Wall clock time and date at job start Tue Mar 31 2020 11:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38252 * 120.00393 * 2 1 4 4 C 1.38217 * 120.00398 * 180.23531 * 3 2 1 5 5 C 1.38256 * 119.99692 * 359.80847 * 4 3 2 6 6 C 1.38216 * 120.00065 * 359.97438 * 5 4 3 7 7 C 1.38217 * 119.99869 * 179.79292 * 2 1 3 8 8 C 1.50702 * 120.00157 * 359.97438 * 7 2 1 9 9 H 1.09003 * 109.50259 * 34.73021 * 8 7 2 10 10 C 1.53093 * 109.50614 * 274.64357 * 8 7 2 11 11 N 1.47019 * 109.25586 * 183.16879 * 10 8 7 12 12 C 1.46897 * 110.99839 * 182.38892 * 11 10 8 13 13 C 1.53001 * 109.46938 * 183.94478 * 12 11 10 14 14 H 1.08995 * 109.47400 * 57.65401 * 13 12 11 15 15 C 1.53002 * 109.47009 * 297.64942 * 13 12 11 16 16 C 1.53006 * 109.47047 * 177.65448 * 13 12 11 17 17 C 1.50698 * 109.46977 * 185.00101 * 16 13 12 18 18 H 1.08000 * 120.00032 * 359.97438 * 17 16 13 19 19 C 1.37879 * 120.00125 * 180.02562 * 17 16 13 20 20 N 1.31516 * 119.99551 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00167 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47180 * 59.99805 * 21 19 17 23 23 H 1.48501 * 109.47156 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47325 * 299.99805 * 21 19 17 25 25 C 1.47018 * 110.75066 * 58.61558 * 11 10 8 26 26 H 1.09001 * 109.50466 * 181.44519 * 25 11 10 27 27 C 1.53004 * 109.50545 * 61.36428 * 25 11 10 28 28 C 1.53096 * 109.25950 * 301.38571 * 25 11 10 29 29 O 1.43010 * 109.26185 * 56.84454 * 28 25 11 30 30 H 1.09001 * 109.46858 * 270.21100 * 1 2 3 31 31 H 1.08994 * 109.46982 * 30.20723 * 1 2 3 32 32 H 1.09000 * 109.47394 * 150.21128 * 1 2 3 33 33 H 1.08003 * 120.00089 * 0.06852 * 3 2 1 34 34 H 1.07994 * 120.00148 * 179.83775 * 4 3 2 35 35 H 1.07998 * 120.00311 * 179.97438 * 5 4 3 36 36 H 1.08003 * 120.00210 * 179.97438 * 6 5 4 37 37 H 1.08996 * 109.50832 * 303.10405 * 10 8 7 38 38 H 1.09004 * 109.50918 * 63.23971 * 10 8 7 39 39 H 1.08997 * 109.47390 * 303.94227 * 12 11 10 40 40 H 1.08997 * 109.47066 * 63.94750 * 12 11 10 41 41 H 1.08997 * 109.47593 * 304.86818 * 15 13 12 42 42 H 1.08998 * 109.47186 * 64.86962 * 15 13 12 43 43 H 1.09001 * 109.46839 * 184.86649 * 15 13 12 44 44 H 1.09001 * 109.47036 * 304.99571 * 16 13 12 45 45 H 1.08997 * 109.47361 * 65.00063 * 16 13 12 46 46 H 0.97001 * 119.99288 * 180.02562 * 20 19 17 47 47 H 1.08994 * 109.47478 * 55.08244 * 27 25 11 48 48 H 1.09001 * 109.47100 * 175.08784 * 27 25 11 49 49 H 1.09006 * 109.46757 * 295.08403 * 27 25 11 50 50 H 1.09000 * 109.50618 * 176.78782 * 28 25 11 51 51 H 1.09000 * 109.50039 * 296.87024 * 28 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5805 1.1973 -0.0049 5 6 4.2717 -0.0001 -0.0058 6 6 3.5806 -1.1971 -0.0013 7 6 2.1980 -1.1970 0.0043 8 6 1.4445 -2.5021 0.0096 9 1 0.5310 -2.3973 -0.5758 10 6 1.0883 -2.8809 1.4496 11 7 0.4208 -4.1908 1.4554 12 6 0.0108 -4.5666 2.8149 13 6 -0.5896 -5.9738 2.7959 14 1 0.1410 -6.6752 2.3931 15 6 -1.8424 -5.9818 1.9175 16 6 -0.9631 -6.3883 4.2206 17 6 -1.4397 -7.8179 4.2191 18 1 -1.4734 -8.3750 3.2945 19 6 -1.8339 -8.4144 5.3981 20 7 -1.7934 -7.7358 6.5239 21 14 -2.4254 -10.1863 5.3962 22 1 -1.3429 -11.0690 4.8919 23 1 -2.7878 -10.5886 6.7790 24 1 -3.6153 -10.3100 4.5163 25 6 1.2879 -5.2199 0.8632 26 1 0.7644 -6.1759 0.8543 27 6 2.5688 -5.3466 1.6905 28 6 1.6422 -4.8176 -0.5709 29 8 2.2615 -3.5285 -0.5599 30 1 -0.3633 0.0038 1.0277 31 1 -0.3633 0.8881 -0.5170 32 1 -0.3634 -0.8919 -0.5105 33 1 1.6584 2.1326 0.0011 34 1 4.1204 2.1325 -0.0076 35 1 5.3517 -0.0002 -0.0101 36 1 4.1205 -2.1324 -0.0024 37 1 1.9979 -2.9332 2.0478 38 1 0.4189 -2.1295 1.8686 39 1 0.8790 -4.5510 3.4737 40 1 -0.7340 -3.8587 3.1785 41 1 -2.5376 -5.2194 2.2690 42 1 -1.5637 -5.7711 0.8851 43 1 -2.3185 -6.9608 1.9727 44 1 -0.0896 -6.2972 4.8662 45 1 -1.7578 -5.7407 4.5909 46 1 -2.0703 -8.1556 7.3534 47 1 2.3112 -5.5436 2.7310 48 1 3.1715 -6.1682 1.3034 49 1 3.1361 -4.4180 1.6261 50 1 2.3308 -5.5487 -0.9944 51 1 0.7345 -4.7808 -1.1732 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602475165.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:36 Heat of formation + Delta-G solvation = -45.671105 kcal Electronic energy + Delta-G solvation = -27588.946231 eV Core-core repulsion = 24065.879157 eV Total energy + Delta-G solvation = -3523.067073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.54577 -40.02782 -38.03507 -35.80462 -34.46091 -33.96738 -33.20433 -31.53162 -29.47693 -28.45429 -27.97849 -27.51591 -26.11410 -24.88395 -24.34541 -22.82613 -21.76235 -20.87040 -19.72728 -18.56126 -17.81270 -17.38426 -17.25768 -16.75384 -16.49396 -16.21526 -15.78362 -15.46122 -15.32901 -15.02756 -14.87617 -14.62160 -14.23300 -14.07649 -13.97014 -13.89762 -13.35513 -13.32470 -13.18787 -13.09944 -13.07688 -12.82241 -12.74119 -12.59809 -12.45617 -12.22872 -12.15214 -12.00417 -11.90833 -11.71851 -11.50518 -11.22478 -11.06187 -10.92837 -10.59276 -10.51780 -9.67644 -9.49089 -9.27530 -8.17405 -6.26468 0.40014 0.50755 1.39954 1.42468 1.50049 2.41546 2.66768 2.79462 2.94382 3.16177 3.76631 3.86569 3.92434 3.97140 4.00725 4.09807 4.14904 4.19203 4.24573 4.29393 4.39903 4.47538 4.51642 4.52722 4.59949 4.69197 4.72748 4.76821 4.82031 4.86576 4.87173 4.89046 4.92049 4.99151 5.02470 5.07495 5.16771 5.25576 5.28406 5.33360 5.46673 5.51403 5.55039 5.57432 5.64173 5.71988 5.80224 5.88349 5.99546 6.07896 6.12773 6.24831 6.30274 6.89341 7.41751 8.94557 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.024499 B = 0.002728 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.652568 B =10259.775368 C =10545.332205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.084 4.084 3 C -0.129 4.129 4 C -0.119 4.119 5 C -0.138 4.138 6 C -0.106 4.106 7 C -0.099 4.099 8 C 0.144 3.856 9 H 0.080 0.920 10 C 0.033 3.967 11 N -0.521 5.521 12 C 0.072 3.928 13 C -0.072 4.072 14 H 0.059 0.941 15 C -0.113 4.113 16 C 0.035 3.965 17 C -0.527 4.527 18 H 0.062 0.938 19 C -0.002 4.002 20 N -0.936 5.936 21 Si 0.959 3.041 22 H -0.268 1.268 23 H -0.286 1.286 24 H -0.266 1.266 25 C 0.035 3.965 26 H 0.096 0.904 27 C -0.175 4.175 28 C 0.074 3.926 29 O -0.386 6.386 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.137 0.863 36 H 0.120 0.880 37 H 0.032 0.968 38 H 0.085 0.915 39 H 0.019 0.981 40 H 0.067 0.933 41 H 0.037 0.963 42 H 0.065 0.935 43 H 0.039 0.961 44 H -0.018 1.018 45 H -0.011 1.011 46 H 0.261 0.739 47 H 0.039 0.961 48 H 0.072 0.928 49 H 0.056 0.944 50 H 0.116 0.884 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.489 16.490 -17.179 25.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.084 4.084 3 C -0.146 4.146 4 C -0.136 4.136 5 C -0.155 4.155 6 C -0.124 4.124 7 C -0.100 4.100 8 C 0.086 3.914 9 H 0.098 0.902 10 C -0.095 4.095 11 N -0.245 5.245 12 C -0.055 4.055 13 C -0.091 4.091 14 H 0.077 0.923 15 C -0.170 4.170 16 C -0.003 4.003 17 C -0.565 4.565 18 H 0.080 0.920 19 C -0.200 4.200 20 N -0.577 5.577 21 Si 0.784 3.216 22 H -0.193 1.193 23 H -0.212 1.212 24 H -0.191 1.191 25 C -0.073 4.073 26 H 0.114 0.886 27 C -0.233 4.233 28 C -0.002 4.002 29 O -0.305 6.305 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.155 0.845 36 H 0.138 0.862 37 H 0.051 0.949 38 H 0.103 0.897 39 H 0.038 0.962 40 H 0.085 0.915 41 H 0.057 0.943 42 H 0.084 0.916 43 H 0.058 0.942 44 H 0.000 1.000 45 H 0.007 0.993 46 H 0.070 0.930 47 H 0.058 0.942 48 H 0.091 0.909 49 H 0.075 0.925 50 H 0.134 0.866 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.199 16.550 -17.366 25.692 hybrid contribution 0.217 -1.179 1.516 1.933 sum 9.416 15.370 -15.850 24.003 Atomic orbital electron populations 1.20931 0.90097 1.03699 1.02980 1.19928 0.96995 0.92271 0.99208 1.21297 0.94664 0.97753 1.00917 1.21485 0.94512 0.98767 0.98868 1.21403 1.00887 0.92305 1.00951 1.21083 0.93757 0.98784 0.98786 1.19514 0.94211 0.93068 1.03191 1.20805 0.92751 0.85320 0.92497 0.90239 1.22671 0.97764 0.91970 0.97071 1.62503 1.39622 1.01967 1.20405 1.22053 0.97950 0.97240 0.88283 1.21076 0.97501 0.94114 0.96423 0.92298 1.21489 0.96420 1.00306 0.98793 1.18976 0.94087 0.95135 0.92063 1.21588 1.42597 0.98536 0.93765 0.91969 1.25947 0.96167 1.02487 0.95354 1.70102 1.49554 1.38815 0.99215 0.85584 0.79140 0.79742 0.77107 1.19259 1.21159 1.19120 1.22528 0.92424 0.96722 0.95635 0.88628 1.22266 0.98706 1.02425 0.99920 1.22761 0.99028 0.84410 0.94023 1.87923 1.43256 1.17613 1.81663 0.90728 0.89799 0.91364 0.83847 0.83734 0.84498 0.86230 0.94948 0.89699 0.96241 0.91505 0.94347 0.91628 0.94189 0.99991 0.99261 0.92986 0.94183 0.90882 0.92461 0.86562 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.91 9.44 71.23 0.67 -1.23 16 2 C -0.08 -1.62 5.88 -19.87 -0.12 -1.73 16 3 C -0.13 -2.12 9.70 22.27 0.22 -1.90 16 4 C -0.12 -1.88 10.05 22.27 0.22 -1.65 16 5 C -0.14 -2.49 10.05 22.27 0.22 -2.26 16 6 C -0.11 -2.34 9.35 22.27 0.21 -2.13 16 7 C -0.10 -2.22 5.07 -19.86 -0.10 -2.32 16 8 C 0.14 3.36 2.53 29.88 0.08 3.43 16 9 H 0.08 1.81 6.15 -2.39 -0.01 1.79 16 10 C 0.03 0.87 4.53 86.31 0.39 1.26 16 11 N -0.52 -14.90 4.21 -870.00 -3.67 -18.57 16 12 C 0.07 2.52 4.00 86.30 0.34 2.87 16 13 C -0.07 -2.92 1.86 -10.79 -0.02 -2.94 16 14 H 0.06 2.37 6.11 -2.39 -0.01 2.35 16 15 C -0.11 -4.19 8.82 71.98 0.63 -3.55 16 16 C 0.03 1.84 4.45 29.85 0.13 1.97 16 17 C -0.53 -29.61 8.34 25.60 0.21 -29.40 16 18 H 0.06 3.34 7.08 -2.91 -0.02 3.32 16 19 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 20 N -0.94 -57.47 13.29 21.45 0.28 -57.19 16 21 Si 0.96 44.41 29.54 68.60 2.03 46.43 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 23 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 25 C 0.04 0.94 2.47 44.93 0.11 1.05 16 26 H 0.10 2.70 5.83 -2.39 -0.01 2.69 16 27 C -0.17 -4.75 8.41 71.98 0.61 -4.15 16 28 C 0.07 1.63 6.41 72.01 0.46 2.09 16 29 O -0.39 -9.39 8.68 -148.98 -1.29 -10.68 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.01 8.09 -2.39 -0.02 0.99 16 32 H 0.07 1.13 6.02 -2.39 -0.01 1.11 16 33 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 34 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 36 H 0.12 2.73 7.35 -2.91 -0.02 2.71 16 37 H 0.03 0.93 6.50 -2.39 -0.02 0.91 16 38 H 0.08 2.13 7.98 -2.38 -0.02 2.11 16 39 H 0.02 0.73 6.66 -2.39 -0.02 0.71 16 40 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.06 2.08 7.69 -2.39 -0.02 2.06 16 43 H 0.04 1.60 6.82 -2.39 -0.02 1.58 16 44 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 45 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 46 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 47 H 0.04 1.27 6.39 -2.39 -0.02 1.26 16 48 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 49 H 0.06 1.56 6.21 -2.38 -0.01 1.54 16 50 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 51 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -65.04 386.37 2.98 -62.06 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.89 Total: 18.20 kcal Atomic # 6 Polarization: -45.00 SS G_CDS: 4.74 Total: -40.26 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -3.38 Total: -75.75 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -1.29 Total: -10.68 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -65.04 2.98 -62.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602475165.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.387 kcal (2) G-P(sol) polarization free energy of solvation -65.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds