Wall clock time and date at job start Tue Mar 31 2020 11:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38232 * 120.00250 * 2 1 4 4 C 1.38234 * 119.99796 * 179.97438 * 3 2 1 5 5 C 1.38224 * 120.00201 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00077 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.49207 * 340.02697 * 6 5 4 8 8 O 1.42905 * 109.48261 * 219.99728 * 6 5 4 9 9 C 1.42905 * 114.09831 * 178.85627 * 8 6 5 10 10 C 1.53092 * 109.41215 * 61.16158 * 9 8 6 11 11 C 1.53175 * 109.16344 * 302.38824 * 10 9 8 12 12 C 1.53098 * 109.48082 * 100.05751 * 6 5 4 13 13 H 1.08998 * 109.51931 * 297.49559 * 12 6 5 14 14 N 1.46900 * 109.52193 * 57.68625 * 12 6 5 15 15 C 1.46901 * 110.99665 * 204.68569 * 14 12 6 16 16 C 1.53004 * 109.47054 * 180.02562 * 15 14 12 17 17 H 1.09005 * 109.46958 * 55.00028 * 16 15 14 18 18 C 1.53005 * 109.47072 * 295.00092 * 16 15 14 19 19 C 1.52995 * 109.46959 * 174.99874 * 16 15 14 20 20 C 1.50704 * 109.46557 * 184.99732 * 19 16 15 21 21 H 1.07993 * 120.00493 * 0.02562 * 20 19 16 22 22 C 1.37882 * 119.99616 * 180.02562 * 20 19 16 23 23 N 1.31516 * 120.00073 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99975 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47157 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47272 * 119.99786 * 24 22 20 27 27 H 1.48495 * 109.47055 * 239.99984 * 24 22 20 28 28 C 1.38235 * 120.00154 * 0.27556 * 5 4 3 29 29 C 1.38237 * 120.00119 * 359.53639 * 28 5 4 30 30 H 1.08999 * 109.46626 * 89.99624 * 1 2 3 31 31 H 1.08998 * 109.47106 * 210.00255 * 1 2 3 32 32 H 1.09004 * 109.46969 * 330.00156 * 1 2 3 33 33 H 1.08000 * 119.99880 * 359.97438 * 3 2 1 34 34 H 1.08006 * 119.99254 * 179.97438 * 4 3 2 35 35 H 1.08997 * 109.47832 * 181.14188 * 9 8 6 36 36 H 1.09000 * 109.48236 * 301.17758 * 9 8 6 37 37 H 1.09004 * 109.52333 * 62.30039 * 10 9 8 38 38 H 1.08998 * 109.51897 * 182.48203 * 10 9 8 39 39 H 1.09005 * 109.54265 * 176.84854 * 11 10 9 40 40 H 1.08996 * 109.54473 * 297.02360 * 11 10 9 41 41 H 1.00891 * 111.00181 * 328.63913 * 14 12 6 42 42 H 1.09004 * 109.47054 * 299.99658 * 15 14 12 43 43 H 1.08998 * 109.47424 * 59.99779 * 15 14 12 44 44 H 1.08991 * 109.47160 * 179.97438 * 18 16 15 45 45 H 1.08998 * 109.46777 * 299.99922 * 18 16 15 46 46 H 1.09004 * 109.46948 * 59.99825 * 18 16 15 47 47 H 1.08995 * 109.47673 * 304.99628 * 19 16 15 48 48 H 1.08998 * 109.46801 * 65.00491 * 19 16 15 49 49 H 0.96999 * 119.99760 * 180.02562 * 23 22 20 50 50 H 1.08001 * 119.99890 * 179.72901 * 28 5 4 51 51 H 1.07991 * 120.00399 * 180.23055 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 5.7787 -0.0002 0.0028 7 1 6.1427 0.9654 -0.3484 8 8 6.2559 -1.0327 -0.8623 9 6 7.6802 -1.1042 -0.9551 10 6 8.2659 -1.4000 0.4280 11 6 7.8187 -0.3101 1.4070 12 6 6.2881 -0.2516 1.4244 13 1 5.9620 0.5584 2.0768 14 7 5.7536 -1.5275 1.9190 15 6 5.7063 -1.5446 3.3871 16 6 5.1461 -2.8863 3.8636 17 1 5.7362 -3.6981 3.4382 18 6 3.6911 -3.0215 3.4101 19 6 5.2127 -2.9533 5.3907 20 6 4.7762 -4.3196 5.8530 21 1 4.4813 -5.0657 5.1300 22 6 4.7535 -4.6172 7.1991 23 7 5.1131 -3.7089 8.0795 24 14 4.2131 -6.3110 7.7722 25 1 3.8634 -7.1441 6.5937 26 1 5.3202 -6.9562 8.5227 27 1 3.0268 -6.1796 8.6556 28 6 3.5805 -1.1972 -0.0036 29 6 2.1981 -1.1973 -0.0002 30 1 -0.3632 0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6583 2.1324 -0.0004 34 1 4.1206 2.1324 0.0001 35 1 7.9599 -1.8995 -1.6460 36 1 8.0690 -0.1531 -1.3188 37 1 7.9094 -2.3699 0.7748 38 1 9.3542 -1.4113 0.3678 39 1 8.1860 -0.5445 2.4062 40 1 8.2182 0.6526 1.0883 41 1 4.8437 -1.7150 1.5257 42 1 6.7122 -1.4096 3.7846 43 1 5.0649 -0.7369 3.7395 44 1 3.2922 -3.9774 3.7492 45 1 3.1011 -2.2097 3.8355 46 1 3.6437 -2.9737 2.3222 47 1 6.2358 -2.7686 5.7183 48 1 4.5527 -2.1976 5.8166 49 1 5.0974 -3.9184 9.0265 50 1 4.1205 -2.1325 -0.0072 51 1 1.6581 -2.1325 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602572759.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:19 Heat of formation + Delta-G solvation = -60.168691 kcal Electronic energy + Delta-G solvation = -27646.821655 eV Core-core repulsion = 24123.125919 eV Total energy + Delta-G solvation = -3523.695736 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.38979 -39.60338 -38.10419 -35.80193 -34.57447 -34.28746 -32.67169 -31.84512 -30.65282 -28.75566 -27.80527 -26.92278 -25.36882 -24.41040 -24.09149 -23.20630 -21.73247 -20.71763 -20.39948 -18.55310 -17.83793 -17.43452 -17.03158 -16.57536 -16.54088 -16.08718 -15.74313 -15.44341 -15.27266 -15.16250 -14.72874 -14.54166 -14.38104 -14.25116 -13.98388 -13.81173 -13.59841 -13.36708 -13.20573 -13.15221 -12.99634 -12.77556 -12.66662 -12.63144 -12.30237 -12.26168 -12.01161 -11.90945 -11.78166 -11.66863 -11.46900 -11.22490 -11.10982 -10.95197 -10.54761 -10.36872 -9.85041 -9.43006 -9.26977 -8.18000 -6.27161 0.33286 0.47473 1.39286 1.39737 1.52994 2.41557 2.64133 2.93894 3.15409 3.31091 3.68200 3.77562 3.91725 4.03972 4.10213 4.13964 4.14955 4.17093 4.22740 4.28219 4.36249 4.43031 4.49673 4.57318 4.58758 4.68401 4.74121 4.77034 4.84391 4.84627 4.85616 4.93228 4.98516 4.98994 5.10126 5.17744 5.20665 5.23553 5.29141 5.34570 5.42791 5.47971 5.49742 5.54790 5.62255 5.70086 5.77556 5.87488 6.08823 6.09853 6.29879 6.35672 6.55661 6.88313 7.41080 8.94392 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011191 B = 0.003751 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.404531 B = 7462.587747 C = 9210.925384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.127 4.127 4 C -0.112 4.112 5 C -0.108 4.108 6 C 0.138 3.862 7 H 0.088 0.912 8 O -0.383 6.383 9 C 0.063 3.937 10 C -0.144 4.144 11 C -0.109 4.109 12 C 0.057 3.943 13 H 0.045 0.955 14 N -0.679 5.679 15 C 0.079 3.921 16 C -0.073 4.073 17 H 0.055 0.945 18 C -0.122 4.122 19 C 0.036 3.964 20 C -0.528 4.528 21 H 0.060 0.940 22 C -0.001 4.001 23 N -0.935 5.935 24 Si 0.961 3.039 25 H -0.262 1.262 26 H -0.279 1.279 27 H -0.279 1.279 28 C -0.108 4.108 29 C -0.133 4.133 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.083 0.917 41 H 0.346 0.654 42 H 0.057 0.943 43 H 0.013 0.987 44 H 0.048 0.952 45 H 0.036 0.964 46 H 0.057 0.943 47 H -0.013 1.013 48 H -0.012 1.012 49 H 0.262 0.738 50 H 0.121 0.879 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.827 11.828 -21.825 24.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.145 4.145 4 C -0.129 4.129 5 C -0.108 4.108 6 C 0.080 3.920 7 H 0.106 0.894 8 O -0.302 6.302 9 C -0.013 4.013 10 C -0.182 4.182 11 C -0.147 4.147 12 C -0.053 4.053 13 H 0.063 0.937 14 N -0.317 5.317 15 C -0.050 4.050 16 C -0.092 4.092 17 H 0.074 0.926 18 C -0.179 4.179 19 C -0.002 4.002 20 C -0.566 4.566 21 H 0.078 0.922 22 C -0.198 4.198 23 N -0.576 5.576 24 Si 0.786 3.214 25 H -0.186 1.186 26 H -0.205 1.205 27 H -0.204 1.204 28 C -0.126 4.126 29 C -0.151 4.151 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.163 0.837 34 H 0.160 0.840 35 H 0.120 0.880 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.172 0.828 42 H 0.075 0.925 43 H 0.032 0.968 44 H 0.067 0.933 45 H 0.055 0.945 46 H 0.075 0.925 47 H 0.005 0.995 48 H 0.006 0.994 49 H 0.071 0.929 50 H 0.139 0.861 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.345 11.404 -21.800 24.640 hybrid contribution -0.545 -0.183 1.406 1.519 sum -1.890 11.221 -20.395 23.354 Atomic orbital electron populations 1.20852 0.89508 1.03522 1.03192 1.20306 0.97528 0.93023 0.98242 1.21296 0.93923 0.98481 1.00755 1.21197 0.94799 0.97440 0.99511 1.19743 0.94071 0.94191 1.02834 1.20975 0.90134 0.91969 0.88944 0.89417 1.87931 1.22515 1.54731 1.65061 1.22702 0.79725 1.02264 0.96635 1.22006 1.00895 0.99650 0.95618 1.21598 0.93335 0.99729 1.00073 1.22175 0.96641 0.91074 0.95429 0.93710 1.60682 1.32442 1.32461 1.06091 1.21864 0.99164 0.96070 0.87949 1.20994 0.96355 0.96009 0.95848 0.92609 1.21605 0.95803 1.01143 0.99362 1.18973 0.94407 0.95531 0.91274 1.21645 1.43647 0.99149 0.92127 0.92158 1.25943 0.95590 1.01122 0.97188 1.70111 1.49782 1.35919 1.01799 0.85455 0.77921 0.79596 0.78443 1.18599 1.20499 1.20432 1.21061 0.94516 0.98015 0.99050 1.21303 0.93994 0.98733 1.01057 0.89926 0.91325 0.90506 0.83674 0.84008 0.87970 0.91714 0.92172 0.89927 0.92774 0.89836 0.82801 0.92456 0.96850 0.93268 0.94459 0.92462 0.99499 0.99388 0.92939 0.86132 0.85074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 10.01 71.24 0.71 -0.98 16 2 C -0.09 -1.85 5.88 -19.86 -0.12 -1.97 16 3 C -0.13 -2.41 9.70 22.27 0.22 -2.20 16 4 C -0.11 -2.26 9.67 22.27 0.22 -2.05 16 5 C -0.11 -2.59 4.79 -19.87 -0.10 -2.68 16 6 C 0.14 3.14 2.65 29.88 0.08 3.22 16 7 H 0.09 1.62 8.00 -2.39 -0.02 1.60 16 8 O -0.38 -9.38 9.63 -148.98 -1.43 -10.81 16 9 C 0.06 1.19 6.84 72.01 0.49 1.68 16 10 C -0.14 -3.08 5.97 30.68 0.18 -2.90 16 11 C -0.11 -2.49 5.63 30.71 0.17 -2.31 16 12 C 0.06 1.48 2.35 45.01 0.11 1.58 16 13 H 0.04 1.20 7.81 -2.39 -0.02 1.18 16 14 N -0.68 -21.35 5.61 -491.08 -2.76 -24.10 16 15 C 0.08 2.96 4.95 86.30 0.43 3.38 16 16 C -0.07 -3.18 2.54 -10.79 -0.03 -3.21 16 17 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 18 C -0.12 -4.81 8.77 71.98 0.63 -4.17 16 19 C 0.04 1.95 4.45 29.85 0.13 2.08 16 20 C -0.53 -30.55 8.41 25.60 0.22 -30.34 16 21 H 0.06 3.38 7.06 -2.91 -0.02 3.36 16 22 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 23 N -0.94 -58.01 13.29 21.45 0.28 -57.72 16 24 Si 0.96 45.19 29.54 68.60 2.03 47.22 16 25 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 27 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 28 C -0.11 -2.78 7.34 22.27 0.16 -2.62 16 29 C -0.13 -3.08 9.70 22.27 0.22 -2.87 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 32 H 0.08 0.97 8.09 -2.38 -0.02 0.95 16 33 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 34 H 0.14 2.16 8.04 -2.91 -0.02 2.14 16 35 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 1.65 7.76 -2.39 -0.02 1.63 16 38 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.05 1.41 7.40 -2.38 -0.02 1.40 16 40 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.35 10.75 2.55 -89.70 -0.23 10.53 16 42 H 0.06 2.22 7.40 -2.39 -0.02 2.20 16 43 H 0.01 0.52 8.06 -2.39 -0.02 0.50 16 44 H 0.05 2.05 6.95 -2.39 -0.02 2.03 16 45 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.06 1.94 6.68 -2.38 -0.02 1.92 16 47 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 48 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 49 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 50 H 0.12 3.38 6.78 -2.91 -0.02 3.36 16 51 H 0.13 2.71 8.06 -2.92 -0.02 2.68 16 Total: -1.00 -67.81 392.86 2.96 -64.84 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 0.65 Total: 26.54 kcal Atomic # 6 Polarization: -50.15 SS G_CDS: 4.19 Total: -45.97 kcal Atomic # 7 Polarization: -79.35 SS G_CDS: -2.47 Total: -81.82 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -1.43 Total: -10.81 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -67.81 2.96 -64.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602572759.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.676 kcal (2) G-P(sol) polarization free energy of solvation -67.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds