Wall clock time and date at job start Tue Mar 31 2020 11:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.46865 * 2 1 4 4 C 1.38229 * 120.00336 * 90.00428 * 3 2 1 5 5 C 1.38229 * 120.00424 * 179.97438 * 4 3 2 6 6 C 1.38236 * 119.99825 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.99771 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.51129 * 339.91551 * 7 6 5 9 9 C 1.53098 * 109.50573 * 100.00246 * 7 6 5 10 10 N 1.47014 * 109.25958 * 176.82910 * 9 7 6 11 11 C 1.46893 * 111.00395 * 177.60535 * 10 9 7 12 12 C 1.52997 * 109.47395 * 199.38998 * 11 10 9 13 13 H 1.08998 * 109.46937 * 303.93469 * 12 11 10 14 14 C 1.53005 * 109.46958 * 183.94271 * 12 11 10 15 15 C 1.52992 * 109.47162 * 63.94040 * 12 11 10 16 16 C 1.50701 * 109.47339 * 184.99907 * 15 12 11 17 17 H 1.08002 * 119.99817 * 0.02562 * 16 15 12 18 18 C 1.37879 * 120.00419 * 179.97438 * 16 15 12 19 19 N 1.31507 * 120.00036 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99783 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.46819 * 89.99553 * 20 18 16 22 22 H 1.48493 * 109.47081 * 209.99923 * 20 18 16 23 23 H 1.48506 * 109.47226 * 330.00202 * 20 18 16 24 24 C 1.47019 * 110.75038 * 301.38192 * 10 9 7 25 25 C 1.53097 * 109.25943 * 58.61251 * 24 10 9 26 26 O 1.43014 * 109.26185 * 303.15410 * 25 24 10 27 27 C 1.38233 * 120.00319 * 0.27323 * 6 5 4 28 28 C 1.38239 * 119.99758 * 269.97660 * 3 2 1 29 29 H 1.08998 * 109.47081 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47370 * 299.99666 * 1 2 3 31 31 H 1.09001 * 109.47725 * 59.99837 * 1 2 3 32 32 H 1.09008 * 109.47112 * 240.00104 * 2 1 3 33 33 H 1.08999 * 109.47217 * 120.00156 * 2 1 3 34 34 H 1.08007 * 119.99636 * 359.97224 * 4 3 2 35 35 H 1.08006 * 119.99981 * 179.97438 * 5 4 3 36 36 H 1.09002 * 109.50976 * 56.88782 * 9 7 6 37 37 H 1.09007 * 109.50525 * 296.75491 * 9 7 6 38 38 H 1.09002 * 109.47216 * 319.39296 * 11 10 9 39 39 H 1.09008 * 109.47224 * 79.38851 * 11 10 9 40 40 H 1.08997 * 109.47656 * 54.56490 * 14 12 11 41 41 H 1.09004 * 109.46994 * 174.56636 * 14 12 11 42 42 H 1.08999 * 109.47160 * 294.56112 * 14 12 11 43 43 H 1.09001 * 109.47090 * 305.00172 * 15 12 11 44 44 H 1.09000 * 109.47283 * 65.00135 * 15 12 11 45 45 H 0.97005 * 120.00123 * 179.97438 * 19 18 16 46 46 H 1.09004 * 109.50116 * 298.68071 * 24 10 9 47 47 H 1.09000 * 109.50922 * 178.55503 * 24 10 9 48 48 H 1.09000 * 109.50410 * 63.08663 * 25 24 10 49 49 H 1.09003 * 109.50785 * 183.21757 * 25 24 10 50 50 H 1.07992 * 120.00365 * 179.72461 * 27 6 5 51 51 H 1.07998 * 120.00229 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7239 3.3756 1.1971 6 6 2.9552 4.0269 -0.0001 7 6 3.4586 5.4474 -0.0001 8 1 3.2473 5.9085 0.9647 9 6 4.9690 5.4545 -0.2502 10 7 5.4416 6.8446 -0.3248 11 6 6.8982 6.8963 -0.5078 12 6 7.4140 8.2793 -0.1050 13 1 6.8913 9.0436 -0.6800 14 6 8.9152 8.3659 -0.3880 15 6 7.1626 8.5026 1.3875 16 6 7.5576 9.9088 1.7586 17 1 7.9486 10.5765 1.0051 18 6 7.4191 10.3433 3.0598 19 7 7.7634 11.5705 3.3834 20 14 6.7422 9.1886 4.3629 21 1 7.8614 8.4431 4.9931 22 1 6.0266 9.9761 5.3986 23 1 5.8008 8.2284 3.7327 24 6 4.7495 7.5732 -1.3979 25 6 3.2413 7.5448 -1.1364 26 8 2.8055 6.1864 -1.0358 27 6 2.7199 3.3771 -1.1972 28 6 2.2631 2.0723 -1.1972 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5138 0.8900 34 1 2.0823 1.5635 2.1324 35 1 2.9036 3.8848 2.1324 36 1 5.1848 4.9457 -1.1897 37 1 5.4757 4.9412 0.5672 38 1 7.3699 6.1368 0.1157 39 1 7.1398 6.7089 -1.5541 40 1 9.1036 8.1120 -1.4311 41 1 9.2638 9.3800 -0.1922 42 1 9.4475 7.6677 0.2579 43 1 6.1048 8.3533 1.6041 44 1 7.7554 7.7941 1.9659 45 1 7.6655 11.8763 4.2988 46 1 4.9619 7.0982 -2.3558 47 1 5.0961 8.6064 -1.4186 48 1 3.0237 8.0668 -0.2046 49 1 2.7200 8.0343 -1.9590 50 1 2.8963 3.8874 -2.1325 51 1 2.0830 1.5632 -2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602635848.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:34 Heat of formation + Delta-G solvation = -53.798118 kcal Electronic energy + Delta-G solvation = -26835.887449 eV Core-core repulsion = 23312.467962 eV Total energy + Delta-G solvation = -3523.419487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.18435 -39.93380 -38.00697 -35.61805 -35.39982 -34.04895 -32.56700 -31.84731 -30.10471 -29.64245 -28.44355 -25.93336 -25.23623 -24.35471 -23.66843 -23.53791 -21.74135 -21.14120 -20.48773 -18.90342 -17.89580 -17.38148 -16.91494 -16.61654 -16.37673 -16.06193 -15.78724 -15.61075 -15.45058 -15.10869 -15.05410 -14.53053 -14.47416 -14.41829 -14.10788 -14.06333 -13.87205 -13.55242 -13.04558 -12.98895 -12.84396 -12.80376 -12.65126 -12.53480 -12.38439 -12.15194 -12.10256 -11.77550 -11.71193 -11.65288 -11.49578 -11.41125 -11.20032 -11.00265 -10.69657 -10.64560 -9.83048 -9.47939 -9.25205 -8.23026 -6.23069 0.32969 0.49851 1.35525 1.38218 1.51717 2.40407 2.58969 2.79656 2.95818 3.13491 3.74617 3.85372 3.90400 3.96895 3.97093 4.05948 4.11022 4.17531 4.25330 4.28209 4.38337 4.45760 4.52423 4.52795 4.59587 4.59856 4.67185 4.70465 4.71897 4.78597 4.79673 4.86654 4.91395 4.98484 5.06604 5.10126 5.11812 5.13758 5.21555 5.35965 5.39765 5.47364 5.49945 5.61029 5.64212 5.71630 5.72396 5.80016 6.03403 6.08293 6.10321 6.18843 6.39125 6.84671 7.40245 8.93807 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016571 B = 0.002932 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.311284 B = 9548.997129 C =10306.282478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.083 4.083 4 C -0.124 4.124 5 C -0.114 4.114 6 C -0.098 4.098 7 C 0.138 3.862 8 H 0.062 0.938 9 C 0.040 3.960 10 N -0.551 5.551 11 C 0.072 3.928 12 C -0.069 4.069 13 H 0.050 0.950 14 C -0.129 4.129 15 C 0.007 3.993 16 C -0.513 4.513 17 H 0.033 0.967 18 C 0.001 3.999 19 N -0.956 5.956 20 Si 0.944 3.056 21 H -0.270 1.270 22 H -0.288 1.288 23 H -0.249 1.249 24 C 0.021 3.979 25 C 0.065 3.935 26 O -0.386 6.386 27 C -0.099 4.099 28 C -0.126 4.126 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.140 0.860 35 H 0.128 0.872 36 H 0.044 0.956 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.047 0.953 40 H 0.064 0.936 41 H 0.035 0.965 42 H 0.050 0.950 43 H 0.024 0.976 44 H 0.004 0.996 45 H 0.262 0.738 46 H 0.048 0.952 47 H 0.083 0.917 48 H 0.049 0.951 49 H 0.122 0.878 50 H 0.122 0.878 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.498 -24.517 -10.306 29.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.083 4.083 4 C -0.142 4.142 5 C -0.132 4.132 6 C -0.099 4.099 7 C 0.080 3.920 8 H 0.080 0.920 9 C -0.088 4.088 10 N -0.275 5.275 11 C -0.055 4.055 12 C -0.088 4.088 13 H 0.068 0.932 14 C -0.186 4.186 15 C -0.030 4.030 16 C -0.551 4.551 17 H 0.052 0.948 18 C -0.194 4.194 19 N -0.598 5.598 20 Si 0.769 3.231 21 H -0.196 1.196 22 H -0.214 1.214 23 H -0.172 1.172 24 C -0.107 4.107 25 C -0.012 4.012 26 O -0.306 6.306 27 C -0.117 4.117 28 C -0.144 4.144 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.158 0.842 35 H 0.146 0.854 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.043 0.957 44 H 0.023 0.977 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.101 0.899 48 H 0.068 0.932 49 H 0.140 0.860 50 H 0.140 0.860 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.742 -24.260 -9.852 29.571 hybrid contribution 0.520 0.419 0.327 0.743 sum -13.222 -23.841 -9.525 28.878 Atomic orbital electron populations 1.21738 0.94292 1.02425 1.01835 1.20598 0.96448 0.91229 1.03801 1.20242 0.97900 0.97316 0.92879 1.21217 0.99922 0.94326 0.98701 1.21147 0.99068 0.95693 0.97329 1.19548 1.02004 0.93825 0.94495 1.20838 0.90546 0.89464 0.91157 0.92035 1.22676 0.95303 0.89349 1.01493 1.62062 1.05883 1.13287 1.46302 1.22129 0.86285 0.97699 0.99374 1.20911 0.95683 0.95427 0.96824 0.93157 1.21629 0.95408 1.01051 1.00548 1.19411 0.96472 0.93492 0.93624 1.21555 1.40787 0.98340 0.94406 0.94846 1.25932 0.95795 0.96488 1.01203 1.70074 1.51248 1.18900 1.19572 0.85740 0.79478 0.79396 0.78532 1.19564 1.21444 1.17211 1.22800 0.95303 1.00064 0.92525 1.22761 0.93145 0.82581 1.02668 1.87944 1.64011 1.23739 1.54871 1.21038 0.98284 0.94766 0.97589 1.21260 1.00105 0.94411 0.98619 0.91030 0.93039 0.93011 0.90076 0.90104 0.84198 0.85415 0.93756 0.89786 0.90891 0.93526 0.91735 0.94548 0.93121 0.95743 0.97717 0.92892 0.93404 0.89896 0.93226 0.86011 0.86015 0.84369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.89 71.98 0.71 -0.82 16 2 C -0.08 -0.94 6.06 29.85 0.18 -0.76 16 3 C -0.08 -1.38 5.13 -19.87 -0.10 -1.49 16 4 C -0.12 -2.21 9.70 22.27 0.22 -2.00 16 5 C -0.11 -2.43 9.67 22.27 0.22 -2.22 16 6 C -0.10 -2.32 4.98 -19.87 -0.10 -2.42 16 7 C 0.14 3.64 3.01 29.88 0.09 3.73 16 8 H 0.06 1.77 8.01 -2.39 -0.02 1.75 16 9 C 0.04 1.06 4.86 86.31 0.42 1.48 16 10 N -0.55 -16.84 3.98 -895.19 -3.57 -20.41 16 11 C 0.07 2.23 4.40 86.30 0.38 2.60 16 12 C -0.07 -2.66 2.39 -10.80 -0.03 -2.69 16 13 H 0.05 2.03 6.78 -2.39 -0.02 2.01 16 14 C -0.13 -4.61 8.91 71.98 0.64 -3.97 16 15 C 0.01 0.35 3.46 29.85 0.10 0.46 16 16 C -0.51 -29.78 9.03 25.60 0.23 -29.55 16 17 H 0.03 2.13 7.31 -2.91 -0.02 2.10 16 18 C 0.00 0.08 5.47 84.66 0.46 0.55 16 19 N -0.96 -61.25 13.96 21.45 0.30 -60.95 16 20 Si 0.94 46.02 27.47 68.60 1.88 47.91 16 21 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 23 H -0.25 -11.47 6.54 99.48 0.65 -10.82 16 24 C 0.02 0.57 5.47 86.31 0.47 1.05 16 25 C 0.07 1.65 7.01 72.01 0.50 2.16 16 26 O -0.39 -10.50 9.78 -148.98 -1.46 -11.96 16 27 C -0.10 -2.14 9.36 22.27 0.21 -1.93 16 28 C -0.13 -2.26 9.70 22.27 0.22 -2.04 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.08 0.77 8.09 -2.38 -0.02 0.75 16 33 H 0.08 0.77 8.09 -2.39 -0.02 0.76 16 34 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 35 H 0.13 2.52 8.04 -2.91 -0.02 2.50 16 36 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 2.21 8.02 -2.38 -0.02 2.19 16 38 H 0.07 2.18 7.86 -2.39 -0.02 2.16 16 39 H 0.05 1.26 7.99 -2.38 -0.02 1.24 16 40 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.04 1.50 7.12 -2.39 -0.02 1.48 16 42 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.02 1.19 6.64 -2.39 -0.02 1.17 16 44 H 0.00 0.21 7.57 -2.39 -0.02 0.20 16 45 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 46 H 0.05 1.19 8.13 -2.39 -0.02 1.17 16 47 H 0.08 2.42 6.75 -2.39 -0.02 2.40 16 48 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 50 H 0.12 2.62 7.77 -2.91 -0.02 2.60 16 51 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -68.64 398.17 2.80 -65.85 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.81 Total: 17.41 kcal Atomic # 6 Polarization: -42.68 SS G_CDS: 4.83 Total: -37.85 kcal Atomic # 7 Polarization: -78.10 SS G_CDS: -3.27 Total: -81.36 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -1.46 Total: -11.96 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.88 Total: 47.91 kcal Total: -68.64 2.80 -65.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602635848.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.051 kcal (2) G-P(sol) polarization free energy of solvation -68.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds