Wall clock time and date at job start Tue Mar 31 2020 11:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38257 * 120.00211 * 2 1 4 4 C 1.38210 * 119.99926 * 180.23076 * 3 2 1 5 5 C 1.38255 * 120.00296 * 359.81838 * 4 3 2 6 6 C 1.38220 * 119.99518 * 359.97438 * 5 4 3 7 7 C 1.38215 * 119.99661 * 179.79462 * 2 1 3 8 8 C 1.50701 * 120.00387 * 359.97438 * 7 2 1 9 9 H 1.09005 * 109.50510 * 34.81121 * 8 7 2 10 10 C 1.53094 * 109.50367 * 274.72615 * 8 7 2 11 11 N 1.47012 * 109.25552 * 183.17191 * 10 8 7 12 12 C 1.46900 * 111.00104 * 182.39376 * 11 10 8 13 13 C 1.53006 * 109.47303 * 66.04581 * 12 11 10 14 14 H 1.08998 * 109.46505 * 304.99837 * 13 12 11 15 15 C 1.52997 * 109.47127 * 64.99966 * 13 12 11 16 16 C 1.52992 * 109.47223 * 185.00471 * 13 12 11 17 17 C 1.50697 * 109.47463 * 174.99857 * 16 13 12 18 18 H 1.08007 * 119.99713 * 0.02562 * 17 16 13 19 19 C 1.37879 * 120.00558 * 179.97438 * 17 16 13 20 20 N 1.31509 * 119.99821 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00224 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46887 * 59.99783 * 21 19 17 23 23 H 1.48492 * 109.47137 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47042 * 300.00308 * 21 19 17 25 25 C 1.47009 * 110.75740 * 58.61639 * 11 10 8 26 26 H 1.08993 * 109.51456 * 181.45168 * 25 11 10 27 27 C 1.53001 * 109.50534 * 61.31538 * 25 11 10 28 28 C 1.53097 * 109.25527 * 301.38748 * 25 11 10 29 29 O 1.43009 * 109.26201 * 56.84269 * 28 25 11 30 30 H 1.08997 * 109.46616 * 270.20330 * 1 2 3 31 31 H 1.08997 * 109.46797 * 30.20434 * 1 2 3 32 32 H 1.09000 * 109.47203 * 150.20596 * 1 2 3 33 33 H 1.07995 * 119.99779 * 0.07334 * 3 2 1 34 34 H 1.08005 * 119.99716 * 179.83932 * 4 3 2 35 35 H 1.08001 * 120.00292 * 179.97438 * 5 4 3 36 36 H 1.07999 * 119.99551 * 180.02562 * 6 5 4 37 37 H 1.09005 * 109.50823 * 63.23878 * 10 8 7 38 38 H 1.08999 * 109.54560 * 303.13010 * 10 8 7 39 39 H 1.09007 * 109.47006 * 306.04526 * 12 11 10 40 40 H 1.08996 * 109.47541 * 186.04732 * 12 11 10 41 41 H 1.09002 * 109.47153 * 180.02562 * 15 13 12 42 42 H 1.09001 * 109.46832 * 60.00321 * 15 13 12 43 43 H 1.09004 * 109.47261 * 300.00303 * 15 13 12 44 44 H 1.09002 * 109.46906 * 294.99936 * 16 13 12 45 45 H 1.09006 * 109.47717 * 54.99311 * 16 13 12 46 46 H 0.97002 * 120.00259 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.47170 * 60.00509 * 27 25 11 48 48 H 1.09004 * 109.47455 * 180.02562 * 27 25 11 49 49 H 1.09003 * 109.47335 * 300.00638 * 27 25 11 50 50 H 1.09004 * 109.50918 * 296.90674 * 28 25 11 51 51 H 1.09003 * 109.54325 * 176.80282 * 28 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 -0.0048 5 6 4.2718 -0.0001 -0.0058 6 6 3.5806 -1.1970 -0.0015 7 6 2.1981 -1.1970 0.0043 8 6 1.4446 -2.5021 0.0096 9 1 0.5318 -2.3977 -0.5771 10 6 1.0866 -2.8798 1.4493 11 7 0.4193 -4.1897 1.4553 12 6 0.0074 -4.5646 2.8146 13 6 -1.0767 -3.6016 3.3029 14 1 -0.7137 -2.5767 3.2258 15 6 -2.3300 -3.7650 2.4407 16 6 -1.4168 -3.9137 4.7615 17 6 -2.3935 -2.8899 5.2799 18 1 -2.7376 -2.0961 4.6334 19 6 -2.8486 -2.9670 6.5791 20 7 -2.4300 -3.9338 7.3662 21 14 -4.0588 -1.6973 7.2218 22 1 -5.2980 -1.7366 6.4045 23 1 -4.3899 -2.0011 8.6371 24 1 -3.4508 -0.3453 7.1342 25 6 1.2870 -5.2192 0.8650 26 1 0.7635 -6.1752 0.8560 27 6 2.5673 -5.3445 1.6932 28 6 1.6430 -4.8179 -0.5689 29 8 2.2623 -3.5289 -0.5581 30 1 -0.3632 0.0036 1.0277 31 1 -0.3633 0.8881 -0.5170 32 1 -0.3633 -0.8918 -0.5106 33 1 1.6584 2.1326 0.0012 34 1 4.1205 2.1326 -0.0074 35 1 5.3518 -0.0001 -0.0100 36 1 4.1206 -2.1323 -0.0019 37 1 0.4167 -2.1282 1.8670 38 1 1.9951 -2.9314 2.0494 39 1 0.8675 -4.5123 3.4823 40 1 -0.3859 -5.5811 2.8078 41 1 -3.1021 -3.0786 2.7883 42 1 -2.6929 -4.7899 2.5179 43 1 -2.0877 -3.5426 1.4015 44 1 -1.8624 -4.9064 4.8263 45 1 -0.5070 -3.8842 5.3612 46 1 -2.7499 -3.9879 8.2803 47 1 2.3130 -5.6264 2.7150 48 1 3.2105 -6.1076 1.2549 49 1 3.0908 -4.3884 1.6998 50 1 0.7361 -4.7810 -1.1724 51 1 2.3319 -5.5492 -0.9918 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602475166.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:39 Heat of formation + Delta-G solvation = -32.519379 kcal Electronic energy + Delta-G solvation = -27863.829077 eV Core-core repulsion = 24341.332305 eV Total energy + Delta-G solvation = -3522.496772 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.50378 -39.02247 -36.62601 -34.40411 -33.52110 -32.40756 -31.96850 -30.33153 -28.07647 -27.06952 -26.66659 -26.59180 -24.68697 -23.94817 -22.58100 -21.85078 -20.72332 -19.27865 -18.78346 -16.98521 -16.49064 -16.41134 -16.08821 -15.29878 -15.19559 -14.89199 -14.52978 -14.45673 -14.20904 -13.90479 -13.62069 -13.31588 -13.18884 -13.03722 -12.58319 -12.47905 -12.31908 -12.21519 -12.10473 -11.94888 -11.63043 -11.40053 -11.26425 -11.19700 -11.10233 -10.92765 -10.84825 -10.69853 -10.33351 -10.29508 -10.23407 -9.69838 -9.57672 -9.13771 -8.96144 -8.80462 -8.61523 -8.32379 -8.05012 -5.97405 -3.98560 1.25875 1.35879 3.34153 3.38715 3.40924 3.58509 3.73806 4.02727 4.48209 4.72375 4.79559 4.84194 4.87001 4.99509 5.03554 5.08190 5.14417 5.21608 5.36790 5.38411 5.42889 5.53641 5.57170 5.64098 5.65557 5.66820 5.73327 5.78067 5.84838 5.91099 5.91867 6.01562 6.05730 6.14973 6.16646 6.28653 6.38542 6.40905 6.46654 6.53552 6.58609 6.67245 6.94975 6.98886 7.08578 7.16313 7.19258 7.32995 7.37263 7.69026 7.85040 8.02486 8.46507 9.07423 9.64769 11.14124 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012092 B = 0.003772 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.053401 B = 7421.449394 C = 8857.924320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.071 4.071 3 C -0.123 4.123 4 C -0.117 4.117 5 C -0.132 4.132 6 C -0.090 4.090 7 C -0.081 4.081 8 C 0.136 3.864 9 H 0.078 0.922 10 C 0.028 3.972 11 N -0.525 5.525 12 C 0.061 3.939 13 C -0.081 4.081 14 H 0.055 0.945 15 C -0.122 4.122 16 C 0.028 3.972 17 C -0.512 4.512 18 H 0.055 0.945 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.889 3.111 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.041 3.959 26 H 0.090 0.910 27 C -0.182 4.182 28 C 0.072 3.928 29 O -0.379 6.379 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.127 0.873 37 H 0.092 0.908 38 H 0.045 0.955 39 H 0.032 0.968 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.039 0.961 43 H 0.041 0.959 44 H 0.015 0.985 45 H 0.011 0.989 46 H 0.260 0.740 47 H 0.059 0.941 48 H 0.057 0.943 49 H 0.062 0.938 50 H 0.057 0.943 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.494 3.484 -17.964 21.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.071 4.071 3 C -0.141 4.141 4 C -0.135 4.135 5 C -0.150 4.150 6 C -0.108 4.108 7 C -0.082 4.082 8 C 0.078 3.922 9 H 0.095 0.905 10 C -0.101 4.101 11 N -0.249 5.249 12 C -0.066 4.066 13 C -0.100 4.100 14 H 0.073 0.927 15 C -0.179 4.179 16 C -0.009 4.009 17 C -0.551 4.551 18 H 0.073 0.927 19 C -0.144 4.144 20 N -0.537 5.537 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.068 4.068 26 H 0.108 0.892 27 C -0.240 4.240 28 C -0.005 4.005 29 O -0.298 6.298 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.145 0.855 37 H 0.111 0.889 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.034 0.966 45 H 0.030 0.970 46 H 0.069 0.931 47 H 0.078 0.922 48 H 0.076 0.924 49 H 0.081 0.919 50 H 0.076 0.924 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.219 3.471 -18.141 21.610 hybrid contribution -0.099 0.473 1.243 1.333 sum 11.120 3.944 -16.898 20.610 Atomic orbital electron populations 1.20943 0.90917 1.02953 1.03229 1.19707 0.96216 0.92241 0.98928 1.20972 0.94242 0.97297 1.01606 1.21126 0.94331 0.97983 1.00084 1.21123 0.99757 0.92534 1.01593 1.20978 0.93568 0.98262 0.97982 1.19423 0.93934 0.92922 1.01901 1.20912 0.92447 0.84954 0.93847 0.90481 1.22743 0.98606 0.92998 0.95708 1.62486 1.38492 1.01196 1.22747 1.22348 0.97837 1.00180 0.86250 1.21229 0.93576 0.97122 0.98048 0.92706 1.21576 0.97719 1.00801 0.97806 1.19108 0.96306 0.96991 0.88516 1.21181 1.25605 1.11706 0.96577 0.92664 1.25007 0.96665 0.95677 0.97097 1.69951 1.44499 1.32102 1.07120 0.86709 0.81760 0.81999 0.77846 1.20256 1.21371 1.20316 1.22388 0.92892 0.96538 0.95000 0.89177 1.22363 0.98525 1.02378 1.00774 1.22645 0.98077 0.84608 0.95153 1.87913 1.42815 1.17111 1.81923 0.90295 0.91491 0.90998 0.85995 0.86277 0.86270 0.85529 0.88937 0.93731 0.94952 0.91183 0.92786 0.94202 0.94039 0.96629 0.97038 0.93052 0.92202 0.92418 0.91940 0.92434 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 9.43 36.01 0.34 -0.98 16 2 C -0.07 -0.84 5.88 -104.62 -0.62 -1.46 16 3 C -0.12 -1.33 9.70 -39.58 -0.38 -1.72 16 4 C -0.12 -1.20 10.05 -39.59 -0.40 -1.60 16 5 C -0.13 -1.41 10.05 -39.58 -0.40 -1.81 16 6 C -0.09 -1.09 9.35 -39.58 -0.37 -1.46 16 7 C -0.08 -1.03 5.07 -104.62 -0.53 -1.56 16 8 C 0.14 1.74 2.52 -27.83 -0.07 1.67 16 9 H 0.08 0.99 6.16 -51.93 -0.32 0.67 16 10 C 0.03 0.39 4.31 -3.71 -0.02 0.38 16 11 N -0.53 -7.61 4.13 -226.34 -0.94 -8.54 16 12 C 0.06 1.04 3.72 -3.82 -0.01 1.02 16 13 C -0.08 -1.63 2.26 -90.62 -0.20 -1.83 16 14 H 0.05 1.13 6.29 -51.93 -0.33 0.80 16 15 C -0.12 -2.31 8.89 37.16 0.33 -1.98 16 16 C 0.03 0.72 4.45 -27.89 -0.12 0.60 16 17 C -0.51 -14.25 8.41 -34.44 -0.29 -14.54 16 18 H 0.06 1.49 7.06 -52.48 -0.37 1.12 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 21 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.04 0.50 2.97 -67.60 -0.20 0.30 16 26 H 0.09 1.05 8.09 -51.93 -0.42 0.63 16 27 C -0.18 -2.19 8.39 37.16 0.31 -1.88 16 28 C 0.07 0.79 6.41 37.21 0.24 1.03 16 29 O -0.38 -4.81 8.76 -35.23 -0.31 -5.11 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 32 H 0.07 0.76 6.03 -51.93 -0.31 0.45 16 33 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 36 H 0.13 1.50 7.35 -52.49 -0.39 1.12 16 37 H 0.09 1.43 6.11 -51.93 -0.32 1.12 16 38 H 0.04 0.68 6.39 -51.93 -0.33 0.35 16 39 H 0.03 0.58 6.88 -51.93 -0.36 0.22 16 40 H 0.07 1.19 8.04 -51.93 -0.42 0.78 16 41 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.04 0.70 7.75 -51.93 -0.40 0.30 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 47 H 0.06 0.78 6.69 -51.93 -0.35 0.44 16 48 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.06 0.82 6.07 -51.93 -0.32 0.50 16 50 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 51 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 387.77 15.07 5.84 5.84 Total: -1.00 -30.07 387.77 -10.94 -41.01 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -8.77 Total: 0.68 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: -2.49 Total: -24.31 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: -0.20 Total: -34.75 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: -0.31 Total: -5.11 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.07 -10.94 -41.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602475166.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.494 kcal (2) G-P(sol) polarization free energy of solvation -30.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds