Wall clock time and date at job start Tue Mar 31 2020 11:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38232 * 120.00250 * 2 1 4 4 C 1.38234 * 119.99796 * 179.97438 * 3 2 1 5 5 C 1.38224 * 120.00201 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00077 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.49207 * 340.02697 * 6 5 4 8 8 O 1.42905 * 109.48261 * 219.99728 * 6 5 4 9 9 C 1.42905 * 114.09831 * 178.85627 * 8 6 5 10 10 C 1.53092 * 109.41215 * 61.16158 * 9 8 6 11 11 C 1.53175 * 109.16344 * 302.38824 * 10 9 8 12 12 C 1.53098 * 109.48082 * 100.05751 * 6 5 4 13 13 H 1.08998 * 109.51931 * 297.49559 * 12 6 5 14 14 N 1.46900 * 109.52193 * 57.68625 * 12 6 5 15 15 C 1.46901 * 110.99665 * 204.68569 * 14 12 6 16 16 C 1.53004 * 109.47054 * 180.02562 * 15 14 12 17 17 H 1.09005 * 109.46958 * 55.00028 * 16 15 14 18 18 C 1.53005 * 109.47072 * 295.00092 * 16 15 14 19 19 C 1.52995 * 109.46959 * 174.99874 * 16 15 14 20 20 C 1.50704 * 109.46557 * 184.99732 * 19 16 15 21 21 H 1.07993 * 120.00493 * 0.02562 * 20 19 16 22 22 C 1.37882 * 119.99616 * 180.02562 * 20 19 16 23 23 N 1.31516 * 120.00073 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99975 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47157 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47272 * 119.99786 * 24 22 20 27 27 H 1.48495 * 109.47055 * 239.99984 * 24 22 20 28 28 C 1.38235 * 120.00154 * 0.27556 * 5 4 3 29 29 C 1.38237 * 120.00119 * 359.53639 * 28 5 4 30 30 H 1.08999 * 109.46626 * 89.99624 * 1 2 3 31 31 H 1.08998 * 109.47106 * 210.00255 * 1 2 3 32 32 H 1.09004 * 109.46969 * 330.00156 * 1 2 3 33 33 H 1.08000 * 119.99880 * 359.97438 * 3 2 1 34 34 H 1.08006 * 119.99254 * 179.97438 * 4 3 2 35 35 H 1.08997 * 109.47832 * 181.14188 * 9 8 6 36 36 H 1.09000 * 109.48236 * 301.17758 * 9 8 6 37 37 H 1.09004 * 109.52333 * 62.30039 * 10 9 8 38 38 H 1.08998 * 109.51897 * 182.48203 * 10 9 8 39 39 H 1.09005 * 109.54265 * 176.84854 * 11 10 9 40 40 H 1.08996 * 109.54473 * 297.02360 * 11 10 9 41 41 H 1.00891 * 111.00181 * 328.63913 * 14 12 6 42 42 H 1.09004 * 109.47054 * 299.99658 * 15 14 12 43 43 H 1.08998 * 109.47424 * 59.99779 * 15 14 12 44 44 H 1.08991 * 109.47160 * 179.97438 * 18 16 15 45 45 H 1.08998 * 109.46777 * 299.99922 * 18 16 15 46 46 H 1.09004 * 109.46948 * 59.99825 * 18 16 15 47 47 H 1.08995 * 109.47673 * 304.99628 * 19 16 15 48 48 H 1.08998 * 109.46801 * 65.00491 * 19 16 15 49 49 H 0.96999 * 119.99760 * 180.02562 * 23 22 20 50 50 H 1.08001 * 119.99890 * 179.72901 * 28 5 4 51 51 H 1.07991 * 120.00399 * 180.23055 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 5.7787 -0.0002 0.0028 7 1 6.1427 0.9654 -0.3484 8 8 6.2559 -1.0327 -0.8623 9 6 7.6802 -1.1042 -0.9551 10 6 8.2659 -1.4000 0.4280 11 6 7.8187 -0.3101 1.4070 12 6 6.2881 -0.2516 1.4244 13 1 5.9620 0.5584 2.0768 14 7 5.7536 -1.5275 1.9190 15 6 5.7063 -1.5446 3.3871 16 6 5.1461 -2.8863 3.8636 17 1 5.7362 -3.6981 3.4382 18 6 3.6911 -3.0215 3.4101 19 6 5.2127 -2.9533 5.3907 20 6 4.7762 -4.3196 5.8530 21 1 4.4813 -5.0657 5.1300 22 6 4.7535 -4.6172 7.1991 23 7 5.1131 -3.7089 8.0795 24 14 4.2131 -6.3110 7.7722 25 1 3.8634 -7.1441 6.5937 26 1 5.3202 -6.9562 8.5227 27 1 3.0268 -6.1796 8.6556 28 6 3.5805 -1.1972 -0.0036 29 6 2.1981 -1.1973 -0.0002 30 1 -0.3632 0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6583 2.1324 -0.0004 34 1 4.1206 2.1324 0.0001 35 1 7.9599 -1.8995 -1.6460 36 1 8.0690 -0.1531 -1.3188 37 1 7.9094 -2.3699 0.7748 38 1 9.3542 -1.4113 0.3678 39 1 8.1860 -0.5445 2.4062 40 1 8.2182 0.6526 1.0883 41 1 4.8437 -1.7150 1.5257 42 1 6.7122 -1.4096 3.7846 43 1 5.0649 -0.7369 3.7395 44 1 3.2922 -3.9774 3.7492 45 1 3.1011 -2.2097 3.8355 46 1 3.6437 -2.9737 2.3222 47 1 6.2358 -2.7686 5.7183 48 1 4.5527 -2.1976 5.8166 49 1 5.0974 -3.9184 9.0265 50 1 4.1205 -2.1325 -0.0072 51 1 1.6581 -2.1325 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602572759.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:20 Heat of formation + Delta-G solvation = -44.139642 kcal Electronic energy + Delta-G solvation = -27646.126583 eV Core-core repulsion = 24123.125919 eV Total energy + Delta-G solvation = -3523.000664 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.44914 -38.72702 -36.59357 -34.32201 -33.72163 -32.47335 -31.46003 -30.97830 -29.48683 -27.10701 -26.65897 -25.37528 -24.35871 -23.21289 -22.78587 -22.03918 -20.86255 -19.41597 -18.92960 -16.94566 -16.56595 -16.30626 -15.87074 -15.54915 -15.24934 -14.67074 -14.57715 -14.36892 -14.12717 -13.93761 -13.70392 -13.56655 -13.18455 -12.88017 -12.71457 -12.48360 -12.34472 -12.32374 -12.10478 -11.83088 -11.69394 -11.47312 -11.33027 -11.12586 -10.91212 -10.85565 -10.77871 -10.61781 -10.38910 -10.30119 -10.07389 -9.66783 -9.50785 -9.09332 -8.97208 -8.90733 -8.56192 -8.30299 -7.99913 -5.94849 -3.95602 1.19351 1.34150 3.33794 3.41332 3.45612 3.51376 3.80886 4.44663 4.52888 4.60968 4.71966 4.76555 4.83146 4.95929 4.98650 5.03896 5.13118 5.19352 5.35943 5.39259 5.40804 5.41195 5.45347 5.55431 5.64816 5.68627 5.69711 5.81957 5.86118 5.90844 5.97014 5.99945 6.04842 6.11202 6.18234 6.33274 6.34629 6.43014 6.49675 6.52821 6.55587 6.63309 6.92392 7.00811 7.15556 7.18919 7.23084 7.47865 7.73569 7.80370 7.91085 8.05948 8.50178 9.11035 9.67644 11.16761 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011191 B = 0.003751 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.404531 B = 7462.587747 C = 9210.925384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.084 4.084 3 C -0.122 4.122 4 C -0.107 4.107 5 C -0.092 4.092 6 C 0.133 3.867 7 H 0.067 0.933 8 O -0.365 6.365 9 C 0.066 3.934 10 C -0.148 4.148 11 C -0.109 4.109 12 C 0.061 3.939 13 H 0.049 0.951 14 N -0.680 5.680 15 C 0.064 3.936 16 C -0.082 4.082 17 H 0.064 0.936 18 C -0.132 4.132 19 C 0.028 3.972 20 C -0.510 4.510 21 H 0.057 0.943 22 C 0.055 3.945 23 N -0.897 5.897 24 Si 0.888 3.112 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.285 1.285 28 C -0.091 4.091 29 C -0.118 4.118 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.091 0.909 36 H 0.042 0.958 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.345 0.655 42 H 0.065 0.935 43 H 0.020 0.980 44 H 0.062 0.938 45 H 0.039 0.961 46 H 0.030 0.970 47 H 0.014 0.986 48 H 0.013 0.987 49 H 0.258 0.742 50 H 0.136 0.864 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.271 11.256 -20.206 23.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.084 4.084 3 C -0.140 4.140 4 C -0.125 4.125 5 C -0.092 4.092 6 C 0.075 3.925 7 H 0.084 0.916 8 O -0.284 6.284 9 C -0.011 4.011 10 C -0.185 4.185 11 C -0.147 4.147 12 C -0.050 4.050 13 H 0.067 0.933 14 N -0.317 5.317 15 C -0.065 4.065 16 C -0.101 4.101 17 H 0.083 0.917 18 C -0.190 4.190 19 C -0.009 4.009 20 C -0.549 4.549 21 H 0.075 0.925 22 C -0.146 4.146 23 N -0.537 5.537 24 Si 0.717 3.283 25 H -0.197 1.197 26 H -0.211 1.211 27 H -0.211 1.211 28 C -0.110 4.110 29 C -0.136 4.136 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.109 0.891 36 H 0.060 0.940 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.170 0.830 42 H 0.083 0.917 43 H 0.038 0.962 44 H 0.081 0.919 45 H 0.059 0.941 46 H 0.049 0.951 47 H 0.033 0.967 48 H 0.032 0.968 49 H 0.068 0.932 50 H 0.154 0.846 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.791 10.832 -20.160 22.899 hybrid contribution -0.731 -0.056 0.925 1.181 sum -1.522 10.776 -19.234 22.100 Atomic orbital electron populations 1.20807 0.91232 1.02978 1.02179 1.19964 0.96122 0.93235 0.99086 1.20936 0.93840 0.97570 1.01692 1.20890 0.94291 0.97071 1.00254 1.19575 0.93721 0.93804 1.02090 1.20970 0.90216 0.91231 0.90113 0.91561 1.87941 1.21134 1.54245 1.65062 1.22543 0.80829 1.00636 0.97101 1.22053 0.99739 1.01498 0.95239 1.21571 0.94342 0.98134 1.00678 1.22054 0.95772 0.92663 0.94533 0.93296 1.60723 1.32215 1.30521 1.08261 1.22180 1.00111 0.98210 0.85956 1.21198 0.95011 0.94565 0.99359 0.91720 1.21734 0.97381 1.02126 0.97742 1.19105 0.96954 0.96962 0.87892 1.21282 1.43676 0.98289 0.91618 0.92522 1.25019 0.95668 0.96836 0.97032 1.69980 1.48782 1.33606 1.01351 0.86589 0.78236 0.84776 0.78732 1.19737 1.21109 1.21146 1.21092 0.93960 0.98239 0.97662 1.21114 0.94164 0.97736 1.00592 0.91256 0.91301 0.91596 0.86071 0.86160 0.89054 0.93951 0.89247 0.91795 0.91019 0.92424 0.82990 0.91691 0.96159 0.91916 0.94141 0.95109 0.96735 0.96837 0.93210 0.84630 0.85749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 10.01 36.01 0.36 -0.61 16 2 C -0.08 -0.92 5.88 -104.62 -0.62 -1.53 16 3 C -0.12 -1.30 9.70 -39.59 -0.38 -1.68 16 4 C -0.11 -1.19 9.67 -39.59 -0.38 -1.57 16 5 C -0.09 -1.15 4.79 -104.63 -0.50 -1.65 16 6 C 0.13 1.62 2.65 -27.83 -0.07 1.54 16 7 H 0.07 0.70 8.00 -51.93 -0.42 0.29 16 8 O -0.37 -4.71 9.63 -35.23 -0.34 -5.04 16 9 C 0.07 0.69 6.84 37.20 0.25 0.94 16 10 C -0.15 -1.67 5.97 -26.59 -0.16 -1.82 16 11 C -0.11 -1.30 5.63 -26.55 -0.15 -1.45 16 12 C 0.06 0.80 2.35 -67.57 -0.16 0.65 16 13 H 0.05 0.67 7.81 -51.93 -0.41 0.27 16 14 N -0.68 -10.60 5.61 -106.57 -0.60 -11.20 16 15 C 0.06 1.17 4.95 -3.82 -0.02 1.15 16 16 C -0.08 -1.74 2.54 -90.62 -0.23 -1.97 16 17 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 18 C -0.13 -2.59 8.77 37.16 0.33 -2.26 16 19 C 0.03 0.74 4.45 -27.88 -0.12 0.62 16 20 C -0.51 -14.46 8.41 -34.44 -0.29 -14.75 16 21 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 22 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 23 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 24 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 25 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 C -0.09 -1.19 7.34 -39.58 -0.29 -1.48 16 29 C -0.12 -1.40 9.70 -39.58 -0.38 -1.79 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 32 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.12 1.09 8.04 -52.48 -0.42 0.66 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 1.22 7.76 -51.93 -0.40 0.82 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.94 7.40 -51.93 -0.38 0.55 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.34 5.33 2.55 -39.30 -0.10 5.23 16 42 H 0.06 1.20 7.40 -51.93 -0.38 0.82 16 43 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 44 H 0.06 1.30 6.95 -51.93 -0.36 0.94 16 45 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.03 0.52 6.68 -51.93 -0.35 0.17 16 47 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 50 H 0.14 1.87 6.78 -52.49 -0.36 1.51 16 51 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 392.86 15.07 5.92 5.92 Total: -1.00 -30.96 392.86 -11.21 -42.17 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -8.99 Total: 3.97 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: -2.92 Total: -26.19 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.14 Total: -37.71 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.34 Total: -5.04 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.96 -11.21 -42.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602572759.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.972 kcal (2) G-P(sol) polarization free energy of solvation -30.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds