Wall clock time and date at job start Tue Mar 31 2020 11:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38230 * 120.00221 * 2 1 4 4 C 1.38244 * 119.99771 * 179.97438 * 3 2 1 5 5 C 1.38231 * 120.00047 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99823 * 180.02562 * 5 4 3 7 7 H 1.09005 * 109.48884 * 340.02562 * 6 5 4 8 8 O 1.42905 * 109.48105 * 219.99633 * 6 5 4 9 9 C 1.42905 * 114.09920 * 178.85715 * 8 6 5 10 10 C 1.53093 * 109.41141 * 61.15774 * 9 8 6 11 11 C 1.53174 * 109.16375 * 302.39044 * 10 9 8 12 12 C 1.53096 * 109.48331 * 100.05295 * 6 5 4 13 13 H 1.08993 * 109.51849 * 57.68662 * 12 6 5 14 14 N 1.46902 * 109.52199 * 297.49714 * 12 6 5 15 15 C 1.46900 * 110.99907 * 154.99998 * 14 12 6 16 16 C 1.52996 * 109.46997 * 179.97438 * 15 14 12 17 17 H 1.09003 * 109.46953 * 54.99926 * 16 15 14 18 18 C 1.52994 * 109.47354 * 295.00050 * 16 15 14 19 19 C 1.53006 * 109.47222 * 174.99630 * 16 15 14 20 20 C 1.50696 * 109.47000 * 185.00180 * 19 16 15 21 21 H 1.07991 * 120.00372 * 0.02562 * 20 19 16 22 22 C 1.37880 * 119.99838 * 180.02562 * 20 19 16 23 23 N 1.31513 * 120.00276 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 119.99808 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46770 * 89.99998 * 24 22 20 26 26 H 1.48497 * 109.47355 * 210.00006 * 24 22 20 27 27 H 1.48495 * 109.47203 * 330.00552 * 24 22 20 28 28 C 1.38231 * 120.00079 * 0.26780 * 5 4 3 29 29 C 1.38231 * 120.00129 * 359.54459 * 28 5 4 30 30 H 1.08995 * 109.47321 * 89.99916 * 1 2 3 31 31 H 1.09000 * 109.47445 * 210.00156 * 1 2 3 32 32 H 1.09000 * 109.47441 * 329.99966 * 1 2 3 33 33 H 1.07994 * 120.00097 * 0.02562 * 3 2 1 34 34 H 1.08001 * 119.99240 * 179.97438 * 4 3 2 35 35 H 1.08996 * 109.47867 * 181.14448 * 9 8 6 36 36 H 1.09002 * 109.47579 * 301.17693 * 9 8 6 37 37 H 1.09001 * 109.52010 * 62.29951 * 10 9 8 38 38 H 1.09003 * 109.51713 * 182.42219 * 10 9 8 39 39 H 1.09002 * 109.54277 * 176.85322 * 11 10 9 40 40 H 1.09006 * 109.54594 * 297.02146 * 11 10 9 41 41 H 1.00896 * 111.00036 * 278.95331 * 14 12 6 42 42 H 1.09003 * 109.46952 * 300.00035 * 15 14 12 43 43 H 1.08996 * 109.47018 * 59.99805 * 15 14 12 44 44 H 1.08995 * 109.47147 * 300.00114 * 18 16 15 45 45 H 1.09001 * 109.47389 * 59.99697 * 18 16 15 46 46 H 1.09000 * 109.47300 * 180.02562 * 18 16 15 47 47 H 1.08995 * 109.47195 * 305.00587 * 19 16 15 48 48 H 1.09004 * 109.46506 * 65.00028 * 19 16 15 49 49 H 0.97004 * 119.99812 * 179.97438 * 23 22 20 50 50 H 1.07999 * 120.00135 * 179.73218 * 28 5 4 51 51 H 1.08000 * 120.00605 * 180.22738 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.2716 -0.0002 0.0016 6 6 5.7786 -0.0003 0.0028 7 1 6.1426 0.9654 -0.3484 8 8 6.2558 -1.0328 -0.8623 9 6 7.6801 -1.1044 -0.9551 10 6 8.2659 -1.4000 0.4281 11 6 7.8186 -0.3101 1.4070 12 6 6.2881 -0.2516 1.4244 13 1 5.8916 -1.1982 1.7914 14 7 5.8486 0.8401 2.3036 15 6 5.7770 0.3940 3.7014 16 6 5.3174 1.5557 4.5846 17 1 4.3745 1.9496 4.2052 18 6 6.3758 2.6603 4.5659 19 6 5.1228 1.0600 6.0189 20 6 4.5535 2.1719 6.8618 21 1 4.3504 3.1356 6.4188 22 6 4.2919 1.9589 8.1987 23 7 3.7946 2.9290 8.9342 24 14 4.6426 0.2916 8.9649 25 1 6.0321 0.2700 9.4885 26 1 3.6903 0.0482 10.0780 27 1 4.4844 -0.7685 7.9372 28 6 3.5804 -1.1973 -0.0035 29 6 2.1981 -1.1973 -0.0001 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6582 2.1324 0.0004 34 1 4.1205 2.1323 0.0001 35 1 7.9598 -1.8996 -1.6460 36 1 8.0688 -0.1532 -1.3188 37 1 7.9092 -2.3699 0.7749 38 1 9.3542 -1.4124 0.3676 39 1 8.1860 -0.5444 2.4061 40 1 8.2181 0.6527 1.0882 41 1 6.4513 1.6439 2.2110 42 1 5.0670 -0.4289 3.7842 43 1 6.7617 0.0584 4.0265 44 1 7.3187 2.2665 4.9452 45 1 6.5145 3.0135 3.5441 46 1 6.0486 3.4878 5.1955 47 1 4.4354 0.2141 6.0209 48 1 6.0835 0.7484 6.4291 49 1 3.6103 2.7790 9.8747 50 1 4.1204 -2.1326 -0.0070 51 1 1.6580 -2.1325 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602572761.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:22 Heat of formation + Delta-G solvation = -46.968965 kcal Electronic energy + Delta-G solvation = -27257.301282 eV Core-core repulsion = 23734.177929 eV Total energy + Delta-G solvation = -3523.123353 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.27401 -38.69434 -36.95753 -34.56013 -33.67468 -32.50208 -31.62294 -30.77504 -29.50344 -27.42938 -26.84675 -25.46260 -24.28981 -22.89271 -22.62675 -21.73305 -20.84642 -20.35093 -19.00165 -16.97545 -16.79253 -16.38281 -15.82790 -15.31017 -15.08052 -14.99552 -14.58980 -14.41317 -14.01501 -13.93148 -13.69450 -13.65329 -13.26268 -13.09994 -12.86727 -12.61609 -12.44790 -12.23455 -12.18412 -11.88455 -11.71021 -11.64459 -11.45972 -11.25499 -11.01481 -10.98713 -10.87060 -10.72876 -10.52447 -10.41261 -9.82168 -9.79617 -9.71476 -9.37988 -9.04197 -8.73960 -8.50287 -8.38445 -8.13157 -6.00631 -3.97291 1.44626 1.59129 3.31849 3.39632 3.43667 3.50950 3.89209 4.26371 4.48111 4.61395 4.64664 4.70885 4.87674 4.91428 4.96505 5.03954 5.08091 5.18714 5.24957 5.33017 5.34078 5.46254 5.53401 5.56782 5.59053 5.62194 5.66775 5.69854 5.74597 5.81128 5.84396 5.88966 5.93686 6.03394 6.15929 6.19217 6.22046 6.37301 6.47132 6.53606 6.71177 6.72333 6.75847 6.96848 7.04051 7.07571 7.15514 7.27043 7.34226 7.49600 7.59901 7.84416 8.58973 9.05184 9.62527 11.12840 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.010389 B = 0.003792 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.555718 B = 7381.788486 C = 9112.912251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.088 4.088 3 C -0.122 4.122 4 C -0.082 4.082 5 C -0.063 4.063 6 C 0.144 3.856 7 H 0.064 0.936 8 O -0.375 6.375 9 C 0.061 3.939 10 C -0.152 4.152 11 C -0.154 4.154 12 C 0.066 3.934 13 H 0.084 0.916 14 N -0.674 5.674 15 C 0.066 3.934 16 C -0.074 4.074 17 H 0.072 0.928 18 C -0.135 4.135 19 C -0.008 4.008 20 C -0.512 4.512 21 H 0.074 0.926 22 C 0.065 3.935 23 N -0.905 5.905 24 Si 0.877 3.123 25 H -0.279 1.279 26 H -0.289 1.289 27 H -0.266 1.266 28 C -0.095 4.095 29 C -0.127 4.127 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.093 0.907 36 H 0.049 0.951 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.339 0.661 42 H 0.066 0.934 43 H 0.023 0.977 44 H 0.039 0.961 45 H 0.033 0.967 46 H 0.067 0.933 47 H 0.014 0.986 48 H 0.008 0.992 49 H 0.262 0.738 50 H 0.119 0.881 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.217 -8.092 -22.737 24.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.140 4.140 4 C -0.100 4.100 5 C -0.063 4.063 6 C 0.086 3.914 7 H 0.082 0.918 8 O -0.293 6.293 9 C -0.016 4.016 10 C -0.191 4.191 11 C -0.193 4.193 12 C -0.045 4.045 13 H 0.103 0.897 14 N -0.305 5.305 15 C -0.062 4.062 16 C -0.093 4.093 17 H 0.090 0.910 18 C -0.192 4.192 19 C -0.046 4.046 20 C -0.550 4.550 21 H 0.092 0.908 22 C -0.135 4.135 23 N -0.545 5.545 24 Si 0.705 3.295 25 H -0.205 1.205 26 H -0.215 1.215 27 H -0.191 1.191 28 C -0.113 4.113 29 C -0.145 4.145 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.111 0.889 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.158 0.842 42 H 0.084 0.916 43 H 0.041 0.959 44 H 0.058 0.942 45 H 0.052 0.948 46 H 0.086 0.914 47 H 0.033 0.967 48 H 0.026 0.974 49 H 0.071 0.929 50 H 0.137 0.863 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.349 -8.279 -22.773 24.461 hybrid contribution 1.463 -0.758 1.143 2.005 sum 4.811 -9.037 -21.630 23.930 Atomic orbital electron populations 1.20777 0.91575 1.02811 1.01870 1.19878 0.95844 0.93323 0.99753 1.20938 0.94072 0.97402 1.01588 1.20792 0.93854 0.97192 0.98192 1.19231 0.92807 0.93532 1.00752 1.20787 0.91058 0.90494 0.89058 0.91847 1.87963 1.20704 1.55012 1.65667 1.22562 0.81219 1.01346 0.96428 1.22170 1.01002 0.99821 0.96080 1.22389 0.97366 0.99270 1.00264 1.22150 0.92239 0.96548 0.93600 0.89747 1.60493 1.55997 1.06833 1.07210 1.22153 0.98892 0.98910 0.86270 1.21013 0.98680 0.93688 0.95916 0.91003 1.21741 0.98276 0.99929 0.99247 1.19592 0.96029 0.97131 0.91822 1.21127 1.41454 0.98663 0.93717 0.90838 1.25019 0.94789 0.96423 0.97298 1.69915 1.45102 1.32232 1.07216 0.86820 0.78141 0.85515 0.79046 1.20466 1.21464 1.19098 1.20868 0.93785 0.97744 0.98907 1.20941 0.94134 0.97309 1.02155 0.91552 0.91725 0.91523 0.86251 0.86208 0.88867 0.93249 0.91001 0.90976 0.91181 0.91631 0.84199 0.91598 0.95910 0.94186 0.94776 0.91375 0.96746 0.97362 0.92856 0.86276 0.86564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.01 36.00 0.36 -0.73 16 2 C -0.09 -1.07 5.88 -104.63 -0.62 -1.68 16 3 C -0.12 -1.51 9.70 -39.58 -0.38 -1.90 16 4 C -0.08 -1.05 9.67 -39.58 -0.38 -1.43 16 5 C -0.06 -0.82 4.64 -104.63 -0.49 -1.30 16 6 C 0.14 1.68 2.55 -27.83 -0.07 1.61 16 7 H 0.06 0.71 8.00 -51.93 -0.42 0.29 16 8 O -0.38 -4.32 9.72 -35.23 -0.34 -4.66 16 9 C 0.06 0.53 6.84 37.21 0.25 0.78 16 10 C -0.15 -1.30 6.14 -26.59 -0.16 -1.46 16 11 C -0.15 -1.55 5.28 -26.55 -0.14 -1.69 16 12 C 0.07 0.78 2.07 -67.57 -0.14 0.64 16 13 H 0.08 1.14 7.80 -51.93 -0.41 0.73 16 14 N -0.67 -9.13 5.90 -106.58 -0.63 -9.76 16 15 C 0.07 1.08 4.95 -3.83 -0.02 1.06 16 16 C -0.07 -1.45 2.54 -90.62 -0.23 -1.68 16 17 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 18 C -0.13 -2.42 8.77 37.15 0.33 -2.10 16 19 C -0.01 -0.19 3.52 -27.88 -0.10 -0.29 16 20 C -0.51 -14.49 8.96 -34.44 -0.31 -14.80 16 21 H 0.07 2.23 7.30 -52.49 -0.38 1.85 16 22 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 23 N -0.91 -28.07 13.96 55.43 0.77 -27.30 16 24 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 27 H -0.27 -6.45 6.54 56.52 0.37 -6.09 16 28 C -0.09 -1.23 9.36 -39.59 -0.37 -1.60 16 29 C -0.13 -1.56 9.70 -39.58 -0.38 -1.95 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 32 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 33 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.12 1.38 8.04 -52.49 -0.42 0.96 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.76 7.57 -51.93 -0.39 0.37 16 40 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 41 H 0.34 4.31 6.69 -39.29 -0.26 4.04 16 42 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 43 H 0.02 0.36 7.53 -51.93 -0.39 -0.03 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.03 0.51 6.68 -51.93 -0.35 0.16 16 46 H 0.07 1.40 6.95 -51.93 -0.36 1.03 16 47 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 48 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 49 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 50 H 0.12 1.46 7.77 -52.49 -0.41 1.05 16 51 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 396.70 15.07 5.98 5.98 Total: -1.00 -30.95 396.70 -11.04 -41.99 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -9.20 Total: 3.10 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -2.95 Total: -26.68 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.14 Total: -37.05 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.34 Total: -4.66 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.95 -11.04 -41.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602572761.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.974 kcal (2) G-P(sol) polarization free energy of solvation -30.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds