Wall clock time and date at job start Tue Mar 31 2020 11:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38294 * 119.97461 * 2 1 4 4 C 1.38244 * 120.11199 * 180.30239 * 3 2 1 5 5 C 1.38171 * 120.05436 * 359.44067 * 4 3 2 6 6 C 1.50699 * 120.02521 * 180.30143 * 5 4 3 7 7 N 1.46904 * 109.47301 * 260.00019 * 6 5 4 8 8 C 1.46897 * 111.00117 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.46997 * 179.97438 * 8 7 6 10 10 H 1.09005 * 109.46853 * 54.99918 * 9 8 7 11 11 C 1.52993 * 109.47417 * 295.00003 * 9 8 7 12 12 C 1.52999 * 109.47123 * 174.99580 * 9 8 7 13 13 C 1.50695 * 109.47112 * 185.00163 * 12 9 8 14 14 H 1.08000 * 120.00637 * 0.02562 * 13 12 9 15 15 C 1.37879 * 120.00112 * 180.02562 * 13 12 9 16 16 N 1.31521 * 119.99961 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00400 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46804 * 59.99746 * 17 15 13 19 19 H 1.48498 * 109.47336 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46721 * 299.99889 * 17 15 13 21 21 C 1.38706 * 119.94402 * 0.28089 * 5 4 3 22 22 O 1.35899 * 120.05784 * 179.97438 * 21 5 4 23 23 C 1.42897 * 117.00306 * 180.02562 * 22 21 5 24 24 C 1.53001 * 109.47444 * 180.02562 * 23 22 21 25 25 C 1.52999 * 117.49723 * 243.62169 * 24 23 22 26 26 C 1.52996 * 59.99981 * 252.50288 * 25 24 23 27 27 C 1.38125 * 119.97454 * 179.74555 * 2 1 3 28 28 H 1.09000 * 109.47133 * 270.25376 * 1 2 3 29 29 H 1.09003 * 109.46925 * 30.25419 * 1 2 3 30 30 H 1.09004 * 109.47278 * 150.24953 * 1 2 3 31 31 H 1.08001 * 119.94303 * 0.03884 * 3 2 1 32 32 H 1.08002 * 119.97539 * 179.72689 * 4 3 2 33 33 H 1.08995 * 109.47705 * 20.00651 * 6 5 4 34 34 H 1.09002 * 109.46967 * 140.00797 * 6 5 4 35 35 H 1.00902 * 111.00060 * 303.96231 * 7 6 5 36 36 H 1.08996 * 109.47077 * 300.00212 * 8 7 6 37 37 H 1.09000 * 109.46925 * 60.00144 * 8 7 6 38 38 H 1.09005 * 109.47325 * 59.99866 * 11 9 8 39 39 H 1.09008 * 109.47605 * 179.97438 * 11 9 8 40 40 H 1.08992 * 109.47324 * 299.99879 * 11 9 8 41 41 H 1.08994 * 109.47269 * 305.00405 * 12 9 8 42 42 H 1.09002 * 109.46390 * 65.00507 * 12 9 8 43 43 H 0.96998 * 119.99958 * 179.97438 * 16 15 13 44 44 H 1.09002 * 109.47042 * 299.99603 * 23 22 21 45 45 H 1.08996 * 109.47358 * 60.00240 * 23 22 21 46 46 H 1.09002 * 115.54723 * 29.31786 * 24 23 22 47 47 H 1.08999 * 117.50214 * 359.97438 * 25 24 23 48 48 H 1.09004 * 117.49962 * 145.01431 * 25 24 23 49 49 H 1.08997 * 117.50445 * 252.50907 * 26 25 24 50 50 H 1.09001 * 117.49767 * 107.48304 * 26 25 24 51 51 H 1.08007 * 120.02406 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2013 -0.0063 5 6 4.2752 0.0071 -0.0010 6 6 5.7822 0.0115 -0.0010 7 7 6.2726 -0.2337 -1.3639 8 6 7.7411 -0.2370 -1.4023 9 6 8.2131 -0.4954 -2.8345 10 1 7.7624 0.2378 -3.5035 11 6 7.7939 -1.9028 -3.2637 12 6 9.7370 -0.3753 -2.8987 13 6 10.1915 -0.5079 -4.3294 14 1 9.4661 -0.6619 -5.1145 15 6 11.5336 -0.4325 -4.6362 16 7 12.4172 -0.2444 -3.6803 17 14 12.0971 -0.5961 -6.4097 18 1 11.4814 0.4808 -7.2260 19 1 13.5763 -0.4809 -6.4718 20 1 11.6814 -1.9191 -6.9410 21 6 3.5845 -1.1958 0.0049 22 8 4.2657 -2.3718 0.0096 23 6 3.4891 -3.5713 0.0149 24 6 4.4228 -4.7834 0.0204 25 6 4.3763 -5.7164 -1.1913 26 6 3.7831 -6.1676 0.1448 27 6 2.1970 -1.1965 0.0053 28 1 -0.3633 0.0046 1.0277 29 1 -0.3633 0.8877 -0.5178 30 1 -0.3634 -0.8922 -0.5100 31 1 1.6565 2.1325 0.0006 32 1 4.1176 2.1381 -0.0108 33 1 6.1428 0.9797 0.3462 34 1 6.1478 -0.7718 0.6630 35 1 5.8995 -1.0955 -1.7329 36 1 8.1155 0.7294 -1.0647 37 1 8.1199 -1.0221 -0.7481 38 1 6.7082 -1.9883 -3.2180 39 1 8.1298 -2.0867 -4.2842 40 1 8.2445 -2.6359 -2.5948 41 1 10.0417 0.5961 -2.5093 42 1 10.1892 -1.1653 -2.2991 43 1 13.3614 -0.1917 -3.8961 44 1 2.8607 -3.5934 0.9052 45 1 2.8601 -3.6009 -0.8748 46 1 5.3890 -4.6304 0.5013 47 1 3.6803 -5.4670 -1.9922 48 1 5.3120 -6.1774 -1.5079 49 1 4.3283 -6.9254 0.7074 50 1 2.6969 -6.2147 0.2229 51 1 1.6570 -2.1318 0.0090 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602573919.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:51 Heat of formation + Delta-G solvation = -15.418688 kcal Electronic energy + Delta-G solvation = -26291.224544 eV Core-core repulsion = 22769.469314 eV Total energy + Delta-G solvation = -3521.755230 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.51232 -38.34092 -36.87853 -36.84015 -34.43709 -32.68964 -31.47212 -30.22567 -28.40764 -27.73034 -26.69505 -25.28539 -23.62327 -22.75322 -22.63004 -21.99754 -21.33439 -20.45527 -18.89718 -17.84796 -16.52307 -16.47042 -16.16629 -15.88588 -15.30332 -14.99101 -14.61451 -14.60776 -14.18170 -14.10160 -13.82166 -13.65321 -13.36194 -13.18039 -12.58826 -12.53626 -12.39000 -12.16705 -11.87236 -11.84223 -11.72986 -11.60099 -11.43555 -11.24182 -11.21199 -10.89231 -10.82517 -10.74049 -10.66700 -10.28384 -10.25562 -10.11484 -9.63556 -9.10520 -8.93101 -8.82371 -8.27436 -8.23553 -7.92227 -5.92434 -3.93255 1.19646 1.35277 2.87993 3.37899 3.41886 3.44721 3.50038 3.59713 4.37518 4.50690 4.51607 4.54876 4.63450 4.68567 4.77607 4.85606 4.92628 5.02603 5.05805 5.18766 5.19483 5.30218 5.32688 5.43084 5.43220 5.52455 5.56204 5.59930 5.63322 5.78178 5.79322 5.87699 5.89624 5.93790 6.03409 6.15093 6.19865 6.37111 6.40170 6.51243 6.57550 6.66585 6.72037 7.04511 7.18780 7.25888 7.29773 7.50330 7.75938 7.81856 7.94235 8.08545 8.52757 9.13006 9.69653 11.19128 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011911 B = 0.002832 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.132159 B = 9886.292826 C =11498.342516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.053 4.053 3 C -0.159 4.159 4 C -0.060 4.060 5 C -0.110 4.110 6 C 0.105 3.895 7 N -0.683 5.683 8 C 0.065 3.935 9 C -0.083 4.083 10 H 0.064 0.936 11 C -0.132 4.132 12 C 0.029 3.971 13 C -0.512 4.512 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.890 3.110 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.278 1.278 21 C 0.139 3.861 22 O -0.307 6.307 23 C 0.094 3.906 24 C -0.157 4.157 25 C -0.173 4.173 26 C -0.171 4.171 27 C -0.212 4.212 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.122 0.878 32 H 0.130 0.870 33 H 0.076 0.924 34 H 0.037 0.963 35 H 0.341 0.659 36 H 0.066 0.934 37 H 0.023 0.977 38 H 0.031 0.969 39 H 0.061 0.939 40 H 0.040 0.960 41 H 0.015 0.985 42 H 0.014 0.986 43 H 0.259 0.741 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.117 0.883 47 H 0.097 0.903 48 H 0.100 0.900 49 H 0.100 0.900 50 H 0.095 0.905 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.841 -5.593 11.385 27.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.054 4.054 3 C -0.177 4.177 4 C -0.079 4.079 5 C -0.111 4.111 6 C -0.023 4.023 7 N -0.315 5.315 8 C -0.064 4.064 9 C -0.102 4.102 10 H 0.083 0.917 11 C -0.189 4.189 12 C -0.009 4.009 13 C -0.550 4.550 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C 0.093 3.907 22 O -0.221 6.221 23 C 0.018 3.982 24 C -0.176 4.176 25 C -0.210 4.210 26 C -0.208 4.208 27 C -0.230 4.230 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.140 0.860 32 H 0.148 0.852 33 H 0.094 0.906 34 H 0.056 0.944 35 H 0.160 0.840 36 H 0.084 0.916 37 H 0.041 0.959 38 H 0.050 0.950 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.033 0.967 42 H 0.032 0.968 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.135 0.865 47 H 0.115 0.885 48 H 0.119 0.881 49 H 0.118 0.882 50 H 0.113 0.887 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -24.477 -4.965 11.230 27.384 hybrid contribution 0.423 -1.038 -0.534 1.241 sum -24.053 -6.002 10.696 27.000 Atomic orbital electron populations 1.20793 0.91254 1.02774 1.02237 1.19651 0.95789 0.92575 0.97367 1.20913 0.94129 0.97377 1.05319 1.20896 0.93730 0.97039 0.96215 1.19242 0.96016 0.90256 1.05576 1.20674 0.89273 1.01172 0.91226 1.60690 1.09284 1.42054 1.19499 1.22133 0.85594 1.00074 0.98588 1.21208 0.99433 0.96389 0.93193 0.91736 1.21715 0.97878 0.97234 1.02094 1.19101 0.87943 0.96947 0.96896 1.21216 0.91829 1.48721 0.93241 0.92643 1.25021 0.96996 0.95592 0.96949 1.69961 1.01508 1.50419 1.31874 0.86698 0.77388 0.78603 0.85543 1.20275 1.21405 1.20346 1.18814 0.90235 0.85491 0.96148 1.86079 1.35538 1.12040 1.88423 1.22266 0.92914 0.81872 1.01110 1.22094 1.01647 0.89453 1.04363 1.23108 1.03397 1.02977 0.91492 1.22981 1.00598 0.96228 1.01011 1.21013 0.92704 0.98718 1.10601 0.91166 0.91345 0.91724 0.86041 0.85168 0.90587 0.94449 0.83993 0.91575 0.95913 0.95003 0.92031 0.94096 0.96682 0.96789 0.93092 0.91852 0.91910 0.86494 0.88499 0.88135 0.88183 0.88686 0.85864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 36.00 0.36 -0.44 16 2 C -0.05 -0.53 5.88 -104.65 -0.62 -1.15 16 3 C -0.16 -1.64 9.70 -39.56 -0.38 -2.03 16 4 C -0.06 -0.70 9.67 -39.60 -0.38 -1.09 16 5 C -0.11 -1.45 5.41 -104.47 -0.56 -2.01 16 6 C 0.11 1.51 5.48 -4.97 -0.03 1.48 16 7 N -0.68 -11.28 6.49 -115.06 -0.75 -12.03 16 8 C 0.06 1.20 5.14 -3.83 -0.02 1.18 16 9 C -0.08 -1.79 2.54 -90.62 -0.23 -2.02 16 10 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 11 C -0.13 -2.61 8.77 37.15 0.33 -2.29 16 12 C 0.03 0.76 4.45 -27.89 -0.12 0.63 16 13 C -0.51 -14.66 8.41 -34.44 -0.29 -14.94 16 14 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 15 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 17 Si 0.89 22.08 29.54 -169.99 -5.02 17.05 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C 0.14 1.75 6.66 -39.22 -0.26 1.49 16 22 O -0.31 -3.86 9.32 -19.42 -0.18 -4.05 16 23 C 0.09 0.88 5.02 37.16 0.19 1.07 16 24 C -0.16 -1.44 6.06 -90.62 -0.55 -1.98 16 25 C -0.17 -1.45 10.18 -26.73 -0.27 -1.72 16 26 C -0.17 -1.21 10.25 -26.73 -0.27 -1.48 16 27 C -0.21 -2.27 8.69 -39.43 -0.34 -2.62 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 30 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 31 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 32 H 0.13 1.35 8.04 -52.49 -0.42 0.93 16 33 H 0.08 1.03 8.00 -51.93 -0.42 0.61 16 34 H 0.04 0.55 7.85 -51.93 -0.41 0.15 16 35 H 0.34 5.69 6.92 -39.29 -0.27 5.42 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.03 0.55 6.68 -51.93 -0.35 0.20 16 39 H 0.06 1.30 6.95 -51.92 -0.36 0.94 16 40 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.06 0.51 7.66 -51.93 -0.40 0.12 16 45 H 0.06 0.54 7.40 -51.93 -0.38 0.16 16 46 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.10 0.77 8.03 -51.93 -0.42 0.35 16 48 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 50 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 51 H 0.12 1.08 6.30 -52.48 -0.33 0.75 16 LS Contribution 410.71 15.07 6.19 6.19 Total: -1.00 -31.35 410.71 -11.76 -43.10 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -9.17 Total: 2.86 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: -3.56 Total: -26.41 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: -0.01 Total: -38.75 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: -0.18 Total: -4.05 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.35 -11.76 -43.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602573919.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.684 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds