Wall clock time and date at job start Tue Mar 31 2020 11:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38264 * 120.00017 * 2 1 4 4 C 1.38207 * 120.00213 * 180.25571 * 3 2 1 5 5 C 1.38258 * 119.99846 * 359.79057 * 4 3 2 6 6 C 1.38210 * 120.00216 * 359.95866 * 5 4 3 7 7 C 1.38211 * 120.00380 * 179.77054 * 2 1 3 8 8 C 1.50697 * 119.99899 * 359.97438 * 7 2 1 9 9 H 1.09001 * 109.50818 * 34.64268 * 8 7 2 10 10 C 1.53094 * 109.50520 * 274.50859 * 8 7 2 11 11 N 1.47019 * 109.25605 * 183.21945 * 10 8 7 12 12 C 1.46899 * 110.99757 * 182.39305 * 11 10 8 13 13 C 1.53001 * 109.47322 * 270.15250 * 12 11 10 14 14 H 1.08999 * 109.46951 * 317.22474 * 13 12 11 15 15 C 1.52999 * 109.47526 * 197.22224 * 13 12 11 16 16 C 1.53001 * 109.47204 * 77.21914 * 13 12 11 17 17 C 1.50697 * 109.47379 * 182.05964 * 16 13 12 18 18 H 1.08000 * 119.99913 * 0.02562 * 17 16 13 19 19 C 1.37871 * 120.00188 * 179.97438 * 17 16 13 20 20 N 1.31517 * 120.00118 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00203 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47012 * 60.00287 * 21 19 17 23 23 H 1.48502 * 109.47453 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47117 * 300.00449 * 21 19 17 25 25 C 1.47012 * 110.75437 * 58.61605 * 11 10 8 26 26 H 1.08996 * 109.50989 * 61.31897 * 25 11 10 27 27 C 1.53005 * 109.50554 * 181.40825 * 25 11 10 28 28 C 1.53096 * 109.25852 * 301.38209 * 25 11 10 29 29 O 1.43015 * 109.25657 * 56.84772 * 28 25 11 30 30 H 1.09001 * 109.47287 * 270.22634 * 1 2 3 31 31 H 1.09001 * 109.47435 * 30.23156 * 1 2 3 32 32 H 1.08998 * 109.46810 * 150.23114 * 1 2 3 33 33 H 1.08000 * 119.99688 * 0.02562 * 3 2 1 34 34 H 1.08004 * 119.99616 * 179.77246 * 4 3 2 35 35 H 1.08004 * 119.99575 * 179.97438 * 5 4 3 36 36 H 1.07998 * 119.99726 * 180.02562 * 6 5 4 37 37 H 1.09001 * 109.50483 * 303.14789 * 10 8 7 38 38 H 1.09000 * 109.50873 * 63.24130 * 10 8 7 39 39 H 1.08997 * 109.47358 * 30.15195 * 12 11 10 40 40 H 1.09003 * 109.47381 * 150.15291 * 12 11 10 41 41 H 1.09001 * 109.47074 * 303.71459 * 15 13 12 42 42 H 1.09003 * 109.46803 * 63.71162 * 15 13 12 43 43 H 1.08999 * 109.47261 * 183.71391 * 15 13 12 44 44 H 1.09006 * 109.47159 * 302.06277 * 16 13 12 45 45 H 1.09002 * 109.46985 * 62.05926 * 16 13 12 46 46 H 0.96998 * 120.00028 * 180.02562 * 20 19 17 47 47 H 1.08998 * 109.47201 * 59.99854 * 27 25 11 48 48 H 1.08992 * 109.47122 * 180.02562 * 27 25 11 49 49 H 1.09004 * 109.46631 * 299.99742 * 27 25 11 50 50 H 1.09004 * 109.50776 * 296.91785 * 28 25 11 51 51 H 1.08999 * 109.50901 * 176.78319 * 28 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1974 -0.0053 5 6 4.2717 0.0001 -0.0063 6 6 3.5807 -1.1969 -0.0011 7 6 2.1981 -1.1969 0.0048 8 6 1.4447 -2.5020 0.0106 9 1 0.5304 -2.3971 -0.5735 10 6 1.0914 -2.8819 1.4510 11 7 0.4251 -4.1924 1.4573 12 6 0.0178 -4.5693 2.8174 13 6 1.1513 -5.3434 3.4932 14 1 1.5771 -6.0553 2.7862 15 6 0.6022 -6.0962 4.7068 16 6 2.2365 -4.3654 3.9479 17 6 3.3760 -5.1321 4.5682 18 1 3.3309 -6.2093 4.6314 19 6 4.4765 -4.4586 5.0541 20 7 4.5317 -3.1469 4.9767 21 14 5.8892 -5.4091 5.8223 22 1 6.4564 -6.3479 4.8212 23 1 6.9425 -4.4598 6.2637 24 1 5.3917 -6.1752 6.9931 25 6 1.2919 -5.2204 0.8630 26 1 2.2059 -5.3097 1.4501 27 6 0.5584 -6.5631 0.8520 28 6 1.6431 -4.8170 -0.5715 29 8 2.2614 -3.5275 -0.5609 30 1 -0.3634 0.0041 1.0277 31 1 -0.3634 0.8879 -0.5174 32 1 -0.3633 -0.8920 -0.5102 33 1 1.6582 2.1327 0.0004 34 1 4.1203 2.1328 -0.0091 35 1 5.3517 0.0002 -0.0109 36 1 4.1208 -2.1321 -0.0014 37 1 2.0023 -2.9339 2.0475 38 1 0.4229 -2.1309 1.8720 39 1 -0.2019 -3.6703 3.3932 40 1 -0.8724 -5.1966 2.7695 41 1 0.1180 -5.3915 5.3829 42 1 -0.1234 -6.8391 4.3756 43 1 1.4208 -6.5942 5.2264 44 1 2.6021 -3.8031 3.0886 45 1 1.8199 -3.6762 4.6825 46 1 5.3061 -2.6730 5.3182 47 1 -0.3546 -6.4735 0.2634 48 1 1.2017 -7.3249 0.4117 49 1 0.3059 -6.8474 1.8735 50 1 0.7342 -4.7799 -1.1721 51 1 2.3316 -5.5473 -0.9968 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602475164.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:34 Heat of formation + Delta-G solvation = -18.229010 kcal Electronic energy + Delta-G solvation = -28566.510274 eV Core-core repulsion = 25044.633179 eV Total energy + Delta-G solvation = -3521.877095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.26938 -38.91009 -36.77390 -33.73496 -33.38598 -32.23718 -31.91534 -30.65134 -27.92639 -27.22863 -26.60265 -26.12044 -24.16844 -23.20098 -22.82852 -21.59581 -20.54149 -19.91086 -18.53120 -16.75056 -16.40438 -16.17643 -15.70628 -15.35901 -14.82392 -14.77060 -14.47253 -14.23997 -14.10541 -13.74588 -13.49979 -13.19543 -12.91102 -12.54550 -12.41140 -12.18553 -12.11936 -12.03729 -11.96767 -11.78922 -11.57584 -11.40510 -11.19353 -10.99750 -10.87549 -10.85196 -10.72677 -10.67338 -10.48102 -10.27424 -10.02943 -9.50318 -9.41028 -9.17390 -9.04316 -8.52401 -8.36928 -8.32319 -7.63529 -5.98294 -3.99997 1.52809 1.64252 3.32066 3.37156 3.38991 3.86916 4.02067 4.28836 4.46063 4.97346 4.99052 5.09373 5.11811 5.26020 5.30208 5.35024 5.36495 5.41588 5.49898 5.58777 5.70429 5.71311 5.74089 5.81043 5.84304 5.87677 5.90822 5.95564 6.00020 6.03591 6.06991 6.22351 6.24130 6.32954 6.36945 6.38082 6.44285 6.52682 6.61190 6.66792 6.77627 6.84453 6.91737 7.06085 7.15064 7.22916 7.40669 7.45891 7.51841 7.68854 7.82548 8.00092 8.43879 9.05049 9.63188 11.12139 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.010162 B = 0.005266 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.605279 B = 5316.191086 C = 6894.687754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.078 4.078 3 C -0.127 4.127 4 C -0.118 4.118 5 C -0.127 4.127 6 C -0.080 4.080 7 C -0.078 4.078 8 C 0.138 3.862 9 H 0.071 0.929 10 C 0.013 3.987 11 N -0.528 5.528 12 C 0.059 3.941 13 C -0.134 4.134 14 H 0.076 0.924 15 C -0.130 4.130 16 C 0.024 3.976 17 C -0.516 4.516 18 H 0.053 0.947 19 C 0.059 3.941 20 N -0.892 5.892 21 Si 0.886 3.114 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 C 0.033 3.967 26 H 0.076 0.924 27 C -0.146 4.146 28 C 0.073 3.927 29 O -0.378 6.378 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.130 0.870 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.042 0.958 42 H 0.030 0.970 43 H 0.063 0.937 44 H 0.025 0.975 45 H 0.011 0.989 46 H 0.260 0.740 47 H 0.057 0.943 48 H 0.056 0.944 49 H 0.069 0.931 50 H 0.051 0.949 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.229 3.395 -11.873 14.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.078 4.078 3 C -0.145 4.145 4 C -0.136 4.136 5 C -0.145 4.145 6 C -0.098 4.098 7 C -0.079 4.079 8 C 0.081 3.919 9 H 0.088 0.912 10 C -0.115 4.115 11 N -0.252 5.252 12 C -0.069 4.069 13 C -0.153 4.153 14 H 0.094 0.906 15 C -0.188 4.188 16 C -0.012 4.012 17 C -0.555 4.555 18 H 0.072 0.928 19 C -0.142 4.142 20 N -0.531 5.531 21 Si 0.714 3.286 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.204 1.204 25 C -0.076 4.076 26 H 0.094 0.906 27 C -0.203 4.203 28 C -0.004 4.004 29 O -0.297 6.297 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.148 0.852 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.061 0.939 42 H 0.049 0.951 43 H 0.082 0.918 44 H 0.042 0.958 45 H 0.030 0.970 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.075 0.925 49 H 0.088 0.912 50 H 0.070 0.930 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.373 3.623 -12.193 15.228 hybrid contribution 1.437 -0.517 1.284 1.995 sum -6.936 3.106 -10.908 13.295 Atomic orbital electron populations 1.20874 0.91420 1.02617 1.02570 1.19601 0.95838 0.92338 1.00070 1.20878 0.94241 0.96996 1.02342 1.21087 0.94289 0.97901 1.00351 1.21143 0.99904 0.92492 1.00918 1.21046 0.93627 0.98551 0.96591 1.19405 0.94019 0.92828 1.01639 1.20875 0.92076 0.85137 0.93848 0.91179 1.23098 1.00684 0.91485 0.96195 1.62622 1.40079 1.01700 1.20785 1.22314 0.97619 0.99616 0.87339 1.22128 0.96716 0.99372 0.97102 0.90579 1.21674 0.99913 0.98934 0.98305 1.19353 0.91995 0.93696 0.96176 1.21171 1.02359 0.93106 1.38817 0.92840 1.24989 0.98290 0.94789 0.96176 1.69949 1.29944 1.06522 1.46673 0.86751 0.82295 0.79769 0.79740 1.20331 1.21353 1.20361 1.22418 0.96947 0.92379 0.95818 0.90572 1.21888 1.00163 0.95262 1.03005 1.22678 0.97656 0.84547 0.95514 1.87950 1.43037 1.17140 1.81570 0.90927 0.91759 0.91203 0.86320 0.86428 0.86213 0.85227 0.90188 0.90423 0.91816 0.91847 0.93873 0.95123 0.91825 0.95755 0.97047 0.93055 0.92437 0.92510 0.91203 0.93028 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 9.46 36.00 0.34 -0.99 16 2 C -0.08 -1.10 5.88 -104.62 -0.62 -1.71 16 3 C -0.13 -1.65 9.70 -39.58 -0.38 -2.04 16 4 C -0.12 -1.57 10.05 -39.59 -0.40 -1.97 16 5 C -0.13 -1.88 10.05 -39.58 -0.40 -2.28 16 6 C -0.08 -1.34 9.35 -39.58 -0.37 -1.71 16 7 C -0.08 -1.26 5.07 -104.63 -0.53 -1.79 16 8 C 0.14 2.20 2.53 -27.84 -0.07 2.13 16 9 H 0.07 1.03 6.15 -51.93 -0.32 0.71 16 10 C 0.01 0.23 4.56 -3.71 -0.02 0.21 16 11 N -0.53 -8.66 4.76 -226.34 -1.08 -9.74 16 12 C 0.06 1.00 4.52 -3.82 -0.02 0.98 16 13 C -0.13 -2.63 1.15 -90.62 -0.10 -2.74 16 14 H 0.08 1.50 4.00 -51.93 -0.21 1.30 16 15 C -0.13 -2.41 8.96 37.16 0.33 -2.08 16 16 C 0.02 0.60 3.85 -27.88 -0.11 0.50 16 17 C -0.52 -14.22 8.34 -34.44 -0.29 -14.50 16 18 H 0.05 1.44 6.87 -52.49 -0.36 1.08 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 21 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.03 0.53 1.97 -67.60 -0.13 0.39 16 26 H 0.08 1.50 5.72 -51.93 -0.30 1.20 16 27 C -0.15 -1.96 8.43 37.16 0.31 -1.65 16 28 C 0.07 1.06 6.29 37.21 0.23 1.30 16 29 O -0.38 -6.37 9.31 -35.23 -0.33 -6.70 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 32 H 0.07 0.77 6.02 -51.93 -0.31 0.46 16 33 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 35 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 36 H 0.13 2.30 7.35 -52.49 -0.39 1.91 16 37 H 0.08 1.74 4.81 -51.93 -0.25 1.49 16 38 H 0.08 1.30 7.86 -51.93 -0.41 0.89 16 39 H 0.06 1.13 7.58 -51.93 -0.39 0.74 16 40 H 0.06 0.98 7.72 -51.93 -0.40 0.58 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.06 1.29 6.64 -51.93 -0.35 0.94 16 44 H 0.02 0.65 4.58 -51.93 -0.24 0.42 16 45 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 46 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.07 1.00 5.56 -51.93 -0.29 0.71 16 50 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 380.39 15.07 5.73 5.73 Total: -1.00 -30.04 380.39 -10.68 -40.72 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -8.41 Total: 5.52 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: -2.31 Total: -26.37 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: -0.34 Total: -35.58 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.33 Total: -6.70 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.04 -10.68 -40.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602475164.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.489 kcal (2) G-P(sol) polarization free energy of solvation -30.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds