Wall clock time and date at job start Tue Mar 31 2020 11:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50696 * 109.47379 * 2 1 4 4 C 1.38230 * 120.00309 * 89.99746 * 3 2 1 5 5 C 1.38235 * 120.00326 * 179.97438 * 4 3 2 6 6 C 1.38234 * 119.99814 * 359.97438 * 5 4 3 7 7 C 1.50706 * 120.00196 * 179.97438 * 6 5 4 8 8 H 1.08993 * 109.50208 * 339.91451 * 7 6 5 9 9 C 1.53092 * 109.50369 * 100.00062 * 7 6 5 10 10 N 1.47020 * 109.25879 * 176.78213 * 9 7 6 11 11 C 1.46898 * 111.00239 * 177.60577 * 10 9 7 12 12 C 1.53001 * 109.47098 * 170.00403 * 11 10 9 13 13 H 1.09002 * 109.46970 * 305.00437 * 12 11 10 14 14 C 1.53000 * 109.46976 * 65.00032 * 12 11 10 15 15 C 1.53003 * 109.47016 * 185.00586 * 12 11 10 16 16 C 1.50703 * 109.46863 * 174.99925 * 15 12 11 17 17 H 1.07997 * 119.99671 * 0.02562 * 16 15 12 18 18 C 1.37874 * 119.99849 * 179.97438 * 16 15 12 19 19 N 1.31519 * 119.99828 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00005 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46910 * 60.00648 * 20 18 16 22 22 H 1.48500 * 109.47020 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47432 * 300.00655 * 20 18 16 24 24 C 1.47009 * 110.75192 * 301.39013 * 10 9 7 25 25 C 1.53092 * 109.26160 * 58.61210 * 24 10 9 26 26 O 1.43016 * 109.50535 * 219.78420 * 7 6 5 27 27 C 1.38240 * 120.00061 * 0.07178 * 6 5 4 28 28 C 1.38234 * 120.00081 * 359.88514 * 27 6 5 29 29 H 1.09001 * 109.47484 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47460 * 300.00527 * 1 2 3 31 31 H 1.09001 * 109.47147 * 60.00286 * 1 2 3 32 32 H 1.09003 * 109.47460 * 239.99473 * 2 1 3 33 33 H 1.09001 * 109.47147 * 119.99714 * 2 1 3 34 34 H 1.08000 * 120.00376 * 359.97438 * 4 3 2 35 35 H 1.08000 * 120.00616 * 179.72578 * 5 4 3 36 36 H 1.08997 * 109.51135 * 296.72404 * 9 7 6 37 37 H 1.09000 * 109.50845 * 56.85334 * 9 7 6 38 38 H 1.08996 * 109.47667 * 290.00664 * 11 10 9 39 39 H 1.09007 * 109.46754 * 50.00381 * 11 10 9 40 40 H 1.09004 * 109.46543 * 179.97438 * 14 12 11 41 41 H 1.08998 * 109.47121 * 299.99911 * 14 12 11 42 42 H 1.09002 * 109.46940 * 60.00386 * 14 12 11 43 43 H 1.09002 * 109.46550 * 294.99886 * 15 12 11 44 44 H 1.08994 * 109.47449 * 54.99706 * 15 12 11 45 45 H 0.97006 * 119.99503 * 179.97438 * 19 18 16 46 46 H 1.09000 * 109.50363 * 178.54840 * 24 10 9 47 47 H 1.09002 * 109.50310 * 298.67436 * 24 10 9 48 48 H 1.09005 * 109.51147 * 63.08275 * 25 24 10 49 49 H 1.09003 * 109.50840 * 183.21707 * 25 24 10 50 50 H 1.08005 * 120.00107 * 179.97438 * 27 6 5 51 51 H 1.07999 * 120.00147 * 180.10835 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0724 1.1971 5 6 2.7241 3.3755 1.1971 6 6 2.9555 4.0268 -0.0001 7 6 3.4579 5.4476 -0.0002 8 1 3.2458 5.9086 0.9644 9 6 4.9684 5.4556 -0.2495 10 7 5.4400 6.8461 -0.3254 11 6 6.8967 6.8988 -0.5077 12 6 7.3187 8.3336 -0.8302 13 1 6.7592 8.6912 -1.6947 14 6 7.0285 9.2332 0.3728 15 6 8.8161 8.3667 -1.1426 16 6 9.2075 9.7550 -1.5793 17 1 8.4628 10.5355 -1.6287 18 6 10.5165 10.0287 -1.9148 19 7 11.4234 9.0782 -1.8542 20 14 11.0015 11.7492 -2.4568 21 1 10.7009 12.7141 -1.3687 22 1 12.4549 11.7814 -2.7599 23 1 10.2344 12.1199 -3.6730 24 6 4.7479 7.5730 -1.3995 25 6 3.2396 7.5437 -1.1386 26 8 2.8047 6.1850 -1.0370 27 6 2.7242 3.3754 -1.1973 28 6 2.2637 2.0720 -1.1973 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.0823 1.5636 2.1324 35 1 2.8998 3.8862 2.1323 36 1 5.4751 4.9435 0.5685 37 1 5.1851 4.9462 -1.1884 38 1 7.3896 6.5722 0.4080 39 1 7.1840 6.2421 -1.3289 40 1 7.3296 10.2553 0.1431 41 1 5.9617 9.2096 0.5953 42 1 7.5880 8.8756 1.2372 43 1 9.3795 8.0941 -0.2502 44 1 9.0364 7.6589 -1.9416 45 1 12.3443 9.2707 -2.0907 46 1 5.0936 8.6065 -1.4209 47 1 4.9610 7.0973 -2.3568 48 1 3.0210 8.0664 -0.2074 49 1 2.7183 8.0320 -1.9620 50 1 2.9047 3.8843 -2.1326 51 1 2.0847 1.5625 -2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602635874.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:37 Heat of formation + Delta-G solvation = -53.859869 kcal Electronic energy + Delta-G solvation = -26437.285741 eV Core-core repulsion = 22913.863576 eV Total energy + Delta-G solvation = -3523.422165 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.21912 -39.98418 -38.09755 -35.66103 -35.39863 -33.90103 -32.53920 -31.83834 -30.07395 -29.24895 -28.24176 -26.23846 -25.43931 -24.54072 -23.66359 -23.54201 -21.83542 -21.18301 -20.33437 -18.58795 -17.82580 -17.31396 -16.97653 -16.61993 -16.35060 -16.24385 -16.02386 -15.74435 -15.30911 -15.05788 -14.91338 -14.51584 -14.50476 -14.25387 -14.10879 -14.06094 -13.82430 -13.37181 -13.16962 -12.95204 -12.82608 -12.73122 -12.62187 -12.51847 -12.37816 -12.22533 -12.11797 -11.98182 -11.72991 -11.66102 -11.57665 -11.37563 -11.09253 -11.00280 -10.63171 -10.52980 -9.82085 -9.47857 -9.38151 -8.18134 -6.27608 0.33866 0.50838 1.39850 1.42562 1.50184 2.41059 2.60209 2.78684 2.96284 3.15233 3.75151 3.84659 3.90446 3.96886 4.00126 4.05273 4.10722 4.18313 4.22530 4.30003 4.37632 4.44509 4.50562 4.52908 4.57376 4.59895 4.68710 4.72190 4.78474 4.80800 4.84494 4.89454 4.96960 4.99774 5.07333 5.10485 5.12453 5.22130 5.25617 5.39870 5.42818 5.48226 5.50440 5.51975 5.64442 5.73152 5.77152 5.86075 5.93137 5.99249 6.09496 6.20254 6.28390 6.87947 7.40669 8.93698 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.029149 B = 0.002181 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.340460 B =12832.778600 C =13177.217081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.084 4.084 4 C -0.123 4.123 5 C -0.108 4.108 6 C -0.101 4.101 7 C 0.144 3.856 8 H 0.080 0.920 9 C 0.033 3.967 10 N -0.529 5.529 11 C 0.072 3.928 12 C -0.079 4.079 13 H 0.061 0.939 14 C -0.114 4.114 15 C 0.034 3.966 16 C -0.528 4.528 17 H 0.063 0.937 18 C -0.004 4.004 19 N -0.935 5.935 20 Si 0.962 3.038 21 H -0.266 1.266 22 H -0.286 1.286 23 H -0.268 1.268 24 C 0.009 3.991 25 C 0.069 3.931 26 O -0.391 6.391 27 C -0.104 4.104 28 C -0.130 4.130 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.089 0.911 37 H 0.028 0.972 38 H 0.071 0.929 39 H 0.016 0.984 40 H 0.041 0.959 41 H 0.067 0.933 42 H 0.037 0.963 43 H -0.009 1.009 44 H -0.018 1.018 45 H 0.262 0.738 46 H 0.096 0.904 47 H 0.027 0.973 48 H 0.068 0.932 49 H 0.117 0.883 50 H 0.114 0.886 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.616 -15.044 5.519 28.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C -0.084 4.084 4 C -0.141 4.141 5 C -0.126 4.126 6 C -0.101 4.101 7 C 0.086 3.914 8 H 0.098 0.902 9 C -0.095 4.095 10 N -0.254 5.254 11 C -0.056 4.056 12 C -0.097 4.097 13 H 0.079 0.921 14 C -0.171 4.171 15 C -0.004 4.004 16 C -0.566 4.566 17 H 0.081 0.919 18 C -0.201 4.201 19 N -0.576 5.576 20 Si 0.787 3.213 21 H -0.191 1.191 22 H -0.212 1.212 23 H -0.193 1.193 24 C -0.119 4.119 25 C -0.007 4.007 26 O -0.311 6.311 27 C -0.122 4.122 28 C -0.148 4.148 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.162 0.838 35 H 0.156 0.844 36 H 0.107 0.893 37 H 0.046 0.954 38 H 0.090 0.910 39 H 0.034 0.966 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.057 0.943 43 H 0.009 0.991 44 H 0.000 1.000 45 H 0.070 0.930 46 H 0.114 0.886 47 H 0.046 0.954 48 H 0.086 0.914 49 H 0.135 0.865 50 H 0.132 0.868 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -23.693 -14.927 5.820 28.601 hybrid contribution 1.528 0.568 -1.215 2.033 sum -22.165 -14.358 4.605 26.808 Atomic orbital electron populations 1.21732 0.94173 1.02417 1.01879 1.20600 0.96560 0.91309 1.03707 1.20238 0.97955 0.97257 0.92945 1.21252 0.99810 0.94504 0.98539 1.21177 0.98633 0.95487 0.97350 1.19609 1.01985 0.94153 0.94399 1.20827 0.89537 0.89393 0.91623 0.90222 1.22754 0.96112 0.89493 1.01171 1.62310 1.04779 1.13122 1.45177 1.22089 0.86991 0.96930 0.99548 1.21179 0.96374 0.93742 0.98450 0.92085 1.21510 1.00639 0.98602 0.96360 1.18997 0.91687 0.95457 0.94259 1.21588 0.94162 0.96804 1.44088 0.91884 1.25976 0.96886 1.01297 0.95943 1.70106 1.02610 1.34732 1.50163 0.85544 0.76945 0.79709 0.79118 1.19112 1.21150 1.19258 1.22960 0.95859 1.00710 0.92345 1.22789 0.92111 0.82568 1.03260 1.87966 1.63848 1.24069 1.55190 1.21037 0.98500 0.94873 0.97776 1.21229 1.00380 0.94497 0.98647 0.91087 0.92719 0.93186 0.90496 0.89921 0.83841 0.84363 0.89278 0.95354 0.91039 0.96577 0.93960 0.91453 0.94344 0.99104 0.99953 0.92971 0.88606 0.95434 0.91362 0.86476 0.86761 0.84938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.89 71.98 0.71 -0.77 16 2 C -0.08 -0.96 6.06 29.84 0.18 -0.78 16 3 C -0.08 -1.38 5.13 -19.87 -0.10 -1.49 16 4 C -0.12 -2.00 9.70 22.27 0.22 -1.79 16 5 C -0.11 -2.02 9.67 22.27 0.22 -1.80 16 6 C -0.10 -2.25 4.98 -19.86 -0.10 -2.35 16 7 C 0.14 3.43 3.01 29.88 0.09 3.52 16 8 H 0.08 1.79 8.01 -2.39 -0.02 1.77 16 9 C 0.03 0.88 4.89 86.31 0.42 1.30 16 10 N -0.53 -15.69 4.34 -895.24 -3.88 -19.58 16 11 C 0.07 2.56 4.67 86.30 0.40 2.97 16 12 C -0.08 -3.21 1.82 -10.79 -0.02 -3.23 16 13 H 0.06 2.47 5.95 -2.39 -0.01 2.46 16 14 C -0.11 -4.23 8.69 71.98 0.63 -3.61 16 15 C 0.03 1.78 4.45 29.85 0.13 1.91 16 16 C -0.53 -29.79 8.41 25.60 0.22 -29.58 16 17 H 0.06 3.38 7.05 -2.91 -0.02 3.36 16 18 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 19 N -0.94 -57.50 13.29 21.45 0.28 -57.21 16 20 Si 0.96 44.47 29.54 68.60 2.03 46.50 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 C 0.01 0.26 4.79 86.31 0.41 0.67 16 25 C 0.07 1.57 7.01 72.01 0.50 2.07 16 26 O -0.39 -10.04 9.79 -148.98 -1.46 -11.49 16 27 C -0.10 -2.34 9.36 22.27 0.21 -2.13 16 28 C -0.13 -2.45 9.70 22.27 0.22 -2.24 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.08 0.80 8.09 -2.39 -0.02 0.78 16 33 H 0.08 0.77 8.09 -2.39 -0.02 0.75 16 34 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 35 H 0.14 2.07 8.04 -2.91 -0.02 2.04 16 36 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.02 0.61 8.08 -2.38 -0.02 0.59 16 40 H 0.04 1.67 6.95 -2.38 -0.02 1.65 16 41 H 0.07 2.13 7.31 -2.39 -0.02 2.12 16 42 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 43 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 44 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 45 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 46 H 0.10 2.73 5.49 -2.39 -0.01 2.72 16 47 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 49 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 50 H 0.11 2.73 7.77 -2.91 -0.02 2.71 16 51 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -65.67 398.91 2.63 -63.03 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.87 Total: 15.83 kcal Atomic # 6 Polarization: -41.88 SS G_CDS: 4.80 Total: -37.08 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -3.60 Total: -76.79 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -1.46 Total: -11.49 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -65.67 2.63 -63.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602635874.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.174 kcal (2) G-P(sol) polarization free energy of solvation -65.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds