Wall clock time and date at job start Tue Mar 31 2020 11:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38230 * 120.00221 * 2 1 4 4 C 1.38244 * 119.99771 * 179.97438 * 3 2 1 5 5 C 1.38231 * 120.00047 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99823 * 180.02562 * 5 4 3 7 7 H 1.09005 * 109.48884 * 340.02562 * 6 5 4 8 8 O 1.42905 * 109.48105 * 219.99633 * 6 5 4 9 9 C 1.42905 * 114.09920 * 178.85715 * 8 6 5 10 10 C 1.53093 * 109.41141 * 61.15774 * 9 8 6 11 11 C 1.53174 * 109.16375 * 302.39044 * 10 9 8 12 12 C 1.53096 * 109.48331 * 100.05295 * 6 5 4 13 13 H 1.08993 * 109.51849 * 57.68662 * 12 6 5 14 14 N 1.46902 * 109.52199 * 297.49714 * 12 6 5 15 15 C 1.46900 * 110.99907 * 154.99998 * 14 12 6 16 16 C 1.52996 * 109.46997 * 179.97438 * 15 14 12 17 17 H 1.09003 * 109.46953 * 54.99926 * 16 15 14 18 18 C 1.52994 * 109.47354 * 295.00050 * 16 15 14 19 19 C 1.53006 * 109.47222 * 174.99630 * 16 15 14 20 20 C 1.50696 * 109.47000 * 185.00180 * 19 16 15 21 21 H 1.07991 * 120.00372 * 0.02562 * 20 19 16 22 22 C 1.37880 * 119.99838 * 180.02562 * 20 19 16 23 23 N 1.31513 * 120.00276 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 119.99808 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46770 * 89.99998 * 24 22 20 26 26 H 1.48497 * 109.47355 * 210.00006 * 24 22 20 27 27 H 1.48495 * 109.47203 * 330.00552 * 24 22 20 28 28 C 1.38231 * 120.00079 * 0.26780 * 5 4 3 29 29 C 1.38231 * 120.00129 * 359.54459 * 28 5 4 30 30 H 1.08995 * 109.47321 * 89.99916 * 1 2 3 31 31 H 1.09000 * 109.47445 * 210.00156 * 1 2 3 32 32 H 1.09000 * 109.47441 * 329.99966 * 1 2 3 33 33 H 1.07994 * 120.00097 * 0.02562 * 3 2 1 34 34 H 1.08001 * 119.99240 * 179.97438 * 4 3 2 35 35 H 1.08996 * 109.47867 * 181.14448 * 9 8 6 36 36 H 1.09002 * 109.47579 * 301.17693 * 9 8 6 37 37 H 1.09001 * 109.52010 * 62.29951 * 10 9 8 38 38 H 1.09003 * 109.51713 * 182.42219 * 10 9 8 39 39 H 1.09002 * 109.54277 * 176.85322 * 11 10 9 40 40 H 1.09006 * 109.54594 * 297.02146 * 11 10 9 41 41 H 1.00896 * 111.00036 * 278.95331 * 14 12 6 42 42 H 1.09003 * 109.46952 * 300.00035 * 15 14 12 43 43 H 1.08996 * 109.47018 * 59.99805 * 15 14 12 44 44 H 1.08995 * 109.47147 * 300.00114 * 18 16 15 45 45 H 1.09001 * 109.47389 * 59.99697 * 18 16 15 46 46 H 1.09000 * 109.47300 * 180.02562 * 18 16 15 47 47 H 1.08995 * 109.47195 * 305.00587 * 19 16 15 48 48 H 1.09004 * 109.46506 * 65.00028 * 19 16 15 49 49 H 0.97004 * 119.99812 * 179.97438 * 23 22 20 50 50 H 1.07999 * 120.00135 * 179.73218 * 28 5 4 51 51 H 1.08000 * 120.00605 * 180.22738 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.2716 -0.0002 0.0016 6 6 5.7786 -0.0003 0.0028 7 1 6.1426 0.9654 -0.3484 8 8 6.2558 -1.0328 -0.8623 9 6 7.6801 -1.1044 -0.9551 10 6 8.2659 -1.4000 0.4281 11 6 7.8186 -0.3101 1.4070 12 6 6.2881 -0.2516 1.4244 13 1 5.8916 -1.1982 1.7914 14 7 5.8486 0.8401 2.3036 15 6 5.7770 0.3940 3.7014 16 6 5.3174 1.5557 4.5846 17 1 4.3745 1.9496 4.2052 18 6 6.3758 2.6603 4.5659 19 6 5.1228 1.0600 6.0189 20 6 4.5535 2.1719 6.8618 21 1 4.3504 3.1356 6.4188 22 6 4.2919 1.9589 8.1987 23 7 3.7946 2.9290 8.9342 24 14 4.6426 0.2916 8.9649 25 1 6.0321 0.2700 9.4885 26 1 3.6903 0.0482 10.0780 27 1 4.4844 -0.7685 7.9372 28 6 3.5804 -1.1973 -0.0035 29 6 2.1981 -1.1973 -0.0001 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6582 2.1324 0.0004 34 1 4.1205 2.1323 0.0001 35 1 7.9598 -1.8996 -1.6460 36 1 8.0688 -0.1532 -1.3188 37 1 7.9092 -2.3699 0.7749 38 1 9.3542 -1.4124 0.3676 39 1 8.1860 -0.5444 2.4061 40 1 8.2181 0.6527 1.0882 41 1 6.4513 1.6439 2.2110 42 1 5.0670 -0.4289 3.7842 43 1 6.7617 0.0584 4.0265 44 1 7.3187 2.2665 4.9452 45 1 6.5145 3.0135 3.5441 46 1 6.0486 3.4878 5.1955 47 1 4.4354 0.2141 6.0209 48 1 6.0835 0.7484 6.4291 49 1 3.6103 2.7790 9.8747 50 1 4.1204 -2.1326 -0.0070 51 1 1.6580 -2.1325 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602572761.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:22 Heat of formation + Delta-G solvation = -63.917935 kcal Electronic energy + Delta-G solvation = -27258.036244 eV Core-core repulsion = 23734.177929 eV Total energy + Delta-G solvation = -3523.858315 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.15739 -39.58857 -38.27616 -35.94742 -34.49098 -34.32718 -32.80188 -31.70792 -30.65493 -29.14095 -27.75073 -26.75250 -25.28912 -24.14044 -23.56092 -23.13882 -21.70476 -21.28488 -20.58502 -18.96102 -17.77151 -17.30991 -16.82007 -16.64370 -16.08700 -16.00050 -15.83707 -15.48543 -15.37651 -15.08131 -14.87902 -14.65016 -14.45490 -14.17994 -14.01316 -13.80299 -13.78979 -13.56143 -13.39004 -12.99609 -12.87731 -12.73354 -12.64332 -12.52145 -12.29763 -12.12101 -12.05382 -11.79128 -11.77078 -11.73348 -11.44585 -11.37277 -11.19404 -11.07187 -10.74184 -10.51776 -9.69753 -9.35511 -9.15803 -8.26488 -6.28414 0.51171 0.63330 1.33697 1.36281 1.47735 2.36702 2.68021 2.94611 3.08761 3.26847 3.77412 3.88068 3.94070 3.98840 4.06565 4.12072 4.18681 4.22931 4.24543 4.27465 4.28612 4.41384 4.52682 4.55703 4.68070 4.71113 4.71777 4.82527 4.84069 4.86114 4.90650 4.93401 5.00236 5.01310 5.02186 5.04335 5.12285 5.24233 5.28962 5.30957 5.34849 5.38223 5.54715 5.60633 5.70025 5.73220 5.78320 5.80077 6.02956 6.23323 6.32767 6.36037 6.53102 6.78947 7.35049 8.90282 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.010389 B = 0.003792 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.555718 B = 7381.788486 C = 9112.912251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.099 4.099 3 C -0.136 4.136 4 C -0.095 4.095 5 C -0.076 4.076 6 C 0.151 3.849 7 H 0.070 0.930 8 O -0.390 6.390 9 C 0.055 3.945 10 C -0.147 4.147 11 C -0.150 4.150 12 C 0.071 3.929 13 H 0.067 0.933 14 N -0.675 5.675 15 C 0.083 3.917 16 C -0.068 4.068 17 H 0.050 0.950 18 C -0.127 4.127 19 C -0.005 4.005 20 C -0.517 4.517 21 H 0.035 0.965 22 C 0.003 3.997 23 N -0.953 5.953 24 Si 0.945 3.055 25 H -0.266 1.266 26 H -0.285 1.285 27 H -0.251 1.251 28 C -0.108 4.108 29 C -0.138 4.138 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.110 0.890 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.346 0.654 42 H 0.054 0.946 43 H 0.033 0.967 44 H 0.049 0.951 45 H 0.067 0.933 46 H 0.033 0.967 47 H 0.011 0.989 48 H 0.016 0.984 49 H 0.264 0.736 50 H 0.120 0.880 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.702 -9.774 -24.076 26.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.099 4.099 3 C -0.154 4.154 4 C -0.113 4.113 5 C -0.076 4.076 6 C 0.093 3.907 7 H 0.088 0.912 8 O -0.309 6.309 9 C -0.021 4.021 10 C -0.186 4.186 11 C -0.189 4.189 12 C -0.040 4.040 13 H 0.086 0.914 14 N -0.308 5.308 15 C -0.046 4.046 16 C -0.087 4.087 17 H 0.068 0.932 18 C -0.184 4.184 19 C -0.043 4.043 20 C -0.555 4.555 21 H 0.054 0.946 22 C -0.193 4.193 23 N -0.594 5.594 24 Si 0.769 3.231 25 H -0.191 1.191 26 H -0.211 1.211 27 H -0.175 1.175 28 C -0.126 4.126 29 C -0.156 4.156 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.128 0.872 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.166 0.834 42 H 0.073 0.927 43 H 0.051 0.949 44 H 0.068 0.932 45 H 0.085 0.915 46 H 0.052 0.948 47 H 0.029 0.971 48 H 0.034 0.966 49 H 0.073 0.927 50 H 0.138 0.862 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.849 -9.964 -24.141 26.563 hybrid contribution 0.967 -0.162 1.489 1.783 sum 5.816 -10.126 -22.653 25.485 Atomic orbital electron populations 1.20809 0.89905 1.03194 1.02944 1.20218 0.97261 0.93175 0.99246 1.21216 0.94324 0.98213 1.01660 1.20985 0.94238 0.97580 0.98479 1.19460 0.93769 0.93577 1.00825 1.20672 0.90320 0.90906 0.88840 0.91214 1.87951 1.22553 1.54918 1.65475 1.22790 0.79717 1.02650 0.96923 1.22141 1.02188 0.98786 0.95438 1.22343 0.95547 1.00494 1.00544 1.22082 0.93712 0.94969 0.93210 0.91425 1.60365 1.56895 1.07701 1.05809 1.21811 0.98864 0.96740 0.87205 1.20850 0.98470 0.95349 0.94029 0.93173 1.21639 0.97854 0.98211 1.00690 1.19543 0.95674 0.95329 0.93772 1.21433 1.41091 0.98566 0.94409 0.94637 1.25961 0.94705 1.00653 0.97977 1.70069 1.46831 1.34791 1.07726 0.85731 0.78478 0.80566 0.78312 1.19133 1.21136 1.17459 1.21018 0.94276 0.97947 0.99402 1.21210 0.94192 0.98191 1.01964 0.90069 0.91127 0.91345 0.85108 0.85471 0.87178 0.92139 0.91677 0.88961 0.91714 0.90531 0.83387 0.92748 0.94860 0.93209 0.91457 0.94752 0.97117 0.96563 0.92686 0.86158 0.85021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 10.01 71.23 0.71 -1.30 16 2 C -0.10 -2.34 5.88 -19.87 -0.12 -2.45 16 3 C -0.14 -3.33 9.70 22.27 0.22 -3.11 16 4 C -0.09 -2.37 9.67 22.27 0.22 -2.16 16 5 C -0.08 -1.93 4.64 -19.87 -0.09 -2.02 16 6 C 0.15 3.31 2.55 29.88 0.08 3.39 16 7 H 0.07 1.43 8.00 -2.38 -0.02 1.41 16 8 O -0.39 -8.33 9.72 -148.98 -1.45 -9.77 16 9 C 0.06 0.81 6.84 72.01 0.49 1.30 16 10 C -0.15 -2.10 6.14 30.68 0.19 -1.91 16 11 C -0.15 -2.63 5.28 30.71 0.16 -2.47 16 12 C 0.07 1.58 2.07 45.00 0.09 1.67 16 13 H 0.07 1.75 7.80 -2.39 -0.02 1.73 16 14 N -0.68 -17.26 5.90 -491.12 -2.90 -20.16 16 15 C 0.08 2.57 4.95 86.30 0.43 3.00 16 16 C -0.07 -2.63 2.54 -10.79 -0.03 -2.66 16 17 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 18 C -0.13 -4.46 8.77 71.98 0.63 -3.83 16 19 C -0.01 -0.25 3.52 29.85 0.10 -0.14 16 20 C -0.52 -30.00 8.96 25.60 0.23 -29.78 16 21 H 0.04 2.27 7.30 -2.92 -0.02 2.25 16 22 C 0.00 0.19 5.47 84.66 0.46 0.65 16 23 N -0.95 -60.59 13.96 21.45 0.30 -60.29 16 24 Si 0.95 45.14 27.47 68.60 1.88 47.02 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 26 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 27 H -0.25 -11.26 6.54 99.48 0.65 -10.61 16 28 C -0.11 -2.76 9.36 22.27 0.21 -2.55 16 29 C -0.14 -3.30 9.70 22.27 0.22 -3.08 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 1.17 8.09 -2.39 -0.02 1.15 16 32 H 0.07 1.19 8.09 -2.39 -0.02 1.17 16 33 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 34 H 0.13 2.86 8.04 -2.91 -0.02 2.84 16 35 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 1.22 7.57 -2.39 -0.02 1.21 16 40 H 0.08 1.19 8.09 -2.38 -0.02 1.17 16 41 H 0.35 7.98 6.69 -89.70 -0.60 7.38 16 42 H 0.05 1.82 8.06 -2.39 -0.02 1.80 16 43 H 0.03 0.97 7.53 -2.39 -0.02 0.95 16 44 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.07 1.90 6.68 -2.39 -0.02 1.88 16 46 H 0.03 1.42 6.95 -2.39 -0.02 1.41 16 47 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16 48 H 0.02 0.74 7.57 -2.38 -0.02 0.72 16 49 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 50 H 0.12 2.92 7.77 -2.91 -0.02 2.90 16 51 H 0.13 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -68.07 396.70 2.26 -65.81 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.23 Total: 24.85 kcal Atomic # 6 Polarization: -51.66 SS G_CDS: 4.20 Total: -47.46 kcal Atomic # 7 Polarization: -77.85 SS G_CDS: -2.60 Total: -80.45 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -1.45 Total: -9.77 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.02 kcal Total: -68.07 2.26 -65.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602572761.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.895 kcal (2) G-P(sol) polarization free energy of solvation -68.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds