001 * 109.47432 * 301.74512 * 23 10 9 47 47 H 1.08995 * 109.45801 * 181.76456 * 23 10 9 48 48 H 1.08991 * 109.50769 * 180.86986 * 24 23 10 49 49 H 1.09011 * 109.49611 * 60.75833 * 24 23 10 50 50 H 1.08004 * 119.99660 * 179.72922 * 25 6 5 51 51 H 1.07999 * 119.99650 * 180.24955 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0725 1.1970 5 6 2.7241 3.3755 1.1970 6 6 2.9546 4.0271 -0.0002 7 6 3.4570 5.4479 -0.0003 8 6 2.4493 6.3469 -0.7220 9 6 2.9923 7.7768 -0.7709 10 7 4.2798 7.7888 -1.4772 11 6 4.7643 9.1628 -1.6650 12 6 6.1463 9.1309 -2.3209 13 8 6.0467 8.5277 -3.6126 14 6 7.2889 8.4489 -4.3146 15 6 7.0671 7.8001 -5.6566 16 1 6.0768 7.4796 -5.9444 17 6 8.1288 7.6147 -6.5165 18 7 9.3349 8.0045 -6.1658 19 14 7.8541 6.8099 -8.1797 20 1 6.8908 7.6194 -8.9683 21 1 9.1450 6.7281 -8.9093 22 1 7.3081 5.4429 -7.9840 23 6 5.2774 6.9703 -0.7766 24 6 4.8026 5.5162 -0.7277 25 6 2.7187 3.3773 -1.1973 26 6 2.2624 2.0724 -1.1972 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5140 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.0831 1.5632 2.1324 33 1 2.9045 3.8846 2.1322 34 1 3.5805 5.7906 1.0271 35 1 1.5013 6.3359 -0.1842 36 1 2.2967 5.9807 -1.7372 37 1 2.2837 8.4166 -1.2967 38 1 3.1318 8.1473 0.2447 39 1 4.0710 9.7083 -2.3050 40 1 4.8330 9.6593 -0.6972 41 1 6.5235 10.1484 -2.4232 42 1 6.8296 8.5508 -1.7008 43 1 7.6894 9.4524 -4.4582 44 1 7.9962 7.8548 -3.7358 45 1 10.0818 7.8744 -6.7709 46 1 5.4060 7.3445 0.2391 47 1 6.2283 7.0242 -1.3065 48 1 5.5359 4.9116 -0.1941 49 1 4.6871 5.1369 -1.7431 50 1 2.8947 3.8879 -2.1326 51 1 2.0820 1.5635 -2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599670127.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:46 Heat of formation + Delta-G solvation = -42.352271 kcal Electronic energy + Delta-G solvation = -26317.982230 eV Core-core repulsion = 22795.059072 eV Total energy + Delta-G solvation = -3522.923158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.08336 -38.69364 -36.63268 -35.08108 -33.16997 -32.52174 -30.99831 -30.80756 -29.80560 -28.08545 -26.63719 -24.76483 -23.31652 -22.90874 -22.69934 -22.24374 -21.11655 -20.41865 -19.35174 -16.68283 -16.34178 -16.04773 -15.70290 -15.48110 -15.21175 -14.81253 -14.36798 -14.27546 -14.10335 -14.04462 -13.85056 -13.76031 -13.50794 -13.22003 -13.01623 -12.74940 -12.44478 -12.20800 -12.12470 -11.93227 -11.59129 -11.51200 -11.27729 -11.11075 -11.09078 -11.04125 -10.80349 -10.71942 -10.67941 -10.54035 -10.25149 -10.12141 -9.84844 -9.04962 -8.97482 -8.74413 -8.53326 -8.09817 -7.97713 -6.05909 -4.06730 1.26113 1.34767 3.35866 3.38047 3.42449 3.66221 4.08001 4.39640 4.51279 4.59359 4.70153 4.79672 4.86651 4.93506 5.01886 5.09613 5.10561 5.23488 5.30416 5.30496 5.32262 5.39710 5.40432 5.46076 5.54935 5.61443 5.63003 5.64682 5.71568 5.74652 5.82128 5.87972 5.91481 5.93189 6.03191 6.04887 6.08786 6.11230 6.22724 6.30238 6.34611 6.39170 6.45241 6.53460 6.67210 6.95542 7.15124 7.34968 7.38039 7.48481 7.85842 8.22130 8.66924 9.07776 9.57880 11.05756 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011883 B = 0.002773 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.699688 B =10093.439845 C =11844.157328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.092 4.092 4 C -0.119 4.119 5 C -0.117 4.117 6 C -0.073 4.073 7 C -0.048 4.048 8 C -0.106 4.106 9 C 0.057 3.943 10 N -0.522 5.522 11 C 0.062 3.938 12 C 0.060 3.940 13 O -0.378 6.378 14 C 0.194 3.806 15 C -0.510 4.510 16 H 0.066 0.934 17 C 0.055 3.945 18 N -0.901 5.901 19 Si 0.907 3.093 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.053 3.947 24 C -0.106 4.106 25 C -0.106 4.106 26 C -0.116 4.116 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.026 0.974 39 H 0.080 0.920 40 H 0.035 0.965 41 H 0.039 0.961 42 H 0.038 0.962 43 H 0.002 0.998 44 H 0.002 0.998 45 H 0.263 0.737 46 H 0.024 0.976 47 H 0.088 0.912 48 H 0.064 0.936 49 H 0.078 0.922 50 H 0.126 0.874 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.815 -9.928 17.569 25.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.092 4.092 4 C -0.137 4.137 5 C -0.135 4.135 6 C -0.073 4.073 7 C -0.067 4.067 8 C -0.143 4.143 9 C -0.071 4.071 10 N -0.247 5.247 11 C -0.065 4.065 12 C -0.018 4.018 13 O -0.297 6.297 14 C 0.120 3.880 15 C -0.548 4.548 16 H 0.084 0.916 17 C -0.146 4.146 18 N -0.540 5.540 19 Si 0.734 3.266 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.075 4.075 24 C -0.144 4.144 25 C -0.124 4.124 26 C -0.134 4.134 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.044 0.956 39 H 0.099 0.901 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.073 0.927 46 H 0.042 0.958 47 H 0.106 0.894 48 H 0.083 0.917 49 H 0.097 0.903 50 H 0.144 0.856 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.871 -10.191 16.954 25.361 hybrid contribution 0.500 0.132 0.085 0.525 sum -15.370 -10.059 17.039 25.055 Atomic orbital electron populations 1.21746 0.94854 1.01535 1.02217 1.20525 0.96085 0.92889 1.02685 1.19852 0.99840 0.96173 0.93290 1.20937 1.00559 0.94927 0.97307 1.21020 1.00223 0.94846 0.97450 1.19878 0.98579 0.95810 0.93061 1.20242 0.95734 0.90905 0.99816 1.21634 0.97151 0.94145 1.01397 1.22071 0.92096 0.97021 0.95953 1.61813 1.02642 1.11187 1.49073 1.22123 0.97171 0.89192 0.98039 1.22351 0.94919 0.96588 0.87896 1.87973 1.34463 1.80683 1.26593 1.20173 0.81020 0.95485 0.91363 1.21019 0.95213 1.38919 0.99631 0.91567 1.24948 0.94806 0.95910 0.98920 1.69956 0.99489 1.47519 1.37073 0.86410 0.77251 0.79938 0.82958 1.20051 1.21248 1.20006 1.22170 0.96606 0.93016 0.95661 1.21641 0.95091 0.96129 1.01517 1.21106 0.98628 0.94550 0.98155 1.21035 0.99951 0.94939 0.97438 0.92543 0.92665 0.92504 0.91107 0.91275 0.86537 0.86436 0.91128 0.91859 0.90573 0.90799 0.95581 0.90113 0.94667 0.94315 0.94423 0.98046 0.98007 0.92704 0.95794 0.89383 0.91732 0.90312 0.85580 0.86254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.63 16 2 C -0.08 -0.64 6.06 -27.89 -0.17 -0.81 16 3 C -0.09 -0.90 5.13 -104.63 -0.54 -1.44 16 4 C -0.12 -1.15 9.70 -39.59 -0.38 -1.54 16 5 C -0.12 -1.20 9.67 -39.59 -0.38 -1.59 16 6 C -0.07 -0.82 4.79 -104.63 -0.50 -1.33 16 7 C -0.05 -0.55 2.43 -91.65 -0.22 -0.77 16 8 C -0.11 -1.20 5.22 -26.65 -0.14 -1.34 16 9 C 0.06 0.69 5.46 -3.83 -0.02 0.67 16 10 N -0.52 -8.00 4.67 -234.67 -1.10 -9.10 16 11 C 0.06 0.96 5.52 -3.82 -0.02 0.94 16 12 C 0.06 1.14 5.57 37.16 0.21 1.34 16 13 O -0.38 -9.25 10.23 -35.23 -0.36 -9.61 16 14 C 0.19 5.40 5.69 36.01 0.20 5.61 16 15 C -0.51 -15.24 9.43 -34.44 -0.32 -15.56 16 16 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 17 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 19 Si 0.91 22.19 29.54 -169.99 -5.02 17.17 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.05 0.77 5.05 -3.84 -0.02 0.75 16 24 C -0.11 -1.40 5.23 -26.65 -0.14 -1.54 16 25 C -0.11 -1.24 8.67 -39.58 -0.34 -1.58 16 26 C -0.12 -1.23 9.70 -39.58 -0.38 -1.62 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 31 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 33 H 0.12 1.02 7.95 -52.49 -0.42 0.60 16 34 H 0.07 0.74 7.88 -51.93 -0.41 0.34 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.96 7.31 -51.93 -0.38 0.58 16 37 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 38 H 0.03 0.30 8.14 -51.92 -0.42 -0.13 16 39 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.04 0.69 6.05 -51.93 -0.31 0.37 16 43 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 44 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.09 1.49 5.79 -51.93 -0.30 1.19 16 48 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 49 H 0.08 1.18 7.33 -51.92 -0.38 0.80 16 50 H 0.13 1.50 7.06 -52.48 -0.37 1.13 16 51 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 401.32 15.07 6.05 6.05 Total: -1.00 -31.83 401.32 -11.90 -43.73 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -9.30 Total: -2.75 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: -2.91 Total: -18.92 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: -0.36 Total: -35.66 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: -0.36 Total: -9.61 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.83 -11.90 -43.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599670127.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.373 kcal (2) G-P(sol) polarization free energy of solvation -31.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds