Wall clock time and date at job start Tue Mar 31 2020 11:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38292 * 119.96986 * 2 1 4 4 C 1.38242 * 120.11055 * 179.72627 * 3 2 1 5 5 C 1.38169 * 120.05729 * 0.55393 * 4 3 2 6 6 C 1.50699 * 120.03097 * 179.74505 * 5 4 3 7 7 N 1.46897 * 109.47187 * 259.72729 * 6 5 4 8 8 C 1.46905 * 111.00138 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47028 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.46929 * 304.98924 * 9 8 7 11 11 C 1.52997 * 109.47317 * 64.99820 * 9 8 7 12 12 C 1.53006 * 109.46623 * 184.99640 * 9 8 7 13 13 C 1.50703 * 109.46967 * 174.99771 * 12 9 8 14 14 H 1.07996 * 119.99755 * 0.02562 * 13 12 9 15 15 C 1.37876 * 120.00135 * 179.97438 * 13 12 9 16 16 N 1.31512 * 119.99773 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99975 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47293 * 60.00361 * 17 15 13 19 19 H 1.48506 * 109.47160 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47416 * 300.00209 * 17 15 13 21 21 C 1.38712 * 119.93923 * 359.46867 * 5 4 3 22 22 O 1.35899 * 120.05423 * 180.22912 * 21 5 4 23 23 C 1.42899 * 117.00147 * 179.97438 * 22 21 5 24 24 C 1.52999 * 109.47001 * 180.02562 * 23 22 21 25 25 C 1.53004 * 117.49894 * 243.61886 * 24 23 22 26 26 C 1.52996 * 60.00142 * 252.51270 * 25 24 23 27 27 C 1.38122 * 119.97338 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.46369 * 269.97247 * 1 2 3 29 29 H 1.08994 * 109.47301 * 29.97434 * 1 2 3 30 30 H 1.09004 * 109.46852 * 149.97847 * 1 2 3 31 31 H 1.08003 * 119.94233 * 0.02562 * 3 2 1 32 32 H 1.08001 * 119.97353 * 180.27074 * 4 3 2 33 33 H 1.08996 * 109.47333 * 139.72395 * 6 5 4 34 34 H 1.09004 * 109.46586 * 19.72271 * 6 5 4 35 35 H 1.00906 * 110.99758 * 303.95069 * 7 6 5 36 36 H 1.08994 * 109.47305 * 59.99331 * 8 7 6 37 37 H 1.08998 * 109.46287 * 299.99779 * 8 7 6 38 38 H 1.09002 * 109.47153 * 299.99641 * 11 9 8 39 39 H 1.09001 * 109.46832 * 179.97438 * 11 9 8 40 40 H 1.09004 * 109.47261 * 59.99813 * 11 9 8 41 41 H 1.09001 * 109.47326 * 294.99995 * 12 9 8 42 42 H 1.09000 * 109.46904 * 55.00348 * 12 9 8 43 43 H 0.97000 * 120.00259 * 179.97438 * 16 15 13 44 44 H 1.09001 * 109.47171 * 300.00139 * 23 22 21 45 45 H 1.08999 * 109.47019 * 60.00365 * 23 22 21 46 46 H 1.09002 * 115.55536 * 29.32863 * 24 23 22 47 47 H 1.09001 * 117.49814 * 0.02562 * 25 24 23 48 48 H 1.08998 * 117.49682 * 145.02116 * 25 24 23 49 49 H 1.09005 * 117.49731 * 252.50802 * 26 25 24 50 50 H 1.08995 * 117.49541 * 107.48955 * 26 25 24 51 51 H 1.07997 * 120.02919 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5802 1.2014 0.0057 5 6 4.2753 0.0073 -0.0001 6 6 5.7822 0.0117 0.0003 7 7 6.2730 -0.2270 -1.3635 8 6 7.7416 -0.2301 -1.4016 9 6 8.2140 -0.4816 -2.8349 10 1 7.7678 -1.4034 -3.2080 11 6 7.7884 0.6878 -3.7249 12 6 9.7386 -0.6089 -2.8544 13 6 10.1942 -0.9780 -4.2426 14 1 9.4690 -1.1084 -5.0321 15 6 11.5370 -1.1483 -4.5050 16 7 12.4202 -0.9890 -3.5437 17 14 12.1018 -1.6052 -6.2259 18 1 11.6806 -0.5496 -7.1817 19 1 13.5816 -1.7288 -6.2448 20 1 11.4922 -2.9010 -6.6193 21 6 3.5846 -1.1957 -0.0006 22 8 4.2659 -2.3716 -0.0016 23 6 3.4894 -3.5712 -0.0015 24 6 4.4233 -4.7832 -0.0021 25 6 4.3763 -5.7107 -1.2180 26 6 3.7836 -6.1680 0.1163 27 6 2.1971 -1.1965 -0.0005 28 1 -0.3632 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6564 2.1325 0.0004 32 1 4.1175 2.1383 0.0101 33 1 6.1477 -0.7746 0.6608 34 1 6.1425 0.9784 0.3521 35 1 5.9001 -1.0872 -1.7366 36 1 8.1203 -1.0182 -0.7509 37 1 8.1158 0.7348 -1.0593 38 1 6.7023 0.7785 -3.7111 39 1 8.1255 0.5087 -4.7459 40 1 8.2348 1.6096 -3.3517 41 1 10.1863 0.3422 -2.5659 42 1 10.0475 -1.3836 -2.1526 43 1 13.3649 -1.1092 -3.7282 44 1 2.8613 -3.5974 0.8890 45 1 2.8599 -3.5967 -0.8910 46 1 5.3896 -4.6324 0.4792 47 1 3.6803 -5.4572 -2.0177 48 1 5.3118 -6.1701 -1.5370 49 1 4.3292 -6.9284 0.6751 50 1 2.6975 -6.2156 0.1945 51 1 1.6571 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602573917.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:48 Heat of formation + Delta-G solvation = -15.693222 kcal Electronic energy + Delta-G solvation = -26211.026313 eV Core-core repulsion = 22689.259178 eV Total energy + Delta-G solvation = -3521.767135 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.50688 -38.32996 -36.86237 -36.76452 -34.44661 -32.68382 -31.49644 -30.22289 -28.40858 -27.72213 -26.64992 -25.16100 -23.55306 -22.74186 -22.62269 -22.03984 -21.33731 -20.45731 -19.01395 -17.83135 -16.51621 -16.31640 -16.16909 -15.87745 -15.29061 -14.91944 -14.59998 -14.54701 -14.14649 -14.08946 -13.91245 -13.76428 -13.36691 -13.16397 -12.57746 -12.45697 -12.41991 -12.09020 -11.86348 -11.82882 -11.62182 -11.53313 -11.38438 -11.26584 -11.18516 -10.88185 -10.79520 -10.72210 -10.69165 -10.24354 -10.22925 -10.14902 -9.61243 -9.11267 -8.92725 -8.81153 -8.27507 -8.22350 -7.90701 -5.92460 -3.93223 1.19677 1.35413 2.89005 3.37722 3.41687 3.44547 3.51844 3.59758 4.39015 4.50682 4.52866 4.55545 4.64430 4.69579 4.77357 4.86250 4.93600 5.02790 5.06414 5.18769 5.20845 5.32053 5.32662 5.43074 5.43275 5.52633 5.56190 5.62176 5.63540 5.77211 5.80831 5.85912 5.89880 6.01583 6.04129 6.18766 6.26422 6.39981 6.50710 6.51136 6.65754 6.71935 6.78906 7.10654 7.26810 7.27657 7.31295 7.49800 7.75121 7.81576 7.93529 8.08496 8.52956 9.13058 9.69647 11.19148 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011447 B = 0.002881 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.388224 B = 9715.559244 C =11416.102876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.054 4.054 3 C -0.159 4.159 4 C -0.061 4.061 5 C -0.109 4.109 6 C 0.106 3.894 7 N -0.680 5.680 8 C 0.064 3.936 9 C -0.081 4.081 10 H 0.052 0.948 11 C -0.122 4.122 12 C 0.028 3.972 13 C -0.511 4.511 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.890 3.110 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.278 1.278 21 C 0.139 3.861 22 O -0.307 6.307 23 C 0.094 3.906 24 C -0.158 4.158 25 C -0.173 4.173 26 C -0.171 4.171 27 C -0.212 4.212 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.121 0.879 32 H 0.130 0.870 33 H 0.038 0.962 34 H 0.075 0.925 35 H 0.340 0.660 36 H 0.023 0.977 37 H 0.065 0.935 38 H 0.041 0.959 39 H 0.052 0.948 40 H 0.039 0.961 41 H 0.016 0.984 42 H 0.012 0.988 43 H 0.259 0.741 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.117 0.883 47 H 0.097 0.903 48 H 0.100 0.900 49 H 0.100 0.900 50 H 0.095 0.905 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.928 -3.031 10.935 27.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.054 4.054 3 C -0.177 4.177 4 C -0.079 4.079 5 C -0.110 4.110 6 C -0.023 4.023 7 N -0.311 5.311 8 C -0.064 4.064 9 C -0.100 4.100 10 H 0.071 0.929 11 C -0.179 4.179 12 C -0.010 4.010 13 C -0.550 4.550 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C 0.093 3.907 22 O -0.221 6.221 23 C 0.019 3.981 24 C -0.176 4.176 25 C -0.210 4.210 26 C -0.208 4.208 27 C -0.230 4.230 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.139 0.861 32 H 0.148 0.852 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.157 0.843 36 H 0.042 0.958 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.034 0.966 42 H 0.030 0.970 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.135 0.865 47 H 0.115 0.885 48 H 0.119 0.881 49 H 0.118 0.882 50 H 0.113 0.887 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -24.561 -2.420 10.788 26.935 hybrid contribution 0.440 -1.229 -0.496 1.396 sum -24.121 -3.649 10.292 26.478 Atomic orbital electron populations 1.20794 0.91265 1.02769 1.02232 1.19649 0.95783 0.92578 0.97384 1.20907 0.94130 0.97361 1.05345 1.20887 0.93723 0.97010 0.96298 1.19235 0.96010 0.90231 1.05561 1.20668 0.89259 1.01139 0.91232 1.60652 1.09226 1.42001 1.19197 1.22145 0.85592 1.00081 0.98602 1.21183 0.99230 0.97729 0.91890 0.92946 1.21580 0.98966 0.97521 0.99857 1.19115 0.88060 0.96917 0.96868 1.21216 0.91787 1.46352 0.95616 0.92651 1.25017 0.96996 0.95773 0.96780 1.69958 1.01483 1.50331 1.32004 0.86700 0.77385 0.79009 0.85144 1.20273 1.21402 1.20350 1.18818 0.90226 0.85509 0.96099 1.86082 1.35539 1.12042 1.88400 1.22266 0.92909 0.81862 1.01095 1.22098 1.01651 0.89482 1.04350 1.23111 1.03423 1.02993 0.91455 1.22981 1.00577 0.96188 1.01067 1.21014 0.92719 0.98714 1.10582 0.91171 0.91354 0.91725 0.86068 0.85220 0.94440 0.90643 0.84268 0.95850 0.91659 0.93952 0.92900 0.94210 0.96582 0.96969 0.93095 0.91865 0.91912 0.86471 0.88503 0.88106 0.88179 0.88700 0.85869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 36.01 0.36 -0.43 16 2 C -0.05 -0.53 5.88 -104.64 -0.62 -1.15 16 3 C -0.16 -1.63 9.70 -39.56 -0.38 -2.01 16 4 C -0.06 -0.70 9.66 -39.61 -0.38 -1.08 16 5 C -0.11 -1.43 5.41 -104.47 -0.56 -1.99 16 6 C 0.11 1.50 5.48 -4.98 -0.03 1.47 16 7 N -0.68 -11.02 5.95 -115.06 -0.68 -11.70 16 8 C 0.06 1.19 5.07 -3.82 -0.02 1.17 16 9 C -0.08 -1.75 2.48 -90.62 -0.22 -1.97 16 10 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 11 C -0.12 -2.49 8.89 37.16 0.33 -2.16 16 12 C 0.03 0.74 4.45 -27.88 -0.12 0.61 16 13 C -0.51 -14.68 8.41 -34.44 -0.29 -14.97 16 14 H 0.06 1.55 7.05 -52.49 -0.37 1.18 16 15 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 17 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 21 C 0.14 1.75 6.66 -39.22 -0.26 1.49 16 22 O -0.31 -3.88 9.32 -19.42 -0.18 -4.06 16 23 C 0.09 0.90 5.02 37.16 0.19 1.08 16 24 C -0.16 -1.47 6.06 -90.62 -0.55 -2.02 16 25 C -0.17 -1.50 10.18 -26.73 -0.27 -1.78 16 26 C -0.17 -1.25 10.25 -26.73 -0.27 -1.53 16 27 C -0.21 -2.27 8.69 -39.43 -0.34 -2.61 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 30 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 31 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 32 H 0.13 1.32 8.03 -52.49 -0.42 0.90 16 33 H 0.04 0.55 7.85 -51.93 -0.41 0.14 16 34 H 0.08 1.01 8.00 -51.93 -0.42 0.59 16 35 H 0.34 5.63 8.67 -39.29 -0.34 5.28 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.04 0.79 7.75 -51.93 -0.40 0.38 16 39 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 40 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 45 H 0.06 0.55 7.39 -51.93 -0.38 0.17 16 46 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.10 0.79 8.03 -51.93 -0.42 0.37 16 48 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 49 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.12 1.08 6.30 -52.49 -0.33 0.75 16 LS Contribution 412.96 15.07 6.22 6.22 Total: -1.00 -31.32 412.96 -11.77 -43.09 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -9.30 Total: 2.50 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: -3.55 Total: -26.37 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.05 Total: -38.46 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -0.18 Total: -4.06 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -31.32 -11.77 -43.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602573917.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.398 kcal (2) G-P(sol) polarization free energy of solvation -31.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds