Wall clock time and date at job start Tue Mar 31 2020 11:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38267 * 119.94218 * 2 1 4 4 C 1.38147 * 120.05301 * 180.25535 * 3 2 1 5 5 C 1.38732 * 119.94354 * 359.47158 * 4 3 2 6 6 O 1.35899 * 120.05556 * 180.30195 * 5 4 3 7 7 C 1.42904 * 117.00097 * 358.15783 * 6 5 4 8 8 C 1.53125 * 109.52160 * 275.11756 * 7 6 5 9 9 C 1.53042 * 109.27537 * 182.43872 * 8 7 6 10 10 N 1.46845 * 109.52221 * 59.17818 * 9 8 7 11 11 C 1.46899 * 110.99982 * 174.16043 * 10 9 8 12 12 C 1.53005 * 109.47316 * 200.13626 * 11 10 9 13 13 H 1.08998 * 109.46862 * 305.31371 * 12 11 10 14 14 C 1.53004 * 109.46806 * 65.31125 * 12 11 10 15 15 C 1.52998 * 109.47257 * 185.30707 * 12 11 10 16 16 C 1.50697 * 109.47020 * 174.99818 * 15 12 11 17 17 H 1.07996 * 120.00137 * 0.02562 * 16 15 12 18 18 C 1.37883 * 119.99996 * 180.02562 * 16 15 12 19 19 N 1.31518 * 119.99624 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00017 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46879 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46890 * 120.00042 * 20 18 16 23 23 H 1.48496 * 109.47155 * 239.99815 * 20 18 16 24 24 C 1.46846 * 111.20137 * 298.25785 * 10 9 8 25 25 C 1.53036 * 109.52415 * 61.74162 * 24 10 9 26 26 C 1.38733 * 119.88978 * 0.27016 * 5 4 3 27 27 C 1.38149 * 119.94208 * 0.02562 * 26 5 4 28 28 H 1.09003 * 109.47165 * 270.25566 * 1 2 3 29 29 H 1.09007 * 109.47238 * 30.25350 * 1 2 3 30 30 H 1.08995 * 109.47266 * 150.25298 * 1 2 3 31 31 H 1.07995 * 119.97610 * 0.02562 * 3 2 1 32 32 H 1.07996 * 120.02736 * 179.74096 * 4 3 2 33 33 H 1.08997 * 109.51837 * 35.30538 * 7 6 5 34 34 H 1.08997 * 109.49822 * 302.37924 * 8 7 6 35 35 H 1.08998 * 109.50163 * 62.49611 * 8 7 6 36 36 H 1.09003 * 109.46299 * 299.16560 * 9 8 7 37 37 H 1.08995 * 109.45176 * 179.18787 * 9 8 7 38 38 H 1.08996 * 109.47090 * 320.13663 * 11 10 9 39 39 H 1.08998 * 109.47188 * 80.13844 * 11 10 9 40 40 H 1.08997 * 109.46883 * 185.03193 * 14 12 11 41 41 H 1.09004 * 109.47018 * 305.02233 * 14 12 11 42 42 H 1.08998 * 109.47380 * 65.02637 * 14 12 11 43 43 H 1.09002 * 109.47485 * 295.00290 * 15 12 11 44 44 H 1.09006 * 109.46516 * 55.00170 * 15 12 11 45 45 H 0.97002 * 119.99419 * 180.02562 * 19 18 16 46 46 H 1.09007 * 109.46254 * 301.72634 * 24 10 9 47 47 H 1.08995 * 109.45679 * 181.75386 * 24 10 9 48 48 H 1.08997 * 109.50578 * 180.88314 * 25 24 10 49 49 H 1.08997 * 109.53381 * 60.78233 * 25 24 10 50 50 H 1.07992 * 120.02635 * 180.02562 * 26 5 4 51 51 H 1.07994 * 119.97052 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5786 1.2008 -0.0053 5 6 4.2734 0.0000 0.0004 6 8 5.6324 0.0001 0.0014 7 6 6.2812 1.2725 -0.0446 8 6 6.3999 1.7340 -1.4998 9 6 7.1492 3.0676 -1.5474 10 7 8.4836 2.9020 -0.9572 11 6 9.2824 4.1253 -1.1104 12 6 10.7671 3.7868 -0.9614 13 1 10.9292 3.2724 -0.0142 14 6 11.2018 2.8804 -2.1149 15 6 11.5895 5.0767 -0.9887 16 6 13.0370 4.7554 -0.7195 17 1 13.3401 3.7333 -0.5467 18 6 13.9744 5.7662 -0.6938 19 7 13.6051 7.0109 -0.9038 20 14 15.7687 5.3678 -0.3608 21 1 15.9217 3.9045 -0.1592 22 1 16.5940 5.7964 -1.5185 23 1 16.2170 6.0857 0.8594 24 6 8.3946 2.5049 0.4537 25 6 7.6825 1.1545 0.5611 26 6 3.5786 -1.2007 0.0058 27 6 2.1971 -1.1980 0.0049 28 1 -0.3634 0.0046 1.0277 29 1 -0.3634 0.8878 -0.5178 30 1 -0.3633 -0.8922 -0.5099 31 1 1.6558 2.1326 0.0004 32 1 4.1172 2.1369 -0.0096 33 1 5.6991 1.9988 0.5225 34 1 6.9482 0.9877 -2.0746 35 1 5.4037 1.8609 -1.9237 36 1 6.5932 3.8169 -0.9837 37 1 7.2479 3.3917 -2.5833 38 1 9.1047 4.5541 -2.0966 39 1 8.9953 4.8451 -0.3440 40 1 12.2343 2.5669 -1.9613 41 1 10.5568 2.0023 -2.1499 42 1 11.1238 3.4262 -3.0552 43 1 11.4975 5.5457 -1.9684 44 1 11.2203 5.7592 -0.2231 45 1 14.2646 7.7220 -0.8861 46 1 7.8328 3.2568 1.0080 47 1 9.3980 2.4205 0.8711 48 1 7.6028 0.8675 1.6095 49 1 8.2508 0.3987 0.0190 50 1 4.1172 -2.1367 0.0107 51 1 1.6558 -2.1325 0.0087 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602446072.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:19 Heat of formation + Delta-G solvation = -49.544051 kcal Electronic energy + Delta-G solvation = -26268.592350 eV Core-core repulsion = 22745.357334 eV Total energy + Delta-G solvation = -3523.235017 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.48572 -39.97015 -38.55566 -36.76018 -34.56131 -33.21375 -32.33075 -32.03555 -31.71437 -28.88510 -27.59421 -26.90688 -25.35519 -24.38563 -23.99912 -23.16348 -22.03518 -20.80578 -20.50438 -19.20412 -18.51560 -17.43405 -16.75105 -16.42764 -16.23451 -16.16240 -16.00834 -15.63282 -15.41966 -15.03616 -14.72762 -14.61742 -14.41839 -14.36501 -14.09612 -13.89299 -13.75512 -13.38900 -13.24849 -13.02665 -12.83611 -12.76813 -12.55956 -12.48323 -12.38826 -12.25728 -12.22774 -12.17117 -11.94870 -11.82138 -11.49269 -11.33764 -11.19853 -11.01990 -10.86359 -10.52753 -9.94682 -9.23798 -8.95620 -8.16999 -6.25507 0.39613 0.47543 1.39681 1.40483 1.53337 2.17850 2.42217 2.80314 2.91174 3.16542 3.63548 3.68613 3.86358 3.91187 4.01163 4.03522 4.09968 4.21044 4.27428 4.31845 4.39651 4.40931 4.46585 4.53933 4.55772 4.62514 4.75115 4.78871 4.85643 4.86498 4.89037 4.90230 4.94708 4.96770 5.08628 5.10829 5.12051 5.19043 5.26842 5.30643 5.40910 5.43723 5.49857 5.52025 5.57687 5.70668 5.82418 5.90663 5.90902 6.09459 6.21222 6.33622 6.49618 6.90773 7.42639 8.95094 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.039740 B = 0.001997 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.402657 B =14016.434462 C =14292.878412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.135 4.135 3 C -0.088 4.088 4 C -0.216 4.216 5 C 0.107 3.893 6 O -0.322 6.322 7 C 0.088 3.912 8 C -0.128 4.128 9 C 0.059 3.941 10 N -0.540 5.540 11 C 0.073 3.927 12 C -0.069 4.069 13 H 0.052 0.948 14 C -0.112 4.112 15 C 0.032 3.968 16 C -0.526 4.526 17 H 0.059 0.941 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.960 3.040 21 H -0.263 1.263 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.059 3.941 25 C -0.102 4.102 26 C -0.165 4.165 27 C -0.085 4.085 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.140 0.860 32 H 0.133 0.867 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.026 0.974 40 H 0.035 0.965 41 H 0.066 0.934 42 H 0.034 0.966 43 H -0.009 1.009 44 H -0.014 1.014 45 H 0.261 0.739 46 H 0.038 0.962 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.075 0.925 50 H 0.133 0.867 51 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.770 -15.141 1.927 30.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.135 4.135 3 C -0.106 4.106 4 C -0.234 4.234 5 C 0.062 3.938 6 O -0.236 6.236 7 C 0.032 3.968 8 C -0.166 4.166 9 C -0.068 4.068 10 N -0.265 5.265 11 C -0.054 4.054 12 C -0.088 4.088 13 H 0.071 0.929 14 C -0.169 4.169 15 C -0.005 4.005 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.200 4.200 19 N -0.576 5.576 20 Si 0.785 3.215 21 H -0.187 1.187 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.069 4.069 25 C -0.140 4.140 26 C -0.184 4.184 27 C -0.103 4.103 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.158 0.842 32 H 0.151 0.849 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.044 0.956 40 H 0.054 0.946 41 H 0.084 0.916 42 H 0.053 0.947 43 H 0.009 0.991 44 H 0.004 0.996 45 H 0.070 0.930 46 H 0.056 0.944 47 H 0.096 0.904 48 H 0.102 0.898 49 H 0.094 0.906 50 H 0.151 0.849 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -26.341 -15.514 1.665 30.615 hybrid contribution 0.953 1.294 0.534 1.693 sum -25.388 -14.220 2.199 29.182 Atomic orbital electron populations 1.20758 0.89294 1.03517 1.02843 1.20193 0.97641 0.92835 1.02859 1.21126 0.93048 0.98811 0.97641 1.21434 0.95936 0.97272 1.08775 1.19291 0.82513 0.94913 0.97038 1.86104 1.16591 1.32634 1.88297 1.22540 0.93555 0.83618 0.97045 1.22023 1.00813 0.97519 0.96208 1.22067 0.88228 0.96057 1.00486 1.61888 1.14411 1.33562 1.16596 1.22022 0.93278 0.89701 1.00434 1.20986 0.92795 0.96487 0.98571 0.92948 1.21464 0.99781 0.98864 0.96807 1.19032 0.94132 0.92861 0.94519 1.21666 0.94055 0.93585 1.47119 0.92252 1.25941 1.03710 0.94951 0.95409 1.70107 1.35518 1.00422 1.51540 0.85472 0.79626 0.78694 0.77716 1.18673 1.20572 1.20564 1.22065 1.00783 0.95518 0.88537 1.21550 0.93014 0.97695 1.01761 1.20673 0.94584 0.96347 1.06803 1.21145 0.92564 0.98917 0.97625 0.90723 0.91022 0.90672 0.84233 0.84914 0.90479 0.90878 0.90244 0.94329 0.89850 0.91277 0.95616 0.94621 0.91558 0.94684 0.99102 0.99551 0.92998 0.94414 0.90400 0.89767 0.90648 0.84863 0.83322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 71.24 0.71 -0.24 16 2 C -0.14 -1.96 5.88 -19.85 -0.12 -2.07 16 3 C -0.09 -1.40 9.69 22.26 0.22 -1.18 16 4 C -0.22 -4.03 8.42 22.37 0.19 -3.84 16 5 C 0.11 2.28 6.59 22.51 0.15 2.43 16 6 O -0.32 -7.47 9.81 -92.41 -0.91 -8.38 16 7 C 0.09 1.84 2.19 30.68 0.07 1.90 16 8 C -0.13 -2.62 5.47 30.65 0.17 -2.45 16 9 C 0.06 1.34 5.43 86.33 0.47 1.81 16 10 N -0.54 -14.88 3.97 -896.36 -3.56 -18.44 16 11 C 0.07 2.46 4.39 86.31 0.38 2.84 16 12 C -0.07 -2.83 2.40 -10.79 -0.03 -2.86 16 13 H 0.05 2.17 6.70 -2.39 -0.02 2.15 16 14 C -0.11 -4.30 8.87 71.98 0.64 -3.67 16 15 C 0.03 1.69 4.45 29.85 0.13 1.82 16 16 C -0.53 -29.88 8.47 25.60 0.22 -29.67 16 17 H 0.06 3.27 7.06 -2.91 -0.02 3.25 16 18 C 0.00 -0.18 5.46 84.66 0.46 0.29 16 19 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 20 Si 0.96 44.81 29.54 68.60 2.03 46.83 16 21 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 C 0.06 1.49 5.29 86.33 0.46 1.94 16 25 C -0.10 -2.24 5.75 30.65 0.18 -2.07 16 26 C -0.17 -3.10 9.99 22.37 0.22 -2.88 16 27 C -0.08 -1.27 9.69 22.25 0.22 -1.05 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.54 8.09 -2.38 -0.02 0.52 16 30 H 0.07 0.51 8.08 -2.39 -0.02 0.49 16 31 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 32 H 0.13 2.27 5.67 -2.91 -0.02 2.25 16 33 H 0.08 1.49 5.97 -2.39 -0.01 1.47 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 1.47 7.43 -2.39 -0.02 1.45 16 36 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.08 1.84 7.93 -2.39 -0.02 1.82 16 38 H 0.07 2.30 7.79 -2.39 -0.02 2.28 16 39 H 0.03 0.89 8.00 -2.39 -0.02 0.87 16 40 H 0.03 1.45 7.10 -2.39 -0.02 1.44 16 41 H 0.07 2.25 7.63 -2.38 -0.02 2.23 16 42 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 43 H -0.01 -0.54 8.14 -2.39 -0.02 -0.55 16 44 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 45 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 46 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 47 H 0.08 2.17 6.65 -2.39 -0.02 2.15 16 48 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 50 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 51 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -65.32 396.20 3.45 -61.87 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.87 Total: 14.03 kcal Atomic # 6 Polarization: -43.67 SS G_CDS: 4.73 Total: -38.95 kcal Atomic # 7 Polarization: -72.14 SS G_CDS: -3.27 Total: -75.41 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -0.91 Total: -8.38 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -65.32 3.45 -61.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602446072.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.323 kcal (2) G-P(sol) polarization free energy of solvation -65.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds