Wall clock time and date at job start Tue Mar 31 2020 11:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47089 * 2 1 4 4 C 1.38236 * 120.00008 * 90.00222 * 3 2 1 5 5 C 1.38234 * 119.99633 * 179.97438 * 4 3 2 6 6 C 1.38237 * 120.00405 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.00495 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.50326 * 24.91610 * 7 6 5 9 9 C 1.53097 * 109.50595 * 264.78954 * 7 6 5 10 10 N 1.47019 * 109.25587 * 183.21444 * 9 7 6 11 11 C 1.46901 * 110.99780 * 182.39258 * 10 9 7 12 12 C 1.52998 * 109.47326 * 317.19587 * 11 10 9 13 13 H 1.09005 * 109.46863 * 55.47945 * 12 11 10 14 14 C 1.53006 * 109.47350 * 295.48296 * 12 11 10 15 15 C 1.53004 * 109.47326 * 175.48127 * 12 11 10 16 16 C 1.50698 * 109.47005 * 185.00350 * 15 12 11 17 17 H 1.07997 * 120.00232 * 359.97438 * 16 15 12 18 18 C 1.37878 * 119.99907 * 180.28112 * 16 15 12 19 19 N 1.31509 * 119.99899 * 359.71551 * 18 16 15 20 20 Si 1.86803 * 120.00238 * 179.72506 * 18 16 15 21 21 H 1.48501 * 109.47335 * 59.99244 * 20 18 16 22 22 H 1.48498 * 109.47254 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46617 * 299.99424 * 20 18 16 24 24 C 1.47012 * 110.75315 * 58.61565 * 10 9 7 25 25 C 1.53095 * 109.25599 * 301.38300 * 24 10 9 26 26 O 1.43010 * 109.50729 * 145.00437 * 7 6 5 27 27 C 1.38236 * 119.99635 * 0.26218 * 6 5 4 28 28 C 1.38235 * 120.00035 * 359.48576 * 27 6 5 29 29 H 1.08990 * 109.47088 * 59.99910 * 1 2 3 30 30 H 1.08998 * 109.46944 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46865 * 299.99995 * 1 2 3 32 32 H 1.08993 * 109.47207 * 239.99507 * 2 1 3 33 33 H 1.09005 * 109.46907 * 119.99628 * 2 1 3 34 34 H 1.07996 * 120.00305 * 359.97438 * 4 3 2 35 35 H 1.08003 * 120.00198 * 179.97438 * 5 4 3 36 36 H 1.08998 * 109.51370 * 63.28276 * 9 7 6 37 37 H 1.09003 * 109.50851 * 303.14551 * 9 7 6 38 38 H 1.09004 * 109.47105 * 197.19873 * 11 10 9 39 39 H 1.08996 * 109.47443 * 77.19912 * 11 10 9 40 40 H 1.08998 * 109.47206 * 199.52203 * 14 12 11 41 41 H 1.08998 * 109.46838 * 319.52636 * 14 12 11 42 42 H 1.09003 * 109.46688 * 79.51848 * 14 12 11 43 43 H 1.08995 * 109.46895 * 65.00493 * 15 12 11 44 44 H 1.08993 * 109.47187 * 304.99975 * 15 12 11 45 45 H 0.97001 * 120.00336 * 180.02562 * 19 18 16 46 46 H 1.08997 * 109.50424 * 61.32180 * 24 10 9 47 47 H 1.09005 * 109.50507 * 181.40783 * 24 10 9 48 48 H 1.08998 * 109.50823 * 176.78645 * 25 24 10 49 49 H 1.09003 * 109.50745 * 296.91084 * 25 24 10 50 50 H 1.07999 * 120.00041 * 179.72341 * 27 6 5 51 51 H 1.07997 * 120.00255 * 180.25552 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7241 3.3756 1.1971 6 6 2.9544 4.0272 -0.0001 7 6 3.4567 5.4480 -0.0002 8 1 3.9862 5.6469 0.9315 9 6 2.2722 6.4090 -0.1313 10 7 2.7735 7.7889 -0.2084 11 6 1.6639 8.7490 -0.2781 12 6 0.5960 8.2253 -1.2404 13 1 0.2815 7.2297 -0.9272 14 6 1.1743 8.1558 -2.6553 15 6 -0.6088 9.1684 -1.2277 16 6 -1.7087 8.5897 -2.0800 17 1 -1.5629 7.6442 -2.5810 18 6 -2.8988 9.2705 -2.2252 19 7 -3.0762 10.4221 -1.6154 20 14 -4.2594 8.5571 -3.2879 21 1 -4.6661 7.2343 -2.7493 22 1 -5.4269 9.4747 -3.2794 23 1 -3.7669 8.3947 -4.6795 24 6 3.6822 7.9498 -1.3528 25 6 4.8525 6.9734 -1.2094 26 8 4.3447 5.6405 -1.1046 27 6 2.7183 3.3776 -1.1972 28 6 2.2620 2.0727 -1.1972 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.0824 1.5635 2.1325 35 1 2.9037 3.8849 2.1324 36 1 1.6220 6.3061 0.7375 37 1 1.7115 6.1744 -1.0361 38 1 2.0360 9.7091 -0.6359 39 1 1.2292 8.8746 0.7135 40 1 0.3602 8.1249 -3.3794 41 1 1.7911 9.0355 -2.8392 42 1 1.7836 7.2576 -2.7550 43 1 -0.3141 10.1396 -1.6249 44 1 -0.9662 9.2873 -0.2049 45 1 -3.9136 10.9010 -1.7173 46 1 3.1440 7.7399 -2.2771 47 1 4.0607 8.9718 -1.3761 48 1 5.4988 7.0489 -2.0839 49 1 5.4224 7.2174 -0.3129 50 1 2.8940 3.8881 -2.1325 51 1 2.0814 1.5637 -2.1324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602635876.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:40 Heat of formation + Delta-G solvation = -29.094442 kcal Electronic energy + Delta-G solvation = -27249.028125 eV Core-core repulsion = 23726.679870 eV Total energy + Delta-G solvation = -3522.348255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.28630 -39.08899 -36.86273 -34.59828 -33.71518 -31.77115 -31.65509 -30.95360 -29.07404 -27.69171 -26.97500 -24.88323 -24.60277 -22.94169 -22.76291 -22.26811 -20.66528 -20.15865 -18.90143 -16.93769 -16.47074 -16.21557 -15.79581 -15.46590 -15.18813 -14.89173 -14.78562 -14.34193 -14.28465 -14.05209 -13.77467 -13.72612 -13.28466 -13.23285 -12.82143 -12.39639 -12.22935 -12.18400 -11.86072 -11.76064 -11.53264 -11.48286 -11.34928 -11.15571 -10.96916 -10.88846 -10.78956 -10.74214 -10.60880 -10.41018 -10.17756 -9.79407 -9.53789 -9.38358 -9.09735 -8.92623 -8.55314 -8.35429 -7.79144 -6.00046 -4.01835 1.24561 1.40247 3.31996 3.36670 3.39057 3.57626 3.82764 4.15028 4.45338 4.61124 4.71021 4.87085 4.97608 4.99501 5.06739 5.12635 5.18648 5.26018 5.31547 5.35771 5.37370 5.41309 5.48972 5.53031 5.62552 5.69537 5.70327 5.77951 5.81714 5.89845 5.91304 5.96586 6.02543 6.04212 6.06411 6.17647 6.22828 6.36808 6.38800 6.52595 6.56147 6.58052 6.82609 6.96489 6.97919 7.09182 7.19032 7.31074 7.36012 7.65553 7.80259 7.98888 8.42710 9.04027 9.61724 11.11072 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009694 B = 0.003786 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.696814 B = 7394.840569 C = 9549.498238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 C -0.083 4.083 4 C -0.120 4.120 5 C -0.105 4.105 6 C -0.082 4.082 7 C 0.137 3.863 8 H 0.070 0.930 9 C 0.026 3.974 10 N -0.535 5.535 11 C 0.058 3.942 12 C -0.120 4.120 13 H 0.062 0.938 14 C -0.142 4.142 15 C 0.032 3.968 16 C -0.516 4.516 17 H 0.054 0.946 18 C 0.057 3.943 19 N -0.896 5.896 20 Si 0.888 3.112 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.009 4.009 25 C 0.066 3.934 26 O -0.380 6.380 27 C -0.086 4.086 28 C -0.121 4.121 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.083 0.917 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.042 0.958 42 H 0.038 0.962 43 H 0.015 0.985 44 H 0.015 0.985 45 H 0.260 0.740 46 H 0.072 0.928 47 H 0.080 0.920 48 H 0.094 0.906 49 H 0.054 0.946 50 H 0.126 0.874 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.869 -15.649 4.034 21.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.083 4.083 4 C -0.138 4.138 5 C -0.123 4.123 6 C -0.083 4.083 7 C 0.079 3.921 8 H 0.088 0.912 9 C -0.102 4.102 10 N -0.258 5.258 11 C -0.070 4.070 12 C -0.140 4.140 13 H 0.080 0.920 14 C -0.199 4.199 15 C -0.006 4.006 16 C -0.554 4.554 17 H 0.072 0.928 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.716 3.284 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.137 4.137 25 C -0.011 4.011 26 O -0.299 6.299 27 C -0.104 4.104 28 C -0.139 4.139 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.033 0.967 44 H 0.033 0.967 45 H 0.070 0.930 46 H 0.090 0.910 47 H 0.098 0.902 48 H 0.112 0.888 49 H 0.072 0.928 50 H 0.144 0.856 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 15.063 -15.537 4.369 22.077 hybrid contribution -1.428 -0.062 -1.133 1.823 sum 13.636 -15.599 3.236 20.970 Atomic orbital electron populations 1.21759 0.94625 1.01594 1.02562 1.20536 0.96272 0.92714 1.02605 1.19908 0.98908 0.96234 0.93288 1.20915 1.00695 0.94745 0.97477 1.20911 0.99513 0.94621 0.97246 1.19557 1.00495 0.94533 0.93715 1.20888 0.90240 0.90915 0.90079 0.91176 1.22792 0.96182 0.88361 1.02877 1.62548 1.18435 1.03904 1.40957 1.22411 0.89951 0.94485 1.00115 1.21842 0.97108 1.01112 0.93949 0.91968 1.22093 1.00352 0.98744 0.98713 1.19055 0.90624 0.93906 0.97018 1.21186 0.98985 1.05915 1.29332 0.92806 1.25002 0.98480 0.94932 0.95938 1.69948 1.25602 1.14587 1.43378 0.86716 0.81639 0.78958 0.81052 1.20285 1.21282 1.20297 1.23314 0.95140 1.00120 0.95150 1.22654 0.95061 0.81697 1.01665 1.87952 1.63302 1.29276 1.49341 1.20996 0.97011 0.94290 0.98131 1.21028 1.00380 0.94983 0.97496 0.92368 0.92515 0.92442 0.91173 0.91202 0.86133 0.85944 0.89861 0.92250 0.91306 0.90887 0.91262 0.93917 0.94321 0.96658 0.96678 0.92989 0.91017 0.90174 0.88774 0.92812 0.85585 0.86198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.89 37.16 0.37 -0.86 16 2 C -0.08 -0.70 6.06 -27.88 -0.17 -0.87 16 3 C -0.08 -0.89 5.13 -104.62 -0.54 -1.43 16 4 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 5 C -0.10 -1.20 9.68 -39.58 -0.38 -1.59 16 6 C -0.08 -1.07 5.01 -104.62 -0.52 -1.59 16 7 C 0.14 1.82 3.02 -27.83 -0.08 1.74 16 8 H 0.07 0.90 8.05 -51.93 -0.42 0.48 16 9 C 0.03 0.39 3.80 -3.71 -0.01 0.38 16 10 N -0.53 -8.05 4.94 -234.31 -1.16 -9.21 16 11 C 0.06 0.99 5.18 -3.82 -0.02 0.97 16 12 C -0.12 -2.42 1.81 -90.62 -0.16 -2.58 16 13 H 0.06 1.30 6.11 -51.93 -0.32 0.98 16 14 C -0.14 -2.66 7.41 37.16 0.28 -2.39 16 15 C 0.03 0.80 4.45 -27.88 -0.12 0.68 16 16 C -0.52 -14.40 8.13 -34.44 -0.28 -14.68 16 17 H 0.05 1.47 7.24 -52.49 -0.38 1.09 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 20 Si 0.89 21.73 29.54 -169.99 -5.02 16.70 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C -0.01 -0.12 4.95 -3.71 -0.02 -0.14 16 25 C 0.07 0.78 7.01 37.21 0.26 1.04 16 26 O -0.38 -5.22 9.63 -35.23 -0.34 -5.56 16 27 C -0.09 -1.12 9.35 -39.58 -0.37 -1.49 16 28 C -0.12 -1.39 9.70 -39.58 -0.38 -1.78 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 33 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 34 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 0.99 5.21 -51.93 -0.27 0.72 16 38 H 0.07 1.17 7.74 -51.93 -0.40 0.76 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.07 1.46 6.64 -51.93 -0.34 1.11 16 41 H 0.04 0.75 7.37 -51.93 -0.38 0.36 16 42 H 0.04 0.66 5.17 -51.93 -0.27 0.39 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.07 1.05 3.88 -51.93 -0.20 0.84 16 47 H 0.08 1.00 8.01 -51.93 -0.42 0.58 16 48 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.13 1.66 7.64 -52.49 -0.40 1.26 16 51 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 389.44 15.07 5.87 5.87 Total: -1.00 -30.24 389.44 -11.41 -41.66 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -8.85 Total: 1.39 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: -2.65 Total: -24.71 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: -0.42 Total: -35.35 kcal Atomic # 8 Polarization: -5.22 SS G_CDS: -0.34 Total: -5.56 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.24 -11.41 -41.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602635876.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.562 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds