Wall clock time and date at job start Tue Mar 31 2020 11:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.46865 * 2 1 4 4 C 1.38229 * 120.00336 * 90.00428 * 3 2 1 5 5 C 1.38229 * 120.00424 * 179.97438 * 4 3 2 6 6 C 1.38236 * 119.99825 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.99771 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.51129 * 339.91551 * 7 6 5 9 9 C 1.53098 * 109.50573 * 100.00246 * 7 6 5 10 10 N 1.47014 * 109.25958 * 176.82910 * 9 7 6 11 11 C 1.46893 * 111.00395 * 177.60535 * 10 9 7 12 12 C 1.52997 * 109.47395 * 199.38998 * 11 10 9 13 13 H 1.08998 * 109.46937 * 303.93469 * 12 11 10 14 14 C 1.53005 * 109.46958 * 183.94271 * 12 11 10 15 15 C 1.52992 * 109.47162 * 63.94040 * 12 11 10 16 16 C 1.50701 * 109.47339 * 184.99907 * 15 12 11 17 17 H 1.08002 * 119.99817 * 0.02562 * 16 15 12 18 18 C 1.37879 * 120.00419 * 179.97438 * 16 15 12 19 19 N 1.31507 * 120.00036 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99783 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.46819 * 89.99553 * 20 18 16 22 22 H 1.48493 * 109.47081 * 209.99923 * 20 18 16 23 23 H 1.48506 * 109.47226 * 330.00202 * 20 18 16 24 24 C 1.47019 * 110.75038 * 301.38192 * 10 9 7 25 25 C 1.53097 * 109.25943 * 58.61251 * 24 10 9 26 26 O 1.43014 * 109.26185 * 303.15410 * 25 24 10 27 27 C 1.38233 * 120.00319 * 0.27323 * 6 5 4 28 28 C 1.38239 * 119.99758 * 269.97660 * 3 2 1 29 29 H 1.08998 * 109.47081 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47370 * 299.99666 * 1 2 3 31 31 H 1.09001 * 109.47725 * 59.99837 * 1 2 3 32 32 H 1.09008 * 109.47112 * 240.00104 * 2 1 3 33 33 H 1.08999 * 109.47217 * 120.00156 * 2 1 3 34 34 H 1.08007 * 119.99636 * 359.97224 * 4 3 2 35 35 H 1.08006 * 119.99981 * 179.97438 * 5 4 3 36 36 H 1.09002 * 109.50976 * 56.88782 * 9 7 6 37 37 H 1.09007 * 109.50525 * 296.75491 * 9 7 6 38 38 H 1.09002 * 109.47216 * 319.39296 * 11 10 9 39 39 H 1.09008 * 109.47224 * 79.38851 * 11 10 9 40 40 H 1.08997 * 109.47656 * 54.56490 * 14 12 11 41 41 H 1.09004 * 109.46994 * 174.56636 * 14 12 11 42 42 H 1.08999 * 109.47160 * 294.56112 * 14 12 11 43 43 H 1.09001 * 109.47090 * 305.00172 * 15 12 11 44 44 H 1.09000 * 109.47283 * 65.00135 * 15 12 11 45 45 H 0.97005 * 120.00123 * 179.97438 * 19 18 16 46 46 H 1.09004 * 109.50116 * 298.68071 * 24 10 9 47 47 H 1.09000 * 109.50922 * 178.55503 * 24 10 9 48 48 H 1.09000 * 109.50410 * 63.08663 * 25 24 10 49 49 H 1.09003 * 109.50785 * 183.21757 * 25 24 10 50 50 H 1.07992 * 120.00365 * 179.72461 * 27 6 5 51 51 H 1.07998 * 120.00229 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7239 3.3756 1.1971 6 6 2.9552 4.0269 -0.0001 7 6 3.4586 5.4474 -0.0001 8 1 3.2473 5.9085 0.9647 9 6 4.9690 5.4545 -0.2502 10 7 5.4416 6.8446 -0.3248 11 6 6.8982 6.8963 -0.5078 12 6 7.4140 8.2793 -0.1050 13 1 6.8913 9.0436 -0.6800 14 6 8.9152 8.3659 -0.3880 15 6 7.1626 8.5026 1.3875 16 6 7.5576 9.9088 1.7586 17 1 7.9486 10.5765 1.0051 18 6 7.4191 10.3433 3.0598 19 7 7.7634 11.5705 3.3834 20 14 6.7422 9.1886 4.3629 21 1 7.8614 8.4431 4.9931 22 1 6.0266 9.9761 5.3986 23 1 5.8008 8.2284 3.7327 24 6 4.7495 7.5732 -1.3979 25 6 3.2413 7.5448 -1.1364 26 8 2.8055 6.1864 -1.0358 27 6 2.7199 3.3771 -1.1972 28 6 2.2631 2.0723 -1.1972 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5138 0.8900 34 1 2.0823 1.5635 2.1324 35 1 2.9036 3.8848 2.1324 36 1 5.1848 4.9457 -1.1897 37 1 5.4757 4.9412 0.5672 38 1 7.3699 6.1368 0.1157 39 1 7.1398 6.7089 -1.5541 40 1 9.1036 8.1120 -1.4311 41 1 9.2638 9.3800 -0.1922 42 1 9.4475 7.6677 0.2579 43 1 6.1048 8.3533 1.6041 44 1 7.7554 7.7941 1.9659 45 1 7.6655 11.8763 4.2988 46 1 4.9619 7.0982 -2.3558 47 1 5.0961 8.6064 -1.4186 48 1 3.0237 8.0668 -0.2046 49 1 2.7200 8.0343 -1.9590 50 1 2.8963 3.8874 -2.1325 51 1 2.0830 1.5632 -2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602635848.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:35 Heat of formation + Delta-G solvation = -37.088666 kcal Electronic energy + Delta-G solvation = -26835.162873 eV Core-core repulsion = 23312.467962 eV Total energy + Delta-G solvation = -3522.694911 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.21460 -39.00922 -36.65487 -34.69071 -34.01234 -32.02024 -31.68235 -31.06998 -29.07510 -27.94423 -27.15693 -24.89928 -24.02453 -23.06793 -22.88096 -22.16431 -20.83836 -20.15719 -18.88374 -17.00292 -16.65305 -16.37708 -15.93728 -15.60931 -15.14610 -14.92508 -14.60802 -14.45579 -14.10866 -14.00943 -13.83083 -13.71491 -13.40617 -13.37450 -13.05268 -12.67686 -12.36085 -12.16694 -12.10402 -11.82168 -11.62766 -11.55878 -11.41435 -11.28184 -11.05307 -11.02542 -10.96697 -10.88342 -10.54641 -10.36465 -9.76321 -9.67869 -9.60285 -9.37413 -9.04219 -8.94844 -8.65757 -8.43911 -8.05140 -5.94889 -3.90385 1.13072 1.28660 3.37397 3.44759 3.48000 3.51947 3.79341 4.01640 4.49568 4.54864 4.59600 4.78883 4.87854 4.88901 5.00340 5.04880 5.08617 5.18333 5.23880 5.26418 5.35414 5.38212 5.40329 5.43193 5.57293 5.60137 5.63156 5.68670 5.76377 5.81137 5.83586 5.90464 5.91848 5.94437 5.97266 6.04892 6.16754 6.24930 6.29351 6.41312 6.44739 6.49344 6.82223 6.85485 6.94642 7.09550 7.15144 7.27164 7.30238 7.50306 7.68859 7.93284 8.65141 9.11060 9.69442 11.18781 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016571 B = 0.002932 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.311284 B = 9548.997129 C =10306.282478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.083 4.083 4 C -0.120 4.120 5 C -0.103 4.103 6 C -0.081 4.081 7 C 0.135 3.865 8 H 0.076 0.924 9 C 0.033 3.967 10 N -0.528 5.528 11 C 0.062 3.938 12 C -0.073 4.073 13 H 0.061 0.939 14 C -0.133 4.133 15 C -0.001 4.001 16 C -0.511 4.511 17 H 0.070 0.930 18 C 0.064 3.936 19 N -0.909 5.909 20 Si 0.876 3.124 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.262 1.262 24 C 0.019 3.981 25 C 0.064 3.936 26 O -0.381 6.381 27 C -0.088 4.088 28 C -0.123 4.123 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.038 0.962 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.025 0.975 40 H 0.030 0.970 41 H 0.066 0.934 42 H 0.045 0.955 43 H 0.031 0.969 44 H 0.003 0.997 45 H 0.260 0.740 46 H 0.036 0.964 47 H 0.093 0.907 48 H 0.064 0.936 49 H 0.097 0.903 50 H 0.125 0.875 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.460 -21.236 -9.806 26.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.083 4.083 4 C -0.138 4.138 5 C -0.121 4.121 6 C -0.082 4.082 7 C 0.077 3.923 8 H 0.094 0.906 9 C -0.096 4.096 10 N -0.252 5.252 11 C -0.065 4.065 12 C -0.092 4.092 13 H 0.079 0.921 14 C -0.191 4.191 15 C -0.038 4.038 16 C -0.549 4.549 17 H 0.088 0.912 18 C -0.136 4.136 19 N -0.549 5.549 20 Si 0.704 3.296 21 H -0.207 1.207 22 H -0.217 1.217 23 H -0.186 1.186 24 C -0.109 4.109 25 C -0.013 4.013 26 O -0.300 6.300 27 C -0.106 4.106 28 C -0.141 4.141 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.056 0.944 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.044 0.956 40 H 0.049 0.951 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.049 0.951 44 H 0.022 0.978 45 H 0.070 0.930 46 H 0.054 0.946 47 H 0.112 0.888 48 H 0.082 0.918 49 H 0.115 0.885 50 H 0.143 0.857 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.702 -20.965 -9.335 26.230 hybrid contribution 0.199 -0.639 0.231 0.708 sum -12.503 -21.604 -9.104 26.570 Atomic orbital electron populations 1.21747 0.94733 1.01602 1.02330 1.20543 0.96188 0.92734 1.02759 1.19909 0.98974 0.96190 0.93275 1.20948 1.00531 0.94749 0.97543 1.21001 0.98661 0.94954 0.97482 1.19578 1.00541 0.94411 0.93668 1.20887 0.90744 0.88684 0.92009 0.90563 1.22719 0.95099 0.90508 1.01230 1.62124 1.06010 1.11892 1.45195 1.22327 0.85849 1.00175 0.98159 1.21012 0.94766 0.93361 1.00016 0.92065 1.21703 0.96340 1.02803 0.98274 1.19529 0.97286 0.96572 0.90454 1.21222 1.41881 0.96630 0.95170 0.91236 1.25011 0.95191 0.94869 0.98566 1.69923 1.49368 1.16736 1.18879 0.86817 0.79758 0.81430 0.81569 1.20654 1.21735 1.18633 1.22811 0.94920 1.00780 0.92411 1.22695 0.93438 0.82767 1.02373 1.87943 1.63801 1.23492 1.54772 1.20977 0.97671 0.93997 0.98002 1.21011 1.00717 0.94897 0.97447 0.92477 0.92510 0.92530 0.91122 0.91083 0.86047 0.85717 0.94385 0.89798 0.91387 0.95628 0.95081 0.91464 0.93560 0.95079 0.97829 0.93004 0.94594 0.88828 0.91802 0.88480 0.85748 0.86244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.89 37.16 0.37 -0.58 16 2 C -0.08 -0.60 6.06 -27.88 -0.17 -0.77 16 3 C -0.08 -0.79 5.13 -104.62 -0.54 -1.33 16 4 C -0.12 -1.18 9.70 -39.59 -0.38 -1.57 16 5 C -0.10 -1.15 9.67 -39.59 -0.38 -1.53 16 6 C -0.08 -1.00 4.98 -104.62 -0.52 -1.52 16 7 C 0.13 1.82 3.01 -27.83 -0.08 1.74 16 8 H 0.08 1.10 8.01 -51.93 -0.42 0.68 16 9 C 0.03 0.46 4.86 -3.71 -0.02 0.44 16 10 N -0.53 -8.41 3.98 -234.30 -0.93 -9.34 16 11 C 0.06 1.01 4.40 -3.83 -0.02 1.00 16 12 C -0.07 -1.41 2.39 -90.62 -0.22 -1.63 16 13 H 0.06 1.23 6.78 -51.93 -0.35 0.87 16 14 C -0.13 -2.44 8.91 37.16 0.33 -2.11 16 15 C 0.00 -0.03 3.46 -27.89 -0.10 -0.12 16 16 C -0.51 -14.47 9.03 -34.44 -0.31 -14.78 16 17 H 0.07 2.11 7.31 -52.49 -0.38 1.73 16 18 C 0.06 1.87 5.47 -17.82 -0.10 1.78 16 19 N -0.91 -28.35 13.96 55.43 0.77 -27.58 16 20 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 21 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 24 C 0.02 0.27 5.47 -3.71 -0.02 0.25 16 25 C 0.06 0.84 7.01 37.21 0.26 1.10 16 26 O -0.38 -5.34 9.78 -35.23 -0.34 -5.69 16 27 C -0.09 -1.01 9.36 -39.58 -0.37 -1.38 16 28 C -0.12 -1.22 9.70 -39.58 -0.38 -1.61 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.45 8.09 -51.92 -0.42 0.03 16 33 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 34 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 35 H 0.12 1.27 8.04 -52.48 -0.42 0.85 16 36 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 1.16 8.02 -51.93 -0.42 0.75 16 38 H 0.07 1.10 7.86 -51.93 -0.41 0.69 16 39 H 0.03 0.38 7.99 -51.92 -0.41 -0.03 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.07 1.37 7.12 -51.93 -0.37 1.00 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.03 0.77 6.64 -51.93 -0.34 0.42 16 44 H 0.00 0.08 7.57 -51.93 -0.39 -0.31 16 45 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 46 H 0.04 0.48 8.13 -51.93 -0.42 0.06 16 47 H 0.09 1.38 6.75 -51.93 -0.35 1.03 16 48 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 50 H 0.12 1.41 7.77 -52.49 -0.41 1.00 16 51 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 398.17 15.07 6.00 6.00 Total: -1.00 -31.51 398.17 -11.16 -42.67 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -9.34 Total: -0.96 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -2.65 Total: -22.63 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: -0.16 Total: -36.92 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.34 Total: -5.69 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.51 -11.16 -42.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602635848.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.578 kcal (2) G-P(sol) polarization free energy of solvation -31.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds