Wall clock time and date at job start Tue Mar 31 2020 11:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38257 * 120.00211 * 2 1 4 4 C 1.38210 * 119.99926 * 180.23076 * 3 2 1 5 5 C 1.38255 * 120.00296 * 359.81838 * 4 3 2 6 6 C 1.38220 * 119.99518 * 359.97438 * 5 4 3 7 7 C 1.38215 * 119.99661 * 179.79462 * 2 1 3 8 8 C 1.50701 * 120.00387 * 359.97438 * 7 2 1 9 9 H 1.09005 * 109.50510 * 34.81121 * 8 7 2 10 10 C 1.53094 * 109.50367 * 274.72615 * 8 7 2 11 11 N 1.47012 * 109.25552 * 183.17191 * 10 8 7 12 12 C 1.46900 * 111.00104 * 182.39376 * 11 10 8 13 13 C 1.53006 * 109.47303 * 66.04581 * 12 11 10 14 14 H 1.08998 * 109.46505 * 304.99837 * 13 12 11 15 15 C 1.52997 * 109.47127 * 64.99966 * 13 12 11 16 16 C 1.52992 * 109.47223 * 185.00471 * 13 12 11 17 17 C 1.50697 * 109.47463 * 174.99857 * 16 13 12 18 18 H 1.08007 * 119.99713 * 0.02562 * 17 16 13 19 19 C 1.37879 * 120.00558 * 179.97438 * 17 16 13 20 20 N 1.31509 * 119.99821 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00224 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46887 * 59.99783 * 21 19 17 23 23 H 1.48492 * 109.47137 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47042 * 300.00308 * 21 19 17 25 25 C 1.47009 * 110.75740 * 58.61639 * 11 10 8 26 26 H 1.08993 * 109.51456 * 181.45168 * 25 11 10 27 27 C 1.53001 * 109.50534 * 61.31538 * 25 11 10 28 28 C 1.53097 * 109.25527 * 301.38748 * 25 11 10 29 29 O 1.43009 * 109.26201 * 56.84269 * 28 25 11 30 30 H 1.08997 * 109.46616 * 270.20330 * 1 2 3 31 31 H 1.08997 * 109.46797 * 30.20434 * 1 2 3 32 32 H 1.09000 * 109.47203 * 150.20596 * 1 2 3 33 33 H 1.07995 * 119.99779 * 0.07334 * 3 2 1 34 34 H 1.08005 * 119.99716 * 179.83932 * 4 3 2 35 35 H 1.08001 * 120.00292 * 179.97438 * 5 4 3 36 36 H 1.07999 * 119.99551 * 180.02562 * 6 5 4 37 37 H 1.09005 * 109.50823 * 63.23878 * 10 8 7 38 38 H 1.08999 * 109.54560 * 303.13010 * 10 8 7 39 39 H 1.09007 * 109.47006 * 306.04526 * 12 11 10 40 40 H 1.08996 * 109.47541 * 186.04732 * 12 11 10 41 41 H 1.09002 * 109.47153 * 180.02562 * 15 13 12 42 42 H 1.09001 * 109.46832 * 60.00321 * 15 13 12 43 43 H 1.09004 * 109.47261 * 300.00303 * 15 13 12 44 44 H 1.09002 * 109.46906 * 294.99936 * 16 13 12 45 45 H 1.09006 * 109.47717 * 54.99311 * 16 13 12 46 46 H 0.97002 * 120.00259 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.47170 * 60.00509 * 27 25 11 48 48 H 1.09004 * 109.47455 * 180.02562 * 27 25 11 49 49 H 1.09003 * 109.47335 * 300.00638 * 27 25 11 50 50 H 1.09004 * 109.50918 * 296.90674 * 28 25 11 51 51 H 1.09003 * 109.54325 * 176.80282 * 28 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 -0.0048 5 6 4.2718 -0.0001 -0.0058 6 6 3.5806 -1.1970 -0.0015 7 6 2.1981 -1.1970 0.0043 8 6 1.4446 -2.5021 0.0096 9 1 0.5318 -2.3977 -0.5771 10 6 1.0866 -2.8798 1.4493 11 7 0.4193 -4.1897 1.4553 12 6 0.0074 -4.5646 2.8146 13 6 -1.0767 -3.6016 3.3029 14 1 -0.7137 -2.5767 3.2258 15 6 -2.3300 -3.7650 2.4407 16 6 -1.4168 -3.9137 4.7615 17 6 -2.3935 -2.8899 5.2799 18 1 -2.7376 -2.0961 4.6334 19 6 -2.8486 -2.9670 6.5791 20 7 -2.4300 -3.9338 7.3662 21 14 -4.0588 -1.6973 7.2218 22 1 -5.2980 -1.7366 6.4045 23 1 -4.3899 -2.0011 8.6371 24 1 -3.4508 -0.3453 7.1342 25 6 1.2870 -5.2192 0.8650 26 1 0.7635 -6.1752 0.8560 27 6 2.5673 -5.3445 1.6932 28 6 1.6430 -4.8179 -0.5689 29 8 2.2623 -3.5289 -0.5581 30 1 -0.3632 0.0036 1.0277 31 1 -0.3633 0.8881 -0.5170 32 1 -0.3633 -0.8918 -0.5106 33 1 1.6584 2.1326 0.0012 34 1 4.1205 2.1326 -0.0074 35 1 5.3518 -0.0001 -0.0100 36 1 4.1206 -2.1323 -0.0019 37 1 0.4167 -2.1282 1.8670 38 1 1.9951 -2.9314 2.0494 39 1 0.8675 -4.5123 3.4823 40 1 -0.3859 -5.5811 2.8078 41 1 -3.1021 -3.0786 2.7883 42 1 -2.6929 -4.7899 2.5179 43 1 -2.0877 -3.5426 1.4015 44 1 -1.8624 -4.9064 4.8263 45 1 -0.5070 -3.8842 5.3612 46 1 -2.7499 -3.9879 8.2803 47 1 2.3130 -5.6264 2.7150 48 1 3.2105 -6.1076 1.2549 49 1 3.0908 -4.3884 1.6998 50 1 0.7361 -4.7810 -1.1724 51 1 2.3319 -5.5492 -0.9918 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602475166.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:38 Heat of formation + Delta-G solvation = -47.853863 kcal Electronic energy + Delta-G solvation = -27864.494030 eV Core-core repulsion = 24341.332305 eV Total energy + Delta-G solvation = -3523.161725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.51467 -39.95508 -37.96441 -35.94897 -34.51068 -34.06200 -33.12085 -31.39667 -29.43731 -28.48869 -27.98544 -27.51286 -26.18230 -24.99594 -24.28762 -22.80142 -21.61752 -20.69337 -20.08778 -18.54459 -17.80449 -17.44728 -17.28334 -16.53433 -16.30985 -16.23057 -15.98149 -15.47624 -15.28430 -15.07700 -14.83539 -14.52581 -14.38915 -14.12307 -13.96137 -13.85233 -13.47548 -13.37331 -13.13135 -13.05338 -12.99824 -12.84360 -12.74930 -12.61133 -12.40354 -12.24671 -12.19019 -11.97647 -11.94672 -11.79650 -11.40458 -11.24702 -11.06949 -10.98239 -10.56376 -10.52045 -9.67899 -9.49279 -9.28039 -8.17308 -6.26412 0.40008 0.50553 1.39785 1.42384 1.49987 2.41638 2.66756 2.79071 2.93863 3.16246 3.77142 3.86045 3.91695 3.96427 4.01201 4.10610 4.12019 4.16291 4.24783 4.35372 4.39372 4.46964 4.49663 4.52068 4.62007 4.70381 4.73937 4.77007 4.83049 4.84580 4.86358 4.91001 4.93548 4.98638 5.00490 5.05845 5.16675 5.26560 5.28145 5.32783 5.46360 5.50598 5.54656 5.56755 5.63365 5.71965 5.79340 5.88217 5.99209 6.09258 6.12790 6.24740 6.30986 6.89059 7.41842 8.94634 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012092 B = 0.003772 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.053401 B = 7421.449394 C = 8857.924320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.085 4.085 3 C -0.131 4.131 4 C -0.119 4.119 5 C -0.137 4.137 6 C -0.104 4.104 7 C -0.101 4.101 8 C 0.147 3.853 9 H 0.079 0.921 10 C 0.034 3.966 11 N -0.523 5.523 12 C 0.074 3.926 13 C -0.071 4.071 14 H 0.050 0.950 15 C -0.110 4.110 16 C 0.035 3.965 17 C -0.528 4.528 18 H 0.061 0.939 19 C -0.001 4.001 20 N -0.936 5.936 21 Si 0.959 3.041 22 H -0.266 1.266 23 H -0.285 1.285 24 H -0.268 1.268 25 C 0.038 3.962 26 H 0.102 0.898 27 C -0.176 4.176 28 C 0.072 3.928 29 O -0.385 6.385 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.123 0.877 37 H 0.077 0.923 38 H 0.030 0.970 39 H 0.018 0.982 40 H 0.072 0.928 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.065 0.935 44 H -0.009 1.009 45 H -0.019 1.019 46 H 0.262 0.738 47 H 0.043 0.957 48 H 0.080 0.920 49 H 0.048 0.952 50 H 0.064 0.936 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.622 4.618 -19.770 23.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.085 4.085 3 C -0.149 4.149 4 C -0.136 4.136 5 C -0.155 4.155 6 C -0.123 4.123 7 C -0.101 4.101 8 C 0.089 3.911 9 H 0.096 0.904 10 C -0.094 4.094 11 N -0.247 5.247 12 C -0.053 4.053 13 C -0.090 4.090 14 H 0.068 0.932 15 C -0.167 4.167 16 C -0.003 4.003 17 C -0.566 4.566 18 H 0.079 0.921 19 C -0.198 4.198 20 N -0.576 5.576 21 Si 0.783 3.217 22 H -0.191 1.191 23 H -0.211 1.211 24 H -0.193 1.193 25 C -0.071 4.071 26 H 0.120 0.880 27 C -0.234 4.234 28 C -0.004 4.004 29 O -0.304 6.304 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.159 0.841 34 H 0.163 0.837 35 H 0.158 0.842 36 H 0.141 0.859 37 H 0.096 0.904 38 H 0.048 0.952 39 H 0.036 0.964 40 H 0.090 0.910 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.084 0.916 44 H 0.009 0.991 45 H -0.001 1.001 46 H 0.070 0.930 47 H 0.062 0.938 48 H 0.098 0.902 49 H 0.067 0.933 50 H 0.082 0.918 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.352 4.605 -19.971 23.429 hybrid contribution -0.066 0.105 1.798 1.802 sum 11.287 4.710 -18.173 21.905 Atomic orbital electron populations 1.20927 0.90404 1.03752 1.02690 1.19924 0.96826 0.92505 0.99233 1.21295 0.94830 0.97693 1.01035 1.21484 0.94354 0.98924 0.98884 1.21418 1.00948 0.92225 1.00885 1.21085 0.93572 0.98876 0.98724 1.19535 0.94367 0.93085 1.03143 1.20756 0.92620 0.85340 0.92373 0.90391 1.22656 0.97411 0.92469 0.96860 1.62442 1.39605 1.02014 1.20595 1.22043 0.96337 0.99268 0.87685 1.21019 0.95344 0.97588 0.95059 0.93212 1.21454 0.96324 1.00226 0.98746 1.18983 0.94331 0.95318 0.91619 1.21586 1.25845 1.12150 0.97017 0.92113 1.25926 0.98625 0.97781 0.97451 1.70093 1.45977 1.34071 1.07494 0.85598 0.79479 0.79379 0.77213 1.19079 1.21052 1.19330 1.22548 0.92542 0.96252 0.95715 0.88011 1.22296 0.98751 1.02332 1.00033 1.22813 0.99134 0.84394 0.94081 1.87919 1.43146 1.17685 1.81690 0.91426 0.89752 0.91164 0.84093 0.83683 0.84217 0.85872 0.90448 0.95224 0.96358 0.90981 0.94360 0.94382 0.91559 0.99076 1.00087 0.92970 0.93811 0.90153 0.93256 0.91768 0.86054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.49 9.43 71.24 0.67 -1.82 16 2 C -0.08 -1.95 5.88 -19.86 -0.12 -2.06 16 3 C -0.13 -2.61 9.70 22.27 0.22 -2.40 16 4 C -0.12 -2.19 10.05 22.27 0.22 -1.97 16 5 C -0.14 -2.73 10.05 22.27 0.22 -2.50 16 6 C -0.10 -2.48 9.35 22.27 0.21 -2.27 16 7 C -0.10 -2.51 5.07 -19.87 -0.10 -2.61 16 8 C 0.15 3.69 2.52 29.88 0.08 3.77 16 9 H 0.08 1.94 6.16 -2.38 -0.01 1.92 16 10 C 0.03 0.99 4.31 86.31 0.37 1.36 16 11 N -0.52 -14.93 4.13 -870.01 -3.60 -18.52 16 12 C 0.07 2.59 3.72 86.31 0.32 2.91 16 13 C -0.07 -2.94 2.26 -10.79 -0.02 -2.96 16 14 H 0.05 2.10 6.29 -2.39 -0.02 2.08 16 15 C -0.11 -4.15 8.89 71.98 0.64 -3.51 16 16 C 0.04 1.86 4.45 29.84 0.13 1.99 16 17 C -0.53 -29.95 8.41 25.60 0.22 -29.74 16 18 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16 19 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 20 N -0.94 -57.53 13.29 21.45 0.28 -57.25 16 21 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 25 C 0.04 0.87 2.97 44.93 0.13 1.01 16 26 H 0.10 2.15 8.09 -2.39 -0.02 2.13 16 27 C -0.18 -4.12 8.39 71.98 0.60 -3.51 16 28 C 0.07 1.42 6.41 72.01 0.46 1.89 16 29 O -0.39 -9.29 8.76 -148.98 -1.30 -10.60 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 1.39 8.09 -2.39 -0.02 1.37 16 32 H 0.07 1.43 6.03 -2.39 -0.01 1.42 16 33 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 35 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 36 H 0.12 2.90 7.35 -2.91 -0.02 2.88 16 37 H 0.08 2.46 6.11 -2.38 -0.01 2.44 16 38 H 0.03 0.94 6.39 -2.39 -0.02 0.93 16 39 H 0.02 0.68 6.88 -2.38 -0.02 0.67 16 40 H 0.07 2.48 8.04 -2.39 -0.02 2.46 16 41 H 0.04 1.54 6.95 -2.39 -0.02 1.52 16 42 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.07 2.15 7.75 -2.38 -0.02 2.14 16 44 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 45 H -0.02 -1.12 8.14 -2.38 -0.02 -1.14 16 46 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 47 H 0.04 1.15 6.69 -2.39 -0.02 1.14 16 48 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.05 1.29 6.07 -2.39 -0.01 1.27 16 50 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 51 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -65.73 387.77 3.02 -62.71 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.89 Total: 19.06 kcal Atomic # 6 Polarization: -46.72 SS G_CDS: 4.72 Total: -42.00 kcal Atomic # 7 Polarization: -72.46 SS G_CDS: -3.31 Total: -75.77 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -1.30 Total: -10.60 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -65.73 3.02 -62.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602475166.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.854 kcal (2) G-P(sol) polarization free energy of solvation -65.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds