Wall clock time and date at job start Tue Mar 31 2020 11:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38256 * 119.99453 * 2 1 4 4 C 1.38216 * 120.00043 * 180.24983 * 3 2 1 5 5 C 1.38265 * 119.99498 * 359.79281 * 4 3 2 6 6 C 1.38214 * 120.00095 * 359.95650 * 5 4 3 7 7 C 1.38208 * 120.00360 * 179.76970 * 2 1 3 8 8 C 1.50704 * 119.99967 * 359.97438 * 7 2 1 9 9 H 1.08999 * 109.54086 * 34.61845 * 8 7 2 10 10 C 1.53095 * 109.50781 * 274.50946 * 8 7 2 11 11 N 1.47011 * 109.25793 * 183.21752 * 10 8 7 12 12 C 1.46903 * 110.99889 * 182.39541 * 11 10 8 13 13 C 1.53001 * 109.47072 * 65.53276 * 12 11 10 14 14 H 1.08997 * 109.47346 * 303.04273 * 13 12 11 15 15 C 1.52997 * 109.47486 * 63.04996 * 13 12 11 16 16 C 1.53005 * 109.47054 * 183.04780 * 13 12 11 17 17 C 1.50700 * 109.47307 * 174.99788 * 16 13 12 18 18 H 1.08001 * 119.99657 * 0.02562 * 17 16 13 19 19 C 1.37871 * 120.00091 * 179.97438 * 17 16 13 20 20 N 1.31521 * 120.00113 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00155 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46981 * 60.00282 * 21 19 17 23 23 H 1.48496 * 109.47186 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46935 * 300.00282 * 21 19 17 25 25 C 1.47010 * 110.75211 * 58.61746 * 11 10 8 26 26 H 1.08999 * 109.50907 * 61.31930 * 25 11 10 27 27 C 1.53008 * 109.50404 * 181.40687 * 25 11 10 28 28 C 1.53089 * 109.25851 * 301.38133 * 25 11 10 29 29 O 1.43016 * 109.50410 * 154.72801 * 8 7 2 30 30 H 1.08997 * 109.47362 * 270.22984 * 1 2 3 31 31 H 1.08998 * 109.47628 * 30.23825 * 1 2 3 32 32 H 1.09009 * 109.46522 * 150.22780 * 1 2 3 33 33 H 1.08005 * 120.00612 * 0.02562 * 3 2 1 34 34 H 1.07996 * 120.00552 * 179.76740 * 4 3 2 35 35 H 1.08002 * 119.99466 * 179.97438 * 5 4 3 36 36 H 1.07999 * 120.00003 * 179.97438 * 6 5 4 37 37 H 1.09000 * 109.50721 * 303.15557 * 10 8 7 38 38 H 1.09009 * 109.50405 * 63.23579 * 10 8 7 39 39 H 1.08999 * 109.47047 * 185.52986 * 12 11 10 40 40 H 1.08996 * 109.47237 * 305.53191 * 12 11 10 41 41 H 1.08999 * 109.46896 * 65.53273 * 15 13 12 42 42 H 1.08995 * 109.47294 * 185.53770 * 15 13 12 43 43 H 1.09004 * 109.46766 * 305.54245 * 15 13 12 44 44 H 1.09003 * 109.47095 * 295.00209 * 16 13 12 45 45 H 1.09000 * 109.46756 * 55.00037 * 16 13 12 46 46 H 0.96993 * 119.99682 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.47205 * 60.00074 * 27 25 11 48 48 H 1.09001 * 109.46860 * 180.02562 * 27 25 11 49 49 H 1.09002 * 109.46623 * 299.99936 * 27 25 11 50 50 H 1.08998 * 109.51368 * 296.91760 * 28 25 11 51 51 H 1.09008 * 109.51187 * 176.78349 * 28 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 -0.0052 5 6 4.2717 0.0002 -0.0061 6 6 3.5807 -1.1968 -0.0009 7 6 2.1981 -1.1969 0.0048 8 6 1.4447 -2.5020 0.0106 9 1 0.5301 -2.3976 -0.5730 10 6 1.0914 -2.8820 1.4510 11 7 0.4251 -4.1924 1.4573 12 6 0.0177 -4.5693 2.8174 13 6 -1.0565 -3.6000 3.3151 14 1 -0.6737 -2.5804 3.2725 15 6 -2.2983 -3.7160 2.4289 16 6 -1.4263 -3.9460 4.7589 17 6 -2.3925 -2.9187 5.2900 18 1 -2.7113 -2.1010 4.6605 19 6 -2.8703 -3.0232 6.5790 20 7 -2.4824 -4.0192 7.3454 21 14 -4.0685 -1.7502 7.2372 22 1 -5.2947 -1.7450 6.3995 23 1 -4.4282 -2.0867 8.6381 24 1 -3.4357 -0.4074 7.1969 25 6 1.2919 -5.2203 0.8630 26 1 2.2059 -5.3097 1.4502 27 6 0.5584 -6.5631 0.8521 28 6 1.6432 -4.8170 -0.5714 29 8 2.2615 -3.5275 -0.5609 30 1 -0.3634 0.0041 1.0276 31 1 -0.3634 0.8878 -0.5175 32 1 -0.3633 -0.8921 -0.5103 33 1 1.6582 2.1328 0.0004 34 1 4.1203 2.1328 -0.0090 35 1 5.3517 0.0003 -0.0106 36 1 4.1207 -2.1321 -0.0020 37 1 2.0022 -2.9338 2.0476 38 1 0.4229 -2.1309 1.8720 39 1 -0.3834 -5.5828 2.8089 40 1 0.8815 -4.5259 3.4806 41 1 -2.7379 -4.7063 2.5474 42 1 -3.0253 -2.9583 2.7211 43 1 -2.0161 -3.5662 1.3867 44 1 -1.8909 -4.9316 4.7887 45 1 -0.5260 -3.9500 5.3734 46 1 -2.8183 -4.0925 8.2524 47 1 -0.3546 -6.4736 0.2635 48 1 1.2017 -7.3249 0.4118 49 1 0.3058 -6.8474 1.8736 50 1 0.7344 -4.7799 -1.1721 51 1 2.3317 -5.5473 -0.9967 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602475167.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:41 Heat of formation + Delta-G solvation = -48.150707 kcal Electronic energy + Delta-G solvation = -27715.944061 eV Core-core repulsion = 24192.769464 eV Total energy + Delta-G solvation = -3523.174597 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.40771 -39.92478 -38.01014 -35.96359 -34.62352 -34.05012 -33.22604 -31.72402 -29.39632 -28.50115 -28.06980 -27.35026 -26.19350 -24.44060 -24.22321 -22.73912 -21.56394 -21.09366 -20.52598 -18.53364 -17.77783 -17.59772 -17.06902 -16.52502 -16.39534 -16.07531 -15.97934 -15.50745 -15.33097 -15.17928 -14.96006 -14.56598 -14.32329 -14.05686 -13.99438 -13.94670 -13.42741 -13.28795 -13.16926 -13.07096 -12.86392 -12.81504 -12.75525 -12.61152 -12.48903 -12.20551 -12.15718 -12.00154 -11.99100 -11.79124 -11.36558 -11.35239 -11.05819 -10.96689 -10.59078 -10.52753 -9.69123 -9.50507 -9.36701 -8.17447 -6.26676 0.38748 0.49573 1.39775 1.42423 1.50013 2.41494 2.63380 2.74279 2.91051 3.16100 3.74275 3.79032 3.87807 3.93516 4.00414 4.08598 4.13170 4.18722 4.22752 4.30356 4.38250 4.45844 4.49323 4.51495 4.64134 4.69638 4.73839 4.77053 4.82625 4.85597 4.86327 4.89612 4.91761 4.97533 5.02817 5.08279 5.16629 5.26879 5.31605 5.34595 5.46803 5.49719 5.54492 5.55505 5.62353 5.70644 5.78386 5.87644 5.96949 6.05152 6.11335 6.21463 6.30533 6.88756 7.41679 8.94530 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011408 B = 0.003813 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.850809 B = 7341.352911 C = 9053.690718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.084 4.084 3 C -0.130 4.130 4 C -0.118 4.118 5 C -0.137 4.137 6 C -0.106 4.106 7 C -0.102 4.102 8 C 0.146 3.854 9 H 0.081 0.919 10 C 0.036 3.964 11 N -0.523 5.523 12 C 0.069 3.931 13 C -0.071 4.071 14 H 0.048 0.952 15 C -0.109 4.109 16 C 0.035 3.965 17 C -0.528 4.528 18 H 0.061 0.939 19 C -0.001 4.001 20 N -0.936 5.936 21 Si 0.959 3.041 22 H -0.266 1.266 23 H -0.285 1.285 24 H -0.268 1.268 25 C 0.039 3.961 26 H 0.034 0.966 27 C -0.141 4.141 28 C 0.073 3.927 29 O -0.391 6.391 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.122 0.878 37 H 0.021 0.979 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.011 0.989 41 H 0.036 0.964 42 H 0.037 0.963 43 H 0.068 0.932 44 H -0.008 1.008 45 H -0.020 1.020 46 H 0.262 0.738 47 H 0.068 0.932 48 H 0.084 0.916 49 H 0.050 0.950 50 H 0.067 0.933 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.923 4.494 -20.040 23.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.084 4.084 3 C -0.148 4.148 4 C -0.136 4.136 5 C -0.154 4.154 6 C -0.124 4.124 7 C -0.103 4.103 8 C 0.088 3.912 9 H 0.099 0.901 10 C -0.092 4.092 11 N -0.248 5.248 12 C -0.059 4.059 13 C -0.089 4.089 14 H 0.067 0.933 15 C -0.166 4.166 16 C -0.003 4.003 17 C -0.566 4.566 18 H 0.079 0.921 19 C -0.198 4.198 20 N -0.576 5.576 21 Si 0.784 3.216 22 H -0.191 1.191 23 H -0.211 1.211 24 H -0.193 1.193 25 C -0.069 4.069 26 H 0.052 0.948 27 C -0.198 4.198 28 C -0.004 4.004 29 O -0.310 6.310 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.160 0.840 34 H 0.164 0.836 35 H 0.158 0.842 36 H 0.140 0.860 37 H 0.040 0.960 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.029 0.971 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.087 0.913 44 H 0.010 0.990 45 H -0.002 1.002 46 H 0.070 0.930 47 H 0.088 0.912 48 H 0.103 0.897 49 H 0.069 0.931 50 H 0.085 0.915 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.658 4.471 -20.243 23.310 hybrid contribution 0.009 0.128 1.828 1.833 sum 10.667 4.599 -18.415 21.773 Atomic orbital electron populations 1.20932 0.90322 1.03794 1.02746 1.19922 0.96872 0.92440 0.99158 1.21307 0.94822 0.97700 1.00966 1.21497 0.94371 0.98911 0.98794 1.21418 1.00966 0.92192 1.00867 1.21085 0.93604 0.98895 0.98794 1.19529 0.94371 0.93064 1.03310 1.20794 0.92748 0.85340 0.92269 0.90100 1.22672 0.97075 0.92654 0.96842 1.62299 1.40210 1.01863 1.20391 1.22140 0.96418 1.00046 0.87249 1.21010 0.95387 0.97410 0.95131 0.93315 1.21440 0.96206 1.00233 0.98756 1.18994 0.94284 0.95380 0.91604 1.21580 1.26271 1.10707 0.98040 0.92100 1.25930 0.98610 0.97752 0.97495 1.70097 1.46072 1.32788 1.08689 0.85592 0.79445 0.79334 0.77264 1.19051 1.21050 1.19341 1.22426 0.94477 0.93221 0.96781 0.94765 1.21805 1.01220 0.94397 1.02403 1.22857 0.99246 0.84136 0.94149 1.87927 1.43542 1.17899 1.81594 0.91353 0.89673 0.91162 0.83979 0.83594 0.84181 0.86006 0.96024 0.89955 0.90044 0.97084 0.94492 0.94356 0.91343 0.98973 1.00159 0.92964 0.91247 0.89744 0.93117 0.91504 0.86088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.48 9.46 71.24 0.67 -1.81 16 2 C -0.08 -1.93 5.88 -19.87 -0.12 -2.04 16 3 C -0.13 -2.59 9.70 22.27 0.22 -2.38 16 4 C -0.12 -2.18 10.05 22.27 0.22 -1.95 16 5 C -0.14 -2.75 10.05 22.27 0.22 -2.52 16 6 C -0.11 -2.56 9.35 22.27 0.21 -2.35 16 7 C -0.10 -2.59 5.07 -19.87 -0.10 -2.69 16 8 C 0.15 3.77 2.53 29.88 0.08 3.84 16 9 H 0.08 2.03 6.15 -2.39 -0.01 2.01 16 10 C 0.04 1.07 4.70 86.31 0.41 1.47 16 11 N -0.52 -15.30 3.82 -870.02 -3.32 -18.63 16 12 C 0.07 2.44 4.14 86.30 0.36 2.80 16 13 C -0.07 -2.92 2.22 -10.79 -0.02 -2.94 16 14 H 0.05 2.07 6.35 -2.39 -0.02 2.05 16 15 C -0.11 -4.10 8.85 71.98 0.64 -3.47 16 16 C 0.03 1.86 4.45 29.85 0.13 1.99 16 17 C -0.53 -29.98 8.48 25.60 0.22 -29.76 16 18 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16 19 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 20 N -0.94 -57.56 13.29 21.45 0.28 -57.27 16 21 Si 0.96 44.57 29.54 68.60 2.03 46.60 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 23 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 25 C 0.04 0.96 2.59 44.93 0.12 1.07 16 26 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 27 C -0.14 -2.92 8.92 71.98 0.64 -2.27 16 28 C 0.07 1.50 6.29 72.01 0.45 1.95 16 29 O -0.39 -9.87 9.31 -148.98 -1.39 -11.25 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 1.38 8.09 -2.39 -0.02 1.36 16 32 H 0.07 1.43 6.02 -2.38 -0.01 1.41 16 33 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 34 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 35 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 36 H 0.12 2.96 7.35 -2.91 -0.02 2.93 16 37 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.08 2.63 6.15 -2.38 -0.01 2.61 16 39 H 0.08 2.83 5.79 -2.39 -0.01 2.81 16 40 H 0.01 0.42 8.13 -2.39 -0.02 0.40 16 41 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.04 1.52 7.12 -2.39 -0.02 1.50 16 43 H 0.07 2.22 7.54 -2.39 -0.02 2.20 16 44 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 45 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 46 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 47 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.05 1.21 6.18 -2.39 -0.01 1.19 16 50 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 51 H 0.12 1.87 8.14 -2.38 -0.02 1.85 16 Total: -1.00 -66.28 391.29 3.29 -63.00 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.88 Total: 18.19 kcal Atomic # 6 Polarization: -45.43 SS G_CDS: 4.80 Total: -40.63 kcal Atomic # 7 Polarization: -72.86 SS G_CDS: -3.04 Total: -75.90 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -1.39 Total: -11.25 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -66.28 3.29 -63.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602475167.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.844 kcal (2) G-P(sol) polarization free energy of solvation -66.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds