Wall clock time and date at job start Tue Mar 31 2020 11:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38269 * 119.94376 * 2 1 4 4 C 1.38148 * 120.05405 * 180.02562 * 3 2 1 5 5 C 1.38727 * 119.94563 * 359.97438 * 4 3 2 6 6 O 1.35904 * 120.05713 * 180.02562 * 5 4 3 7 7 C 1.42898 * 116.99638 * 1.25914 * 6 5 4 8 8 C 1.53127 * 109.52144 * 200.79901 * 7 6 5 9 9 C 1.53032 * 109.27680 * 182.44011 * 8 7 6 10 10 N 1.46843 * 109.52623 * 59.18154 * 9 8 7 11 11 C 1.46897 * 111.00542 * 174.15954 * 10 9 8 12 12 C 1.52994 * 109.47546 * 176.62833 * 11 10 9 13 13 H 1.09005 * 109.47139 * 301.66169 * 12 11 10 14 14 C 1.52997 * 109.47238 * 181.66576 * 12 11 10 15 15 C 1.53000 * 109.47015 * 61.66292 * 12 11 10 16 16 C 1.50708 * 109.46893 * 184.99823 * 15 12 11 17 17 H 1.08000 * 120.00141 * 0.02562 * 16 15 12 18 18 C 1.37877 * 120.00215 * 179.97438 * 16 15 12 19 19 N 1.31510 * 120.00556 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 119.99531 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47325 * 90.00021 * 20 18 16 22 22 H 1.48501 * 109.46710 * 209.99833 * 20 18 16 23 23 H 1.48501 * 109.47219 * 329.99351 * 20 18 16 24 24 C 1.46852 * 111.19661 * 298.25500 * 10 9 8 25 25 C 1.53034 * 109.52384 * 61.74246 * 24 10 9 26 26 C 1.38736 * 119.88722 * 0.28098 * 5 4 3 27 27 C 1.38140 * 119.94327 * 359.42771 * 26 5 4 28 28 H 1.09002 * 109.47046 * 89.99555 * 1 2 3 29 29 H 1.08995 * 109.47219 * 209.99961 * 1 2 3 30 30 H 1.09004 * 109.47282 * 330.00527 * 1 2 3 31 31 H 1.08002 * 119.97283 * 359.97438 * 3 2 1 32 32 H 1.08005 * 120.02490 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.52661 * 320.92485 * 7 6 5 34 34 H 1.08996 * 109.50107 * 62.49871 * 8 7 6 35 35 H 1.08999 * 109.49656 * 302.38245 * 8 7 6 36 36 H 1.08994 * 109.46372 * 299.16198 * 9 8 7 37 37 H 1.09001 * 109.45034 * 179.18957 * 9 8 7 38 38 H 1.09006 * 109.46626 * 296.62618 * 11 10 9 39 39 H 1.09000 * 109.47200 * 56.62301 * 11 10 9 40 40 H 1.08997 * 109.47645 * 64.49561 * 14 12 11 41 41 H 1.09004 * 109.47434 * 184.50184 * 14 12 11 42 42 H 1.09003 * 109.47240 * 304.49397 * 14 12 11 43 43 H 1.08997 * 109.47471 * 304.99899 * 15 12 11 44 44 H 1.09000 * 109.47487 * 65.00544 * 15 12 11 45 45 H 0.96995 * 120.00818 * 180.02562 * 19 18 16 46 46 H 1.09000 * 109.46278 * 181.75939 * 24 10 9 47 47 H 1.08998 * 109.45974 * 301.72586 * 24 10 9 48 48 H 1.08997 * 109.50422 * 180.88295 * 25 24 10 49 49 H 1.09004 * 109.53702 * 60.78049 * 25 24 10 50 50 H 1.07997 * 120.02706 * 179.71805 * 26 5 4 51 51 H 1.07997 * 119.97589 * 180.27564 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 -0.0005 5 6 4.2734 0.0001 -0.0005 6 8 5.6325 0.0000 -0.0005 7 6 6.2812 1.2730 0.0274 8 6 7.7156 1.1277 -0.4884 9 6 8.4241 2.4812 -0.3989 10 7 8.4306 2.9406 0.9958 11 6 9.2227 4.1691 1.1418 12 6 9.1371 4.6623 2.5876 13 1 8.0941 4.8403 2.8496 14 6 9.9279 5.9643 2.7299 15 6 9.7246 3.6038 3.5231 16 6 9.5296 4.0343 4.9542 17 1 9.0357 4.9692 5.1743 18 6 9.9808 3.2343 5.9824 19 7 9.8102 3.6097 7.2312 20 14 10.8345 1.6169 5.6016 21 1 12.2957 1.8471 5.4714 22 1 10.5815 0.6526 6.7023 23 1 10.3047 1.0652 4.3287 24 6 7.0641 3.1327 1.4979 25 6 6.3149 1.7987 1.4652 26 6 3.5786 -1.2007 -0.0059 27 6 2.1972 -1.1981 0.0007 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3634 0.8901 0.5138 31 1 1.6558 2.1327 -0.0004 32 1 4.1173 2.1369 -0.0010 33 1 5.7359 1.9737 -0.6049 34 1 7.6972 0.7944 -1.5259 35 1 8.2487 0.3970 0.1198 36 1 7.8984 3.2079 -1.0182 37 1 9.4502 2.3778 -0.7520 38 1 10.2628 3.9629 0.8893 39 1 8.8313 4.9354 0.4727 40 1 9.4614 6.7410 2.1241 41 1 9.9340 6.2733 3.7752 42 1 10.9521 5.8061 2.3920 43 1 9.2194 2.6522 3.3580 44 1 10.7894 3.4899 3.3200 45 1 10.1280 3.0471 7.9546 46 1 7.1023 3.5027 2.5225 47 1 6.5448 3.8564 0.8697 48 1 5.2958 1.9448 1.8232 49 1 6.8254 1.0781 2.1042 50 1 4.1172 -2.1368 -0.0105 51 1 1.6558 -2.1325 0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602446073.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:22 Heat of formation + Delta-G solvation = -44.116968 kcal Electronic energy + Delta-G solvation = -26957.004718 eV Core-core repulsion = 23434.005037 eV Total energy + Delta-G solvation = -3522.999681 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.51570 -40.04112 -38.61754 -36.71642 -34.51813 -33.25191 -32.47446 -31.92230 -31.74436 -29.59636 -27.58644 -26.73196 -25.17819 -24.13700 -24.01148 -23.22902 -22.06102 -20.92799 -20.24567 -19.20590 -18.90001 -17.53760 -16.65466 -16.59954 -16.23019 -16.20909 -15.89798 -15.46876 -15.36158 -15.17297 -14.91369 -14.61255 -14.46427 -14.42668 -14.16765 -13.85077 -13.65299 -13.56869 -13.24564 -13.12723 -12.87519 -12.79554 -12.65204 -12.47206 -12.44963 -12.28024 -12.18782 -12.06423 -11.72926 -11.68789 -11.49896 -11.46274 -11.19144 -11.10432 -10.81820 -10.69879 -9.95861 -9.13310 -8.96883 -8.23977 -6.23694 0.38262 0.46173 1.34613 1.37883 1.51581 2.18433 2.39610 2.78970 2.97033 3.12983 3.63716 3.69015 3.86979 3.89784 3.99613 4.02751 4.08505 4.18873 4.24456 4.32369 4.36248 4.40067 4.45188 4.49878 4.53714 4.60466 4.74723 4.78206 4.81068 4.84087 4.85741 4.88626 4.93252 4.94067 5.06687 5.09160 5.11634 5.15139 5.18483 5.26222 5.37526 5.39603 5.42714 5.50610 5.63960 5.68989 5.74219 5.79419 5.89891 6.18363 6.28950 6.38368 6.48337 6.84482 7.39877 8.92841 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014037 B = 0.003021 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.209683 B = 9265.835505 C = 9883.212519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.135 4.135 3 C -0.089 4.089 4 C -0.215 4.215 5 C 0.106 3.894 6 O -0.325 6.325 7 C 0.092 3.908 8 C -0.105 4.105 9 C 0.063 3.937 10 N -0.554 5.554 11 C 0.073 3.927 12 C -0.079 4.079 13 H 0.054 0.946 14 C -0.131 4.131 15 C 0.006 3.994 16 C -0.512 4.512 17 H 0.035 0.965 18 C 0.004 3.996 19 N -0.956 5.956 20 Si 0.941 3.059 21 H -0.269 1.269 22 H -0.290 1.290 23 H -0.250 1.250 24 C 0.060 3.940 25 C -0.135 4.135 26 C -0.167 4.167 27 C -0.085 4.085 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.141 0.859 32 H 0.133 0.867 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.062 0.938 41 H 0.035 0.965 42 H 0.054 0.946 43 H 0.024 0.976 44 H 0.006 0.994 45 H 0.262 0.738 46 H 0.069 0.931 47 H 0.046 0.954 48 H 0.072 0.928 49 H 0.056 0.944 50 H 0.133 0.867 51 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.657 -6.318 -22.556 27.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.135 4.135 3 C -0.107 4.107 4 C -0.234 4.234 5 C 0.061 3.939 6 O -0.239 6.239 7 C 0.037 3.963 8 C -0.143 4.143 9 C -0.064 4.064 10 N -0.280 5.280 11 C -0.055 4.055 12 C -0.098 4.098 13 H 0.072 0.928 14 C -0.189 4.189 15 C -0.031 4.031 16 C -0.550 4.550 17 H 0.053 0.947 18 C -0.192 4.192 19 N -0.598 5.598 20 Si 0.766 3.234 21 H -0.195 1.195 22 H -0.216 1.216 23 H -0.174 1.174 24 C -0.068 4.068 25 C -0.173 4.173 26 C -0.186 4.186 27 C -0.103 4.103 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.159 0.841 32 H 0.151 0.849 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.042 0.958 44 H 0.024 0.976 45 H 0.071 0.929 46 H 0.088 0.912 47 H 0.064 0.936 48 H 0.090 0.910 49 H 0.075 0.925 50 H 0.151 0.849 51 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -14.262 -6.888 -22.125 27.209 hybrid contribution 0.241 0.246 0.500 0.607 sum -14.021 -6.642 -21.625 26.614 Atomic orbital electron populations 1.20756 0.89174 1.03469 1.02951 1.20206 0.97717 0.92794 1.02816 1.21144 0.93026 0.98883 0.97645 1.21449 0.96000 0.97240 1.08669 1.19304 0.82533 0.94975 0.97045 1.86097 1.16656 1.32821 1.88322 1.22537 0.94126 0.83375 0.96302 1.21599 0.92054 0.98326 1.02331 1.22064 1.01607 0.94897 0.87882 1.61841 1.12871 1.32747 1.20497 1.22098 0.98186 0.89543 0.95639 1.21074 0.99137 0.95561 0.93991 0.92808 1.21650 0.99851 0.96490 1.00882 1.19421 0.95311 0.95934 0.92471 1.21569 1.36278 1.05506 0.91675 0.94719 1.25891 0.96884 1.01685 0.94746 1.70064 1.49793 1.40072 0.99862 0.85785 0.79338 0.79822 0.78489 1.19463 1.21595 1.17360 1.22003 0.88197 0.95589 1.00995 1.22082 1.00481 0.97670 0.97117 1.20682 0.94667 0.96325 1.06901 1.21149 0.92511 0.98974 0.97656 0.90434 0.90745 0.91101 0.84125 0.84916 0.89944 0.88774 0.91569 0.93321 0.88847 0.90437 0.93519 0.91857 0.94580 0.92697 0.95814 0.97589 0.92902 0.91234 0.93569 0.90984 0.92502 0.84919 0.83235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.01 71.24 0.71 -0.49 16 2 C -0.14 -2.34 5.88 -19.85 -0.12 -2.45 16 3 C -0.09 -1.67 9.69 22.26 0.22 -1.46 16 4 C -0.22 -4.72 8.19 22.37 0.18 -4.54 16 5 C 0.11 2.63 6.54 22.51 0.15 2.78 16 6 O -0.32 -8.66 9.83 -92.47 -0.91 -9.57 16 7 C 0.09 2.19 2.20 30.68 0.07 2.26 16 8 C -0.11 -2.30 5.75 30.65 0.18 -2.13 16 9 C 0.06 1.36 5.46 86.32 0.47 1.83 16 10 N -0.55 -16.04 3.98 -896.39 -3.57 -19.62 16 11 C 0.07 2.11 4.54 86.30 0.39 2.50 16 12 C -0.08 -2.96 1.85 -10.80 -0.02 -2.98 16 13 H 0.05 2.12 6.09 -2.38 -0.01 2.10 16 14 C -0.13 -4.61 9.07 71.98 0.65 -3.96 16 15 C 0.01 0.29 3.37 29.85 0.10 0.39 16 16 C -0.51 -29.70 8.90 25.60 0.23 -29.47 16 17 H 0.03 2.20 7.32 -2.91 -0.02 2.18 16 18 C 0.00 0.22 5.47 84.66 0.46 0.68 16 19 N -0.96 -61.51 13.96 21.45 0.30 -61.21 16 20 Si 0.94 46.65 27.47 68.60 1.88 48.53 16 21 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 23 H -0.25 -11.87 6.54 99.48 0.65 -11.22 16 24 C 0.06 1.74 5.01 86.32 0.43 2.17 16 25 C -0.14 -3.79 5.35 30.65 0.16 -3.63 16 26 C -0.17 -3.68 9.99 22.37 0.22 -3.46 16 27 C -0.09 -1.53 9.69 22.25 0.22 -1.31 16 28 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.70 8.08 -2.39 -0.02 0.68 16 30 H 0.07 0.71 8.08 -2.38 -0.02 0.70 16 31 H 0.14 2.02 8.06 -2.91 -0.02 1.99 16 32 H 0.13 2.69 5.51 -2.91 -0.02 2.67 16 33 H 0.08 1.70 6.24 -2.39 -0.01 1.68 16 34 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.09 1.81 8.12 -2.39 -0.02 1.79 16 38 H 0.08 2.17 8.14 -2.38 -0.02 2.16 16 39 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.04 1.50 6.83 -2.38 -0.02 1.48 16 42 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.02 1.16 6.52 -2.39 -0.02 1.14 16 44 H 0.01 0.27 7.57 -2.39 -0.02 0.26 16 45 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 46 H 0.07 2.45 5.75 -2.39 -0.01 2.44 16 47 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.07 1.94 6.94 -2.39 -0.02 1.93 16 49 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 50 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 51 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -69.86 389.93 3.24 -66.62 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.82 Total: 18.52 kcal Atomic # 6 Polarization: -47.98 SS G_CDS: 4.71 Total: -43.27 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -3.27 Total: -80.83 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -0.91 Total: -9.57 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.88 Total: 48.53 kcal Total: -69.86 3.24 -66.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602446073.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.506 kcal (2) G-P(sol) polarization free energy of solvation -69.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds