Wall clock time and date at job start Tue Mar 31 2020 11:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47089 * 2 1 4 4 C 1.38236 * 120.00008 * 90.00222 * 3 2 1 5 5 C 1.38234 * 119.99633 * 179.97438 * 4 3 2 6 6 C 1.38237 * 120.00405 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.00495 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.50326 * 24.91610 * 7 6 5 9 9 C 1.53097 * 109.50595 * 264.78954 * 7 6 5 10 10 N 1.47019 * 109.25587 * 183.21444 * 9 7 6 11 11 C 1.46901 * 110.99780 * 182.39258 * 10 9 7 12 12 C 1.52998 * 109.47326 * 317.19587 * 11 10 9 13 13 H 1.09005 * 109.46863 * 55.47945 * 12 11 10 14 14 C 1.53006 * 109.47350 * 295.48296 * 12 11 10 15 15 C 1.53004 * 109.47326 * 175.48127 * 12 11 10 16 16 C 1.50698 * 109.47005 * 185.00350 * 15 12 11 17 17 H 1.07997 * 120.00232 * 359.97438 * 16 15 12 18 18 C 1.37878 * 119.99907 * 180.28112 * 16 15 12 19 19 N 1.31509 * 119.99899 * 359.71551 * 18 16 15 20 20 Si 1.86803 * 120.00238 * 179.72506 * 18 16 15 21 21 H 1.48501 * 109.47335 * 59.99244 * 20 18 16 22 22 H 1.48498 * 109.47254 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46617 * 299.99424 * 20 18 16 24 24 C 1.47012 * 110.75315 * 58.61565 * 10 9 7 25 25 C 1.53095 * 109.25599 * 301.38300 * 24 10 9 26 26 O 1.43010 * 109.50729 * 145.00437 * 7 6 5 27 27 C 1.38236 * 119.99635 * 0.26218 * 6 5 4 28 28 C 1.38235 * 120.00035 * 359.48576 * 27 6 5 29 29 H 1.08990 * 109.47088 * 59.99910 * 1 2 3 30 30 H 1.08998 * 109.46944 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46865 * 299.99995 * 1 2 3 32 32 H 1.08993 * 109.47207 * 239.99507 * 2 1 3 33 33 H 1.09005 * 109.46907 * 119.99628 * 2 1 3 34 34 H 1.07996 * 120.00305 * 359.97438 * 4 3 2 35 35 H 1.08003 * 120.00198 * 179.97438 * 5 4 3 36 36 H 1.08998 * 109.51370 * 63.28276 * 9 7 6 37 37 H 1.09003 * 109.50851 * 303.14551 * 9 7 6 38 38 H 1.09004 * 109.47105 * 197.19873 * 11 10 9 39 39 H 1.08996 * 109.47443 * 77.19912 * 11 10 9 40 40 H 1.08998 * 109.47206 * 199.52203 * 14 12 11 41 41 H 1.08998 * 109.46838 * 319.52636 * 14 12 11 42 42 H 1.09003 * 109.46688 * 79.51848 * 14 12 11 43 43 H 1.08995 * 109.46895 * 65.00493 * 15 12 11 44 44 H 1.08993 * 109.47187 * 304.99975 * 15 12 11 45 45 H 0.97001 * 120.00336 * 180.02562 * 19 18 16 46 46 H 1.08997 * 109.50424 * 61.32180 * 24 10 9 47 47 H 1.09005 * 109.50507 * 181.40783 * 24 10 9 48 48 H 1.08998 * 109.50823 * 176.78645 * 25 24 10 49 49 H 1.09003 * 109.50745 * 296.91084 * 25 24 10 50 50 H 1.07999 * 120.00041 * 179.72341 * 27 6 5 51 51 H 1.07997 * 120.00255 * 180.25552 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7241 3.3756 1.1971 6 6 2.9544 4.0272 -0.0001 7 6 3.4567 5.4480 -0.0002 8 1 3.9862 5.6469 0.9315 9 6 2.2722 6.4090 -0.1313 10 7 2.7735 7.7889 -0.2084 11 6 1.6639 8.7490 -0.2781 12 6 0.5960 8.2253 -1.2404 13 1 0.2815 7.2297 -0.9272 14 6 1.1743 8.1558 -2.6553 15 6 -0.6088 9.1684 -1.2277 16 6 -1.7087 8.5897 -2.0800 17 1 -1.5629 7.6442 -2.5810 18 6 -2.8988 9.2705 -2.2252 19 7 -3.0762 10.4221 -1.6154 20 14 -4.2594 8.5571 -3.2879 21 1 -4.6661 7.2343 -2.7493 22 1 -5.4269 9.4747 -3.2794 23 1 -3.7669 8.3947 -4.6795 24 6 3.6822 7.9498 -1.3528 25 6 4.8525 6.9734 -1.2094 26 8 4.3447 5.6405 -1.1046 27 6 2.7183 3.3776 -1.1972 28 6 2.2620 2.0727 -1.1972 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.0824 1.5635 2.1325 35 1 2.9037 3.8849 2.1324 36 1 1.6220 6.3061 0.7375 37 1 1.7115 6.1744 -1.0361 38 1 2.0360 9.7091 -0.6359 39 1 1.2292 8.8746 0.7135 40 1 0.3602 8.1249 -3.3794 41 1 1.7911 9.0355 -2.8392 42 1 1.7836 7.2576 -2.7550 43 1 -0.3141 10.1396 -1.6249 44 1 -0.9662 9.2873 -0.2049 45 1 -3.9136 10.9010 -1.7173 46 1 3.1440 7.7399 -2.2771 47 1 4.0607 8.9718 -1.3761 48 1 5.4988 7.0489 -2.0839 49 1 5.4224 7.2174 -0.3129 50 1 2.8940 3.8881 -2.1325 51 1 2.0814 1.5637 -2.1324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602635876.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:40 Heat of formation + Delta-G solvation = -45.104097 kcal Electronic energy + Delta-G solvation = -27249.722356 eV Core-core repulsion = 23726.679870 eV Total energy + Delta-G solvation = -3523.042486 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.36276 -40.06804 -38.17895 -35.56188 -35.36974 -33.63495 -32.58027 -31.82356 -30.09836 -29.11161 -28.68806 -26.31547 -25.62573 -24.37552 -23.64308 -23.47659 -21.67859 -21.25705 -20.45708 -18.58959 -17.77104 -17.40762 -16.89175 -16.65378 -16.43904 -16.20781 -15.88116 -15.70454 -15.59705 -15.25387 -14.72943 -14.51067 -14.45114 -14.14567 -14.09892 -13.92522 -13.69683 -13.49948 -13.19912 -13.06263 -12.82837 -12.68218 -12.59376 -12.50814 -12.28107 -12.24500 -12.19018 -11.96303 -11.76209 -11.65610 -11.51840 -11.46158 -11.19299 -11.10125 -10.65541 -10.55719 -9.80851 -9.44908 -9.13782 -8.20111 -6.30022 0.35845 0.51995 1.36512 1.38607 1.46577 2.38542 2.63982 2.84755 2.99755 3.12431 3.79382 3.90758 3.92300 3.94388 4.00460 4.09675 4.12425 4.19327 4.25993 4.31048 4.33215 4.40946 4.49237 4.52894 4.60031 4.60804 4.70010 4.71740 4.72831 4.80102 4.84712 4.87944 4.91286 5.06927 5.08315 5.09426 5.13987 5.18141 5.23076 5.27914 5.39424 5.42875 5.49127 5.51742 5.65187 5.71684 5.73754 5.83552 5.97114 6.05451 6.11107 6.23783 6.26119 6.84920 7.38117 8.90879 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009694 B = 0.003786 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.696814 B = 7394.840569 C = 9549.498238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.086 4.086 4 C -0.124 4.124 5 C -0.111 4.111 6 C -0.101 4.101 7 C 0.146 3.854 8 H 0.078 0.922 9 C 0.031 3.969 10 N -0.529 5.529 11 C 0.068 3.932 12 C -0.108 4.108 13 H 0.052 0.948 14 C -0.131 4.131 15 C 0.038 3.962 16 C -0.532 4.532 17 H 0.055 0.945 18 C 0.002 3.998 19 N -0.932 5.932 20 Si 0.956 3.044 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.268 1.268 24 C -0.012 4.012 25 C 0.067 3.933 26 O -0.391 6.391 27 C -0.104 4.104 28 C -0.131 4.131 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.144 0.856 35 H 0.138 0.862 36 H 0.076 0.924 37 H 0.038 0.962 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.042 0.958 41 H 0.054 0.946 42 H 0.057 0.943 43 H -0.008 1.008 44 H -0.012 1.012 45 H 0.263 0.737 46 H 0.060 0.940 47 H 0.094 0.906 48 H 0.118 0.882 49 H 0.064 0.936 50 H 0.116 0.884 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.781 -17.456 4.008 23.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.086 4.086 4 C -0.142 4.142 5 C -0.129 4.129 6 C -0.101 4.101 7 C 0.088 3.912 8 H 0.096 0.904 9 C -0.098 4.098 10 N -0.252 5.252 11 C -0.060 4.060 12 C -0.128 4.128 13 H 0.070 0.930 14 C -0.187 4.187 15 C 0.001 3.999 16 C -0.570 4.570 17 H 0.073 0.927 18 C -0.195 4.195 19 N -0.573 5.573 20 Si 0.781 3.219 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.193 1.193 24 C -0.140 4.140 25 C -0.010 4.010 26 O -0.310 6.310 27 C -0.122 4.122 28 C -0.149 4.149 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.162 0.838 35 H 0.156 0.844 36 H 0.095 0.905 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.011 0.989 44 H 0.006 0.994 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.112 0.888 48 H 0.136 0.864 49 H 0.082 0.918 50 H 0.134 0.866 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 15.994 -17.356 4.338 23.997 hybrid contribution -1.692 0.485 -1.101 2.076 sum 14.302 -16.871 3.237 22.353 Atomic orbital electron populations 1.21753 0.94648 1.02399 1.01674 1.20582 0.96101 0.91320 1.03866 1.20244 0.98027 0.97397 0.92952 1.21251 0.99877 0.94529 0.98528 1.21161 0.99232 0.95160 0.97373 1.19648 1.01617 0.94540 0.94340 1.20798 0.89389 0.90747 0.90299 0.90403 1.22741 0.96879 0.88640 1.01517 1.62571 1.17305 1.03498 1.41837 1.22214 0.89815 0.95201 0.98786 1.21663 0.96088 0.99192 0.95871 0.92955 1.21976 0.99699 1.00289 0.96760 1.18925 0.92351 0.93945 0.94714 1.21566 0.99937 1.06014 1.29505 0.92716 1.25887 1.01121 0.95258 0.97264 1.70076 1.26412 1.15955 1.44836 0.85636 0.78449 0.78370 0.79445 1.19466 1.20708 1.19296 1.23411 0.95218 1.01607 0.93727 1.22807 0.94486 0.80356 1.03332 1.87955 1.63258 1.30298 1.49534 1.21038 0.98136 0.95116 0.97886 1.21242 1.00336 0.94668 0.98643 0.93588 0.90892 0.92995 0.90259 0.89633 0.83833 0.84428 0.90521 0.94370 0.90776 0.91588 0.93888 0.92675 0.92430 0.98946 0.99382 0.92833 0.92168 0.88767 0.86389 0.91764 0.86612 0.85003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.89 71.98 0.71 -1.48 16 2 C -0.08 -1.17 6.06 29.85 0.18 -0.99 16 3 C -0.09 -1.71 5.13 -19.87 -0.10 -1.81 16 4 C -0.12 -2.42 9.70 22.27 0.22 -2.21 16 5 C -0.11 -2.43 9.68 22.27 0.22 -2.21 16 6 C -0.10 -2.56 5.01 -19.87 -0.10 -2.66 16 7 C 0.15 3.76 3.02 29.88 0.09 3.85 16 8 H 0.08 1.88 8.05 -2.39 -0.02 1.86 16 9 C 0.03 0.91 3.80 86.31 0.33 1.24 16 10 N -0.53 -15.50 4.94 -895.21 -4.42 -19.92 16 11 C 0.07 2.33 5.18 86.30 0.45 2.78 16 12 C -0.11 -4.45 1.81 -10.79 -0.02 -4.47 16 13 H 0.05 2.25 6.11 -2.38 -0.01 2.23 16 14 C -0.13 -4.90 7.41 71.98 0.53 -4.37 16 15 C 0.04 2.02 4.45 29.85 0.13 2.15 16 16 C -0.53 -30.40 8.13 25.60 0.21 -30.19 16 17 H 0.05 3.05 7.24 -2.91 -0.02 3.03 16 18 C 0.00 0.14 5.46 84.66 0.46 0.60 16 19 N -0.93 -57.10 13.29 21.45 0.28 -56.82 16 20 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 24 C -0.01 -0.30 4.95 86.31 0.43 0.12 16 25 C 0.07 1.43 7.01 72.01 0.50 1.94 16 26 O -0.39 -10.26 9.63 -148.98 -1.43 -11.70 16 27 C -0.10 -2.68 9.35 22.27 0.21 -2.47 16 28 C -0.13 -2.94 9.70 22.27 0.22 -2.72 16 29 H 0.04 0.78 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.08 1.01 8.09 -2.39 -0.02 0.99 16 33 H 0.09 0.98 8.09 -2.38 -0.02 0.96 16 34 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 35 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 36 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.04 1.30 5.21 -2.39 -0.01 1.28 16 38 H 0.07 2.48 7.74 -2.39 -0.02 2.46 16 39 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.04 1.83 6.64 -2.39 -0.02 1.81 16 41 H 0.05 1.90 7.37 -2.39 -0.02 1.89 16 42 H 0.06 1.95 5.17 -2.39 -0.01 1.94 16 43 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 44 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 45 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 46 H 0.06 1.67 3.88 -2.39 -0.01 1.66 16 47 H 0.09 2.12 8.01 -2.38 -0.02 2.11 16 48 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 49 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.12 3.12 7.64 -2.91 -0.02 3.10 16 51 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -65.78 389.44 2.00 -63.78 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.88 Total: 20.69 kcal Atomic # 6 Polarization: -47.56 SS G_CDS: 4.66 Total: -42.90 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -4.13 Total: -76.74 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -1.43 Total: -11.70 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -65.78 2.00 -63.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602635876.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.677 kcal (2) G-P(sol) polarization free energy of solvation -65.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds