Wall clock time and date at job start Tue Mar 31 2020 11:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38256 * 119.99453 * 2 1 4 4 C 1.38216 * 120.00043 * 180.24983 * 3 2 1 5 5 C 1.38265 * 119.99498 * 359.79281 * 4 3 2 6 6 C 1.38214 * 120.00095 * 359.95650 * 5 4 3 7 7 C 1.38208 * 120.00360 * 179.76970 * 2 1 3 8 8 C 1.50704 * 119.99967 * 359.97438 * 7 2 1 9 9 H 1.08999 * 109.54086 * 34.61845 * 8 7 2 10 10 C 1.53095 * 109.50781 * 274.50946 * 8 7 2 11 11 N 1.47011 * 109.25793 * 183.21752 * 10 8 7 12 12 C 1.46903 * 110.99889 * 182.39541 * 11 10 8 13 13 C 1.53001 * 109.47072 * 65.53276 * 12 11 10 14 14 H 1.08997 * 109.47346 * 303.04273 * 13 12 11 15 15 C 1.52997 * 109.47486 * 63.04996 * 13 12 11 16 16 C 1.53005 * 109.47054 * 183.04780 * 13 12 11 17 17 C 1.50700 * 109.47307 * 174.99788 * 16 13 12 18 18 H 1.08001 * 119.99657 * 0.02562 * 17 16 13 19 19 C 1.37871 * 120.00091 * 179.97438 * 17 16 13 20 20 N 1.31521 * 120.00113 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00155 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46981 * 60.00282 * 21 19 17 23 23 H 1.48496 * 109.47186 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46935 * 300.00282 * 21 19 17 25 25 C 1.47010 * 110.75211 * 58.61746 * 11 10 8 26 26 H 1.08999 * 109.50907 * 61.31930 * 25 11 10 27 27 C 1.53008 * 109.50404 * 181.40687 * 25 11 10 28 28 C 1.53089 * 109.25851 * 301.38133 * 25 11 10 29 29 O 1.43016 * 109.50410 * 154.72801 * 8 7 2 30 30 H 1.08997 * 109.47362 * 270.22984 * 1 2 3 31 31 H 1.08998 * 109.47628 * 30.23825 * 1 2 3 32 32 H 1.09009 * 109.46522 * 150.22780 * 1 2 3 33 33 H 1.08005 * 120.00612 * 0.02562 * 3 2 1 34 34 H 1.07996 * 120.00552 * 179.76740 * 4 3 2 35 35 H 1.08002 * 119.99466 * 179.97438 * 5 4 3 36 36 H 1.07999 * 120.00003 * 179.97438 * 6 5 4 37 37 H 1.09000 * 109.50721 * 303.15557 * 10 8 7 38 38 H 1.09009 * 109.50405 * 63.23579 * 10 8 7 39 39 H 1.08999 * 109.47047 * 185.52986 * 12 11 10 40 40 H 1.08996 * 109.47237 * 305.53191 * 12 11 10 41 41 H 1.08999 * 109.46896 * 65.53273 * 15 13 12 42 42 H 1.08995 * 109.47294 * 185.53770 * 15 13 12 43 43 H 1.09004 * 109.46766 * 305.54245 * 15 13 12 44 44 H 1.09003 * 109.47095 * 295.00209 * 16 13 12 45 45 H 1.09000 * 109.46756 * 55.00037 * 16 13 12 46 46 H 0.96993 * 119.99682 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.47205 * 60.00074 * 27 25 11 48 48 H 1.09001 * 109.46860 * 180.02562 * 27 25 11 49 49 H 1.09002 * 109.46623 * 299.99936 * 27 25 11 50 50 H 1.08998 * 109.51368 * 296.91760 * 28 25 11 51 51 H 1.09008 * 109.51187 * 176.78349 * 28 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 -0.0052 5 6 4.2717 0.0002 -0.0061 6 6 3.5807 -1.1968 -0.0009 7 6 2.1981 -1.1969 0.0048 8 6 1.4447 -2.5020 0.0106 9 1 0.5301 -2.3976 -0.5730 10 6 1.0914 -2.8820 1.4510 11 7 0.4251 -4.1924 1.4573 12 6 0.0177 -4.5693 2.8174 13 6 -1.0565 -3.6000 3.3151 14 1 -0.6737 -2.5804 3.2725 15 6 -2.2983 -3.7160 2.4289 16 6 -1.4263 -3.9460 4.7589 17 6 -2.3925 -2.9187 5.2900 18 1 -2.7113 -2.1010 4.6605 19 6 -2.8703 -3.0232 6.5790 20 7 -2.4824 -4.0192 7.3454 21 14 -4.0685 -1.7502 7.2372 22 1 -5.2947 -1.7450 6.3995 23 1 -4.4282 -2.0867 8.6381 24 1 -3.4357 -0.4074 7.1969 25 6 1.2919 -5.2203 0.8630 26 1 2.2059 -5.3097 1.4502 27 6 0.5584 -6.5631 0.8521 28 6 1.6432 -4.8170 -0.5714 29 8 2.2615 -3.5275 -0.5609 30 1 -0.3634 0.0041 1.0276 31 1 -0.3634 0.8878 -0.5175 32 1 -0.3633 -0.8921 -0.5103 33 1 1.6582 2.1328 0.0004 34 1 4.1203 2.1328 -0.0090 35 1 5.3517 0.0003 -0.0106 36 1 4.1207 -2.1321 -0.0020 37 1 2.0022 -2.9338 2.0476 38 1 0.4229 -2.1309 1.8720 39 1 -0.3834 -5.5828 2.8089 40 1 0.8815 -4.5259 3.4806 41 1 -2.7379 -4.7063 2.5474 42 1 -3.0253 -2.9583 2.7211 43 1 -2.0161 -3.5662 1.3867 44 1 -1.8909 -4.9316 4.7887 45 1 -0.5260 -3.9500 5.3734 46 1 -2.8183 -4.0925 8.2524 47 1 -0.3546 -6.4736 0.2635 48 1 1.2017 -7.3249 0.4118 49 1 0.3058 -6.8474 1.8736 50 1 0.7344 -4.7799 -1.1721 51 1 2.3317 -5.5473 -0.9967 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602475167.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:42 Heat of formation + Delta-G solvation = -32.849514 kcal Electronic energy + Delta-G solvation = -27715.280551 eV Core-core repulsion = 24192.769464 eV Total energy + Delta-G solvation = -3522.511087 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.38920 -38.96222 -36.66801 -34.42210 -33.57383 -32.51367 -31.94804 -30.69609 -27.96829 -27.20483 -26.68117 -26.44581 -24.67402 -23.31002 -22.60338 -21.78553 -20.64184 -19.95521 -18.90475 -16.95362 -16.60511 -16.32791 -15.89542 -15.40965 -15.06569 -14.85322 -14.59390 -14.47220 -14.10462 -13.91442 -13.73476 -13.55197 -13.15514 -12.90487 -12.59332 -12.48636 -12.27205 -12.19380 -12.14637 -11.93397 -11.65968 -11.39225 -11.24939 -11.17833 -11.08345 -10.92027 -10.85594 -10.72763 -10.38364 -10.32328 -10.20945 -9.66311 -9.58145 -9.13345 -8.96123 -8.80833 -8.61936 -8.32309 -8.09964 -5.97373 -3.98565 1.25402 1.35611 3.34172 3.38706 3.40920 3.57462 3.72807 3.98245 4.48169 4.71850 4.77425 4.79806 4.86219 4.98145 5.02443 5.10269 5.15786 5.20279 5.33816 5.38409 5.45487 5.50999 5.57916 5.62805 5.65637 5.69939 5.76069 5.78894 5.83951 5.87946 5.94896 6.00351 6.03109 6.15420 6.16447 6.24150 6.40024 6.42004 6.46268 6.52302 6.57995 6.68020 6.94651 7.00237 7.07707 7.14501 7.18315 7.32765 7.37124 7.68842 7.84944 8.02513 8.46551 9.07449 9.64827 11.14172 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011408 B = 0.003813 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.850809 B = 7341.352911 C = 9053.690718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.071 4.071 3 C -0.123 4.123 4 C -0.117 4.117 5 C -0.132 4.132 6 C -0.090 4.090 7 C -0.082 4.082 8 C 0.136 3.864 9 H 0.079 0.921 10 C 0.031 3.969 11 N -0.527 5.527 12 C 0.057 3.943 13 C -0.081 4.081 14 H 0.054 0.946 15 C -0.121 4.121 16 C 0.028 3.972 17 C -0.512 4.512 18 H 0.055 0.945 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.889 3.111 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.278 1.278 25 C 0.042 3.958 26 H 0.045 0.955 27 C -0.146 4.146 28 C 0.072 3.928 29 O -0.382 6.382 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.127 0.873 37 H 0.039 0.961 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.028 0.972 41 H 0.040 0.960 42 H 0.050 0.950 43 H 0.043 0.957 44 H 0.016 0.984 45 H 0.011 0.989 46 H 0.260 0.740 47 H 0.065 0.935 48 H 0.057 0.943 49 H 0.065 0.935 50 H 0.059 0.941 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.951 3.254 -18.195 21.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.071 4.071 3 C -0.141 4.141 4 C -0.135 4.135 5 C -0.150 4.150 6 C -0.108 4.108 7 C -0.082 4.082 8 C 0.078 3.922 9 H 0.096 0.904 10 C -0.097 4.097 11 N -0.252 5.252 12 C -0.070 4.070 13 C -0.099 4.099 14 H 0.072 0.928 15 C -0.178 4.178 16 C -0.009 4.009 17 C -0.550 4.550 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.067 4.067 26 H 0.063 0.937 27 C -0.203 4.203 28 C -0.005 4.005 29 O -0.301 6.301 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.145 0.855 37 H 0.058 0.942 38 H 0.113 0.887 39 H 0.096 0.904 40 H 0.046 0.954 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.034 0.966 45 H 0.030 0.970 46 H 0.069 0.931 47 H 0.084 0.916 48 H 0.076 0.924 49 H 0.084 0.916 50 H 0.077 0.923 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.681 3.230 -18.374 21.497 hybrid contribution -0.078 0.527 1.258 1.366 sum 10.603 3.757 -17.116 20.482 Atomic orbital electron populations 1.20944 0.90904 1.02963 1.03234 1.19703 0.96221 0.92227 0.98918 1.20976 0.94243 0.97292 1.01612 1.21131 0.94333 0.97984 1.00055 1.21124 0.99769 0.92519 1.01584 1.20981 0.93569 0.98286 0.97937 1.19419 0.93947 0.92900 1.01975 1.20932 0.92506 0.84969 0.93791 0.90373 1.22729 0.98317 0.93040 0.95636 1.62313 1.39283 1.01099 1.22513 1.22419 0.97944 1.00735 0.85920 1.21222 0.93708 0.97053 0.97951 0.92791 1.21564 0.97494 1.00972 0.97819 1.19117 0.96216 0.96924 0.88662 1.21178 1.26033 1.10239 0.97589 0.92676 1.25008 0.96697 0.95635 0.97116 1.69956 1.44638 1.30796 1.08301 0.86708 0.81679 0.81992 0.77925 1.20258 1.21369 1.20319 1.22285 0.95175 0.93106 0.96142 0.93702 1.21831 1.00699 0.94732 1.03054 1.22691 0.98160 0.84364 0.95260 1.87924 1.43088 1.17252 1.81803 0.90286 0.91474 0.91000 0.85976 0.86257 0.86247 0.85525 0.94244 0.88724 0.90445 0.95394 0.94098 0.93066 0.93824 0.96606 0.97049 0.93055 0.91566 0.92386 0.91593 0.92306 0.88736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 9.46 36.01 0.34 -0.98 16 2 C -0.07 -0.84 5.88 -104.62 -0.62 -1.46 16 3 C -0.12 -1.34 9.70 -39.58 -0.38 -1.72 16 4 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 5 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 6 C -0.09 -1.10 9.35 -39.58 -0.37 -1.47 16 7 C -0.08 -1.05 5.07 -104.62 -0.53 -1.58 16 8 C 0.14 1.77 2.53 -27.83 -0.07 1.70 16 9 H 0.08 1.01 6.15 -51.93 -0.32 0.69 16 10 C 0.03 0.45 4.70 -3.71 -0.02 0.43 16 11 N -0.53 -7.75 3.82 -226.34 -0.86 -8.61 16 12 C 0.06 0.98 4.14 -3.82 -0.02 0.96 16 13 C -0.08 -1.62 2.22 -90.62 -0.20 -1.83 16 14 H 0.05 1.11 6.35 -51.93 -0.33 0.78 16 15 C -0.12 -2.29 8.85 37.16 0.33 -1.97 16 16 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 17 C -0.51 -14.26 8.48 -34.44 -0.29 -14.55 16 18 H 0.06 1.49 7.06 -52.49 -0.37 1.12 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 21 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.04 0.53 2.59 -67.60 -0.17 0.35 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 C -0.15 -1.62 8.92 37.16 0.33 -1.29 16 28 C 0.07 0.81 6.29 37.20 0.23 1.05 16 29 O -0.38 -5.01 9.31 -35.23 -0.33 -5.34 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 32 H 0.07 0.76 6.02 -51.92 -0.31 0.45 16 33 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 34 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 36 H 0.13 1.53 7.35 -52.49 -0.39 1.15 16 37 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 1.47 6.15 -51.92 -0.32 1.15 16 39 H 0.08 1.32 5.79 -51.93 -0.30 1.02 16 40 H 0.03 0.51 8.13 -51.93 -0.42 0.09 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.05 1.03 7.12 -51.93 -0.37 0.66 16 43 H 0.04 0.73 7.54 -51.93 -0.39 0.34 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 46 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.07 0.81 6.18 -51.93 -0.32 0.49 16 50 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 51 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 LS Contribution 391.29 15.07 5.90 5.90 Total: -1.00 -30.27 391.29 -10.93 -41.20 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -8.89 Total: 0.10 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: -2.45 Total: -23.66 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: -0.13 Total: -34.84 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.33 Total: -5.34 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.27 -10.93 -41.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602475167.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.346 kcal (2) G-P(sol) polarization free energy of solvation -30.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds