Wall clock time and date at job start Tue Mar 31 2020 11:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38267 * 119.94218 * 2 1 4 4 C 1.38147 * 120.05301 * 180.25535 * 3 2 1 5 5 C 1.38732 * 119.94354 * 359.47158 * 4 3 2 6 6 O 1.35899 * 120.05556 * 180.30195 * 5 4 3 7 7 C 1.42904 * 117.00097 * 358.15783 * 6 5 4 8 8 C 1.53125 * 109.52160 * 275.11756 * 7 6 5 9 9 C 1.53042 * 109.27537 * 182.43872 * 8 7 6 10 10 N 1.46845 * 109.52221 * 59.17818 * 9 8 7 11 11 C 1.46899 * 110.99982 * 174.16043 * 10 9 8 12 12 C 1.53005 * 109.47316 * 200.13626 * 11 10 9 13 13 H 1.08998 * 109.46862 * 305.31371 * 12 11 10 14 14 C 1.53004 * 109.46806 * 65.31125 * 12 11 10 15 15 C 1.52998 * 109.47257 * 185.30707 * 12 11 10 16 16 C 1.50697 * 109.47020 * 174.99818 * 15 12 11 17 17 H 1.07996 * 120.00137 * 0.02562 * 16 15 12 18 18 C 1.37883 * 119.99996 * 180.02562 * 16 15 12 19 19 N 1.31518 * 119.99624 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00017 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46879 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46890 * 120.00042 * 20 18 16 23 23 H 1.48496 * 109.47155 * 239.99815 * 20 18 16 24 24 C 1.46846 * 111.20137 * 298.25785 * 10 9 8 25 25 C 1.53036 * 109.52415 * 61.74162 * 24 10 9 26 26 C 1.38733 * 119.88978 * 0.27016 * 5 4 3 27 27 C 1.38149 * 119.94208 * 0.02562 * 26 5 4 28 28 H 1.09003 * 109.47165 * 270.25566 * 1 2 3 29 29 H 1.09007 * 109.47238 * 30.25350 * 1 2 3 30 30 H 1.08995 * 109.47266 * 150.25298 * 1 2 3 31 31 H 1.07995 * 119.97610 * 0.02562 * 3 2 1 32 32 H 1.07996 * 120.02736 * 179.74096 * 4 3 2 33 33 H 1.08997 * 109.51837 * 35.30538 * 7 6 5 34 34 H 1.08997 * 109.49822 * 302.37924 * 8 7 6 35 35 H 1.08998 * 109.50163 * 62.49611 * 8 7 6 36 36 H 1.09003 * 109.46299 * 299.16560 * 9 8 7 37 37 H 1.08995 * 109.45176 * 179.18787 * 9 8 7 38 38 H 1.08996 * 109.47090 * 320.13663 * 11 10 9 39 39 H 1.08998 * 109.47188 * 80.13844 * 11 10 9 40 40 H 1.08997 * 109.46883 * 185.03193 * 14 12 11 41 41 H 1.09004 * 109.47018 * 305.02233 * 14 12 11 42 42 H 1.08998 * 109.47380 * 65.02637 * 14 12 11 43 43 H 1.09002 * 109.47485 * 295.00290 * 15 12 11 44 44 H 1.09006 * 109.46516 * 55.00170 * 15 12 11 45 45 H 0.97002 * 119.99419 * 180.02562 * 19 18 16 46 46 H 1.09007 * 109.46254 * 301.72634 * 24 10 9 47 47 H 1.08995 * 109.45679 * 181.75386 * 24 10 9 48 48 H 1.08997 * 109.50578 * 180.88314 * 25 24 10 49 49 H 1.08997 * 109.53381 * 60.78233 * 25 24 10 50 50 H 1.07992 * 120.02635 * 180.02562 * 26 5 4 51 51 H 1.07994 * 119.97052 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5786 1.2008 -0.0053 5 6 4.2734 0.0000 0.0004 6 8 5.6324 0.0001 0.0014 7 6 6.2812 1.2725 -0.0446 8 6 6.3999 1.7340 -1.4998 9 6 7.1492 3.0676 -1.5474 10 7 8.4836 2.9020 -0.9572 11 6 9.2824 4.1253 -1.1104 12 6 10.7671 3.7868 -0.9614 13 1 10.9292 3.2724 -0.0142 14 6 11.2018 2.8804 -2.1149 15 6 11.5895 5.0767 -0.9887 16 6 13.0370 4.7554 -0.7195 17 1 13.3401 3.7333 -0.5467 18 6 13.9744 5.7662 -0.6938 19 7 13.6051 7.0109 -0.9038 20 14 15.7687 5.3678 -0.3608 21 1 15.9217 3.9045 -0.1592 22 1 16.5940 5.7964 -1.5185 23 1 16.2170 6.0857 0.8594 24 6 8.3946 2.5049 0.4537 25 6 7.6825 1.1545 0.5611 26 6 3.5786 -1.2007 0.0058 27 6 2.1971 -1.1980 0.0049 28 1 -0.3634 0.0046 1.0277 29 1 -0.3634 0.8878 -0.5178 30 1 -0.3633 -0.8922 -0.5099 31 1 1.6558 2.1326 0.0004 32 1 4.1172 2.1369 -0.0096 33 1 5.6991 1.9988 0.5225 34 1 6.9482 0.9877 -2.0746 35 1 5.4037 1.8609 -1.9237 36 1 6.5932 3.8169 -0.9837 37 1 7.2479 3.3917 -2.5833 38 1 9.1047 4.5541 -2.0966 39 1 8.9953 4.8451 -0.3440 40 1 12.2343 2.5669 -1.9613 41 1 10.5568 2.0023 -2.1499 42 1 11.1238 3.4262 -3.0552 43 1 11.4975 5.5457 -1.9684 44 1 11.2203 5.7592 -0.2231 45 1 14.2646 7.7220 -0.8861 46 1 7.8328 3.2568 1.0080 47 1 9.3980 2.4205 0.8711 48 1 7.6028 0.8675 1.6095 49 1 8.2508 0.3987 0.0190 50 1 4.1172 -2.1367 0.0107 51 1 1.6558 -2.1325 0.0087 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602446072.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:20 Heat of formation + Delta-G solvation = -34.977993 kcal Electronic energy + Delta-G solvation = -26267.960719 eV Core-core repulsion = 22745.357334 eV Total energy + Delta-G solvation = -3522.603385 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.68354 -39.02123 -37.63469 -35.20794 -32.88784 -32.13646 -31.41474 -31.10304 -30.78718 -27.03937 -26.66020 -25.74876 -23.95299 -23.44009 -22.79739 -22.06187 -21.26033 -19.87011 -18.86778 -18.41585 -16.66024 -16.28963 -15.76706 -15.49893 -15.13223 -14.99056 -14.74278 -14.51132 -14.32542 -14.01050 -13.80327 -13.71596 -13.65469 -13.06667 -12.94520 -12.65626 -12.48221 -12.29271 -12.21022 -11.84554 -11.68607 -11.58405 -11.36796 -11.28797 -11.16820 -10.93734 -10.84777 -10.74719 -10.56004 -10.40774 -10.26572 -10.22418 -9.60163 -9.27191 -9.10649 -8.94821 -8.32317 -8.24877 -8.06571 -5.97117 -3.97886 1.07066 1.16733 2.98299 3.32499 3.40182 3.44413 3.48226 4.03988 4.48050 4.48933 4.53150 4.58867 4.61228 4.67552 4.87350 4.96322 5.06289 5.09223 5.14131 5.26760 5.28181 5.38291 5.38894 5.44483 5.46957 5.54377 5.59024 5.63700 5.74598 5.77977 5.82217 5.93666 5.99495 6.02805 6.05190 6.12029 6.17497 6.21314 6.33525 6.39213 6.55246 6.55312 6.72608 7.02016 7.15450 7.21227 7.26893 7.35054 7.41230 7.70465 7.86423 8.03460 8.47925 9.08878 9.65567 11.14445 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.039740 B = 0.001997 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.402657 B =14016.434462 C =14292.878412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.132 4.132 3 C -0.079 4.079 4 C -0.208 4.208 5 C 0.132 3.868 6 O -0.308 6.308 7 C 0.085 3.915 8 C -0.138 4.138 9 C 0.059 3.941 10 N -0.535 5.535 11 C 0.061 3.939 12 C -0.078 4.078 13 H 0.055 0.945 14 C -0.122 4.122 15 C 0.026 3.974 16 C -0.510 4.510 17 H 0.057 0.943 18 C 0.054 3.946 19 N -0.897 5.897 20 Si 0.889 3.111 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.058 3.942 25 C -0.109 4.109 26 C -0.153 4.153 27 C -0.081 4.081 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.122 0.878 32 H 0.130 0.870 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.029 0.971 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.031 0.969 40 H 0.051 0.949 41 H 0.044 0.956 42 H 0.038 0.962 43 H 0.015 0.985 44 H 0.012 0.988 45 H 0.258 0.742 46 H 0.031 0.969 47 H 0.091 0.909 48 H 0.073 0.927 49 H 0.084 0.916 50 H 0.129 0.871 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.293 -13.840 1.719 28.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.132 4.132 3 C -0.097 4.097 4 C -0.226 4.226 5 C 0.087 3.913 6 O -0.222 6.222 7 C 0.029 3.971 8 C -0.176 4.176 9 C -0.070 4.070 10 N -0.260 5.260 11 C -0.066 4.066 12 C -0.097 4.097 13 H 0.073 0.927 14 C -0.180 4.180 15 C -0.011 4.011 16 C -0.549 4.549 17 H 0.075 0.925 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.717 3.283 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.212 1.212 24 C -0.070 4.070 25 C -0.147 4.147 26 C -0.171 4.171 27 C -0.099 4.099 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.140 0.860 32 H 0.147 0.853 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.034 0.966 44 H 0.030 0.970 45 H 0.068 0.932 46 H 0.049 0.951 47 H 0.109 0.891 48 H 0.092 0.908 49 H 0.103 0.897 50 H 0.147 0.853 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -24.845 -14.192 1.456 28.649 hybrid contribution 0.597 0.904 0.592 1.234 sum -24.248 -13.288 2.047 27.726 Atomic orbital electron populations 1.20707 0.91193 1.02554 1.02052 1.19813 0.96154 0.93087 1.04189 1.20831 0.93297 0.97663 0.97956 1.21316 0.95289 0.97476 1.08558 1.19052 0.82846 0.94006 0.95415 1.86140 1.15811 1.32429 1.87796 1.22606 0.93889 0.83467 0.97112 1.22128 1.00653 0.98606 0.96182 1.22019 0.89427 0.95130 1.00381 1.61970 1.13117 1.35277 1.15608 1.22326 0.95046 0.88685 1.00563 1.21184 0.91147 0.99124 0.98251 0.92662 1.21575 1.00370 0.98442 0.97581 1.19147 0.94003 0.90980 0.97013 1.21275 0.92688 0.93419 1.47484 0.92511 1.25030 0.98857 0.95124 0.95627 1.69980 1.33871 0.99374 1.50499 0.86576 0.85459 0.78451 0.77766 1.19740 1.21107 1.21151 1.22071 1.01146 0.94467 0.89279 1.21645 0.92892 0.99090 1.01096 1.20444 0.93754 0.96394 1.06545 1.20831 0.93003 0.97703 0.98402 0.91536 0.91783 0.91751 0.85970 0.85272 0.91243 0.89804 0.91367 0.95252 0.90184 0.91361 0.95022 0.93031 0.93726 0.94263 0.96628 0.96999 0.93195 0.95053 0.89090 0.90848 0.89747 0.85256 0.85572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.01 36.00 0.36 -0.26 16 2 C -0.13 -1.10 5.88 -104.60 -0.62 -1.71 16 3 C -0.08 -0.70 9.69 -39.60 -0.38 -1.08 16 4 C -0.21 -2.07 8.42 -39.43 -0.33 -2.40 16 5 C 0.13 1.46 6.59 -39.22 -0.26 1.20 16 6 O -0.31 -3.68 9.81 -19.42 -0.19 -3.87 16 7 C 0.09 0.93 2.19 -26.61 -0.06 0.88 16 8 C -0.14 -1.50 5.47 -26.65 -0.15 -1.65 16 9 C 0.06 0.70 5.43 -3.83 -0.02 0.68 16 10 N -0.54 -7.61 3.97 -234.67 -0.93 -8.54 16 11 C 0.06 1.02 4.39 -3.82 -0.02 1.01 16 12 C -0.08 -1.58 2.40 -90.62 -0.22 -1.79 16 13 H 0.05 1.13 6.70 -51.93 -0.35 0.78 16 14 C -0.12 -2.37 8.87 37.16 0.33 -2.04 16 15 C 0.03 0.66 4.45 -27.89 -0.12 0.54 16 16 C -0.51 -14.26 8.47 -34.44 -0.29 -14.56 16 17 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 18 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 20 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 24 C 0.06 0.76 5.29 -3.83 -0.02 0.74 16 25 C -0.11 -1.25 5.75 -26.65 -0.15 -1.40 16 26 C -0.15 -1.50 9.99 -39.43 -0.39 -1.90 16 27 C -0.08 -0.68 9.69 -39.61 -0.38 -1.07 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.33 8.09 -51.92 -0.42 -0.09 16 30 H 0.06 0.31 8.08 -51.93 -0.42 -0.11 16 31 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 32 H 0.13 1.19 5.67 -52.49 -0.30 0.89 16 33 H 0.07 0.72 5.97 -51.93 -0.31 0.41 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.68 7.43 -51.93 -0.39 0.30 16 36 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.94 7.93 -51.93 -0.41 0.53 16 38 H 0.07 1.15 7.79 -51.93 -0.40 0.74 16 39 H 0.03 0.54 8.00 -51.93 -0.42 0.13 16 40 H 0.05 1.06 7.10 -51.93 -0.37 0.69 16 41 H 0.04 0.78 7.63 -51.93 -0.40 0.38 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.09 1.28 6.65 -51.93 -0.35 0.93 16 48 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 51 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 LS Contribution 396.20 15.07 5.97 5.97 Total: -1.00 -30.30 396.20 -11.36 -41.66 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -9.10 Total: -2.33 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: -2.82 Total: -23.37 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: -0.19 Total: -34.77 kcal Atomic # 8 Polarization: -3.68 SS G_CDS: -0.19 Total: -3.87 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.30 -11.36 -41.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602446072.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.681 kcal (2) G-P(sol) polarization free energy of solvation -30.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds