Wall clock time and date at job start Tue Mar 31 2020 11:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38269 * 119.94376 * 2 1 4 4 C 1.38148 * 120.05405 * 180.02562 * 3 2 1 5 5 C 1.38727 * 119.94563 * 359.97438 * 4 3 2 6 6 O 1.35904 * 120.05713 * 180.02562 * 5 4 3 7 7 C 1.42898 * 116.99638 * 1.25914 * 6 5 4 8 8 C 1.53127 * 109.52144 * 200.79901 * 7 6 5 9 9 C 1.53032 * 109.27680 * 182.44011 * 8 7 6 10 10 N 1.46843 * 109.52623 * 59.18154 * 9 8 7 11 11 C 1.46897 * 111.00542 * 174.15954 * 10 9 8 12 12 C 1.52994 * 109.47546 * 176.62833 * 11 10 9 13 13 H 1.09005 * 109.47139 * 301.66169 * 12 11 10 14 14 C 1.52997 * 109.47238 * 181.66576 * 12 11 10 15 15 C 1.53000 * 109.47015 * 61.66292 * 12 11 10 16 16 C 1.50708 * 109.46893 * 184.99823 * 15 12 11 17 17 H 1.08000 * 120.00141 * 0.02562 * 16 15 12 18 18 C 1.37877 * 120.00215 * 179.97438 * 16 15 12 19 19 N 1.31510 * 120.00556 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 119.99531 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47325 * 90.00021 * 20 18 16 22 22 H 1.48501 * 109.46710 * 209.99833 * 20 18 16 23 23 H 1.48501 * 109.47219 * 329.99351 * 20 18 16 24 24 C 1.46852 * 111.19661 * 298.25500 * 10 9 8 25 25 C 1.53034 * 109.52384 * 61.74246 * 24 10 9 26 26 C 1.38736 * 119.88722 * 0.28098 * 5 4 3 27 27 C 1.38140 * 119.94327 * 359.42771 * 26 5 4 28 28 H 1.09002 * 109.47046 * 89.99555 * 1 2 3 29 29 H 1.08995 * 109.47219 * 209.99961 * 1 2 3 30 30 H 1.09004 * 109.47282 * 330.00527 * 1 2 3 31 31 H 1.08002 * 119.97283 * 359.97438 * 3 2 1 32 32 H 1.08005 * 120.02490 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.52661 * 320.92485 * 7 6 5 34 34 H 1.08996 * 109.50107 * 62.49871 * 8 7 6 35 35 H 1.08999 * 109.49656 * 302.38245 * 8 7 6 36 36 H 1.08994 * 109.46372 * 299.16198 * 9 8 7 37 37 H 1.09001 * 109.45034 * 179.18957 * 9 8 7 38 38 H 1.09006 * 109.46626 * 296.62618 * 11 10 9 39 39 H 1.09000 * 109.47200 * 56.62301 * 11 10 9 40 40 H 1.08997 * 109.47645 * 64.49561 * 14 12 11 41 41 H 1.09004 * 109.47434 * 184.50184 * 14 12 11 42 42 H 1.09003 * 109.47240 * 304.49397 * 14 12 11 43 43 H 1.08997 * 109.47471 * 304.99899 * 15 12 11 44 44 H 1.09000 * 109.47487 * 65.00544 * 15 12 11 45 45 H 0.96995 * 120.00818 * 180.02562 * 19 18 16 46 46 H 1.09000 * 109.46278 * 181.75939 * 24 10 9 47 47 H 1.08998 * 109.45974 * 301.72586 * 24 10 9 48 48 H 1.08997 * 109.50422 * 180.88295 * 25 24 10 49 49 H 1.09004 * 109.53702 * 60.78049 * 25 24 10 50 50 H 1.07997 * 120.02706 * 179.71805 * 26 5 4 51 51 H 1.07997 * 119.97589 * 180.27564 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 -0.0005 5 6 4.2734 0.0001 -0.0005 6 8 5.6325 0.0000 -0.0005 7 6 6.2812 1.2730 0.0274 8 6 7.7156 1.1277 -0.4884 9 6 8.4241 2.4812 -0.3989 10 7 8.4306 2.9406 0.9958 11 6 9.2227 4.1691 1.1418 12 6 9.1371 4.6623 2.5876 13 1 8.0941 4.8403 2.8496 14 6 9.9279 5.9643 2.7299 15 6 9.7246 3.6038 3.5231 16 6 9.5296 4.0343 4.9542 17 1 9.0357 4.9692 5.1743 18 6 9.9808 3.2343 5.9824 19 7 9.8102 3.6097 7.2312 20 14 10.8345 1.6169 5.6016 21 1 12.2957 1.8471 5.4714 22 1 10.5815 0.6526 6.7023 23 1 10.3047 1.0652 4.3287 24 6 7.0641 3.1327 1.4979 25 6 6.3149 1.7987 1.4652 26 6 3.5786 -1.2007 -0.0059 27 6 2.1972 -1.1981 0.0007 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3634 0.8901 0.5138 31 1 1.6558 2.1327 -0.0004 32 1 4.1173 2.1369 -0.0010 33 1 5.7359 1.9737 -0.6049 34 1 7.6972 0.7944 -1.5259 35 1 8.2487 0.3970 0.1198 36 1 7.8984 3.2079 -1.0182 37 1 9.4502 2.3778 -0.7520 38 1 10.2628 3.9629 0.8893 39 1 8.8313 4.9354 0.4727 40 1 9.4614 6.7410 2.1241 41 1 9.9340 6.2733 3.7752 42 1 10.9521 5.8061 2.3920 43 1 9.2194 2.6522 3.3580 44 1 10.7894 3.4899 3.3200 45 1 10.1280 3.0471 7.9546 46 1 7.1023 3.5027 2.5225 47 1 6.5448 3.8564 0.8697 48 1 5.2958 1.9448 1.8232 49 1 6.8254 1.0781 2.1042 50 1 4.1172 -2.1368 -0.0105 51 1 1.6558 -2.1325 0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602446073.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:23 Heat of formation + Delta-G solvation = -27.442688 kcal Electronic energy + Delta-G solvation = -26956.281667 eV Core-core repulsion = 23434.005037 eV Total energy + Delta-G solvation = -3522.276630 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.60167 -39.01726 -37.63580 -35.27042 -32.73185 -32.06099 -31.47841 -30.93927 -30.76543 -27.68049 -26.72876 -25.65831 -23.87986 -23.08452 -22.72848 -21.92192 -21.21015 -19.88963 -18.72716 -18.31231 -16.73613 -16.53091 -15.72084 -15.40225 -15.31838 -14.80879 -14.64226 -14.54939 -14.10864 -13.91742 -13.79172 -13.64487 -13.54485 -13.07852 -12.92775 -12.53506 -12.45440 -12.31296 -12.08290 -11.95969 -11.71598 -11.63810 -11.52083 -11.28742 -11.17534 -10.98418 -10.88210 -10.69888 -10.53610 -10.51167 -10.17911 -9.65646 -9.60737 -9.38923 -9.16369 -8.94268 -8.43949 -8.14243 -8.00617 -5.95351 -3.91425 1.17574 1.27084 3.08000 3.38968 3.46628 3.55048 3.58669 4.07653 4.55545 4.56327 4.64255 4.68588 4.73193 4.77959 4.94609 5.06021 5.14965 5.17844 5.22362 5.30681 5.36614 5.39988 5.46099 5.49239 5.54790 5.55477 5.64718 5.68505 5.73672 5.80711 5.88066 5.90507 5.95842 6.07267 6.12718 6.14230 6.18428 6.24148 6.32593 6.36050 6.42671 6.43727 6.65601 6.80042 6.95777 7.10779 7.33099 7.36733 7.37548 7.51023 7.65524 7.92447 8.63656 9.10120 9.69020 11.18136 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014037 B = 0.003021 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.209683 B = 9265.835505 C = 9883.212519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.132 4.132 3 C -0.080 4.080 4 C -0.206 4.206 5 C 0.133 3.867 6 O -0.309 6.309 7 C 0.087 3.913 8 C -0.109 4.109 9 C 0.060 3.940 10 N -0.531 5.531 11 C 0.062 3.938 12 C -0.081 4.081 13 H 0.063 0.937 14 C -0.136 4.136 15 C -0.003 4.003 16 C -0.514 4.514 17 H 0.070 0.930 18 C 0.065 3.935 19 N -0.909 5.909 20 Si 0.875 3.125 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.260 1.260 24 C 0.054 3.946 25 C -0.142 4.142 26 C -0.153 4.153 27 C -0.082 4.082 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.122 0.878 32 H 0.130 0.870 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.029 0.971 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.021 0.979 40 H 0.031 0.969 41 H 0.071 0.929 42 H 0.044 0.956 43 H 0.032 0.968 44 H 0.006 0.994 45 H 0.261 0.739 46 H 0.102 0.898 47 H 0.026 0.974 48 H 0.071 0.929 49 H 0.086 0.914 50 H 0.129 0.871 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.910 -5.711 -19.561 24.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.133 4.133 3 C -0.098 4.098 4 C -0.225 4.225 5 C 0.088 3.912 6 O -0.223 6.223 7 C 0.031 3.969 8 C -0.147 4.147 9 C -0.068 4.068 10 N -0.255 5.255 11 C -0.065 4.065 12 C -0.100 4.100 13 H 0.082 0.918 14 C -0.193 4.193 15 C -0.040 4.040 16 C -0.552 4.552 17 H 0.088 0.912 18 C -0.135 4.135 19 N -0.548 5.548 20 Si 0.703 3.297 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.184 1.184 24 C -0.073 4.073 25 C -0.180 4.180 26 C -0.172 4.172 27 C -0.100 4.100 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.140 0.860 32 H 0.147 0.853 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.047 0.953 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.039 0.961 40 H 0.050 0.950 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.050 0.950 44 H 0.025 0.975 45 H 0.070 0.930 46 H 0.120 0.880 47 H 0.044 0.956 48 H 0.089 0.911 49 H 0.105 0.895 50 H 0.147 0.853 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.510 -6.286 -19.107 24.231 hybrid contribution 0.131 0.010 -0.463 0.481 sum -13.379 -6.276 -19.570 24.523 Atomic orbital electron populations 1.20702 0.91220 1.02599 1.01949 1.19806 0.96132 0.93091 1.04245 1.20832 0.93307 0.97655 0.97968 1.21327 0.95295 0.97464 1.08408 1.19035 0.82787 0.94018 0.95379 1.86124 1.15880 1.32383 1.87872 1.22581 0.93516 0.83237 0.97548 1.21610 0.92824 0.98778 1.01476 1.22002 1.00510 0.94673 0.89604 1.61894 1.12816 1.32754 1.18074 1.22277 0.97434 0.88625 0.98153 1.21171 0.99996 0.96409 0.92407 0.91828 1.21725 0.98965 0.96110 1.02536 1.19548 0.95313 0.94866 0.94276 1.21218 1.37858 1.07052 0.89051 0.91216 1.25000 0.95716 0.97822 0.94957 1.69916 1.47864 1.38348 0.98714 0.86835 0.80114 0.84344 0.78437 1.20630 1.21751 1.18426 1.22150 0.87762 0.94997 1.02431 1.22184 1.01011 0.98665 0.96108 1.20437 0.93764 0.96381 1.06581 1.20819 0.92991 0.97687 0.98473 0.91614 0.91754 0.91760 0.85962 0.85254 0.91501 0.90964 0.89663 0.95252 0.90059 0.91081 0.96066 0.95028 0.91005 0.93727 0.95015 0.97533 0.92969 0.88010 0.95573 0.91084 0.89504 0.85294 0.85600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.01 36.00 0.36 -0.39 16 2 C -0.13 -1.27 5.88 -104.60 -0.62 -1.89 16 3 C -0.08 -0.81 9.69 -39.60 -0.38 -1.19 16 4 C -0.21 -2.36 8.19 -39.43 -0.32 -2.68 16 5 C 0.13 1.68 6.54 -39.22 -0.26 1.42 16 6 O -0.31 -4.17 9.83 -19.44 -0.19 -4.36 16 7 C 0.09 1.08 2.20 -26.60 -0.06 1.02 16 8 C -0.11 -1.29 5.75 -26.65 -0.15 -1.45 16 9 C 0.06 0.74 5.46 -3.84 -0.02 0.72 16 10 N -0.53 -8.15 3.98 -234.68 -0.93 -9.08 16 11 C 0.06 0.98 4.54 -3.83 -0.02 0.97 16 12 C -0.08 -1.55 1.85 -90.62 -0.17 -1.71 16 13 H 0.06 1.24 6.09 -51.93 -0.32 0.92 16 14 C -0.14 -2.45 9.07 37.16 0.34 -2.11 16 15 C 0.00 -0.06 3.37 -27.88 -0.09 -0.16 16 16 C -0.51 -14.42 8.90 -34.44 -0.31 -14.72 16 17 H 0.07 2.09 7.32 -52.49 -0.38 1.71 16 18 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 19 N -0.91 -28.30 13.96 55.43 0.77 -27.52 16 20 Si 0.88 22.28 27.47 -169.99 -4.67 17.61 16 21 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 24 C 0.05 0.80 5.01 -3.83 -0.02 0.78 16 25 C -0.14 -1.98 5.35 -26.65 -0.14 -2.12 16 26 C -0.15 -1.73 9.99 -39.43 -0.39 -2.12 16 27 C -0.08 -0.80 9.69 -39.61 -0.38 -1.18 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 30 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 31 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.13 1.38 5.51 -52.48 -0.29 1.09 16 33 H 0.07 0.76 6.24 -51.93 -0.32 0.43 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 1.47 6.83 -51.93 -0.35 1.12 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.03 0.77 6.52 -51.93 -0.34 0.43 16 44 H 0.01 0.15 7.57 -51.93 -0.39 -0.24 16 45 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 46 H 0.10 1.75 5.75 -51.93 -0.30 1.45 16 47 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.07 0.94 6.94 -51.93 -0.36 0.58 16 49 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 50 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 51 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 389.93 15.07 5.88 5.88 Total: -1.00 -31.30 389.93 -10.87 -42.17 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -8.98 Total: 0.31 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: -2.74 Total: -25.00 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: -0.16 Total: -36.61 kcal Atomic # 8 Polarization: -4.17 SS G_CDS: -0.19 Total: -4.36 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.30 -10.87 -42.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602446073.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.725 kcal (2) G-P(sol) polarization free energy of solvation -31.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds