Wall clock time and date at job start Tue Mar 31 2020 11:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.46944 * 2 1 4 4 C 1.38235 * 120.00197 * 90.00180 * 3 2 1 5 5 C 1.38236 * 120.00209 * 179.97438 * 4 3 2 6 6 C 1.38238 * 119.99979 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99991 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.53911 * 25.11363 * 7 6 5 9 9 C 1.53091 * 109.51153 * 265.00370 * 7 6 5 10 10 N 1.47009 * 109.26191 * 183.21899 * 9 7 6 11 11 C 1.46897 * 111.00480 * 182.39326 * 10 9 7 12 12 C 1.52996 * 109.47237 * 75.76586 * 11 10 9 13 13 H 1.08996 * 109.47582 * 305.26562 * 12 11 10 14 14 C 1.53007 * 109.46812 * 65.26422 * 12 11 10 15 15 C 1.53000 * 109.47259 * 185.26076 * 12 11 10 16 16 C 1.50703 * 109.47224 * 175.00434 * 15 12 11 17 17 H 1.07998 * 120.00116 * 359.97438 * 16 15 12 18 18 C 1.37871 * 120.00212 * 180.02562 * 16 15 12 19 19 N 1.31524 * 119.99806 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00391 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46661 * 59.99703 * 20 18 16 22 22 H 1.48498 * 109.47079 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46908 * 299.99913 * 20 18 16 24 24 C 1.47011 * 110.75159 * 58.61308 * 10 9 7 25 25 C 1.53105 * 109.26026 * 301.38559 * 24 10 9 26 26 O 1.43010 * 109.25471 * 56.84837 * 25 24 10 27 27 C 1.38232 * 119.99837 * 0.25435 * 6 5 4 28 28 C 1.38232 * 120.00017 * 270.02085 * 3 2 1 29 29 H 1.09002 * 109.47140 * 59.99902 * 1 2 3 30 30 H 1.08998 * 109.46968 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46906 * 299.99623 * 1 2 3 32 32 H 1.09003 * 109.47323 * 240.00170 * 2 1 3 33 33 H 1.08997 * 109.47379 * 119.99705 * 2 1 3 34 34 H 1.07995 * 119.99744 * 0.02562 * 4 3 2 35 35 H 1.07998 * 120.00182 * 180.02562 * 5 4 3 36 36 H 1.08999 * 109.50924 * 63.27809 * 9 7 6 37 37 H 1.09007 * 109.50580 * 303.15568 * 9 7 6 38 38 H 1.09005 * 109.46658 * 315.77040 * 11 10 9 39 39 H 1.08992 * 109.47360 * 195.76985 * 11 10 9 40 40 H 1.08997 * 109.47179 * 65.00851 * 14 12 11 41 41 H 1.09003 * 109.46790 * 185.01096 * 14 12 11 42 42 H 1.09002 * 109.46774 * 305.00654 * 14 12 11 43 43 H 1.09000 * 109.47057 * 295.00229 * 15 12 11 44 44 H 1.09005 * 109.46920 * 55.00644 * 15 12 11 45 45 H 0.97000 * 119.99894 * 180.02562 * 19 18 16 46 46 H 1.08993 * 109.51184 * 61.32302 * 24 10 9 47 47 H 1.09000 * 109.50721 * 181.45579 * 24 10 9 48 48 H 1.09004 * 109.50495 * 296.91634 * 25 24 10 49 49 H 1.08994 * 109.50670 * 176.78806 * 25 24 10 50 50 H 1.08004 * 119.99935 * 179.72950 * 27 6 5 51 51 H 1.08005 * 120.00287 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7239 3.3756 1.1971 6 6 2.9543 4.0273 0.0000 7 6 3.4566 5.4481 0.0000 8 1 3.9892 5.6465 0.9301 9 6 2.2717 6.4094 -0.1257 10 7 2.7727 7.7893 -0.2028 11 6 1.6629 8.7496 -0.2674 12 6 1.0349 8.8972 1.1199 13 1 0.7437 7.9154 1.4933 14 6 2.0512 9.5255 2.0756 15 6 -0.2008 9.7947 1.0275 16 6 -0.8892 9.8413 2.3673 17 1 -0.4860 9.2859 3.2012 18 6 -2.0343 10.5920 2.5282 19 7 -2.5256 11.2680 1.5126 20 14 -2.8881 10.6493 4.1887 21 1 -1.9548 11.1956 5.2065 22 1 -4.0873 11.5205 4.0990 23 1 -3.3003 9.2776 4.5808 24 6 3.6773 7.9516 -1.3502 25 6 4.8483 6.9749 -1.2123 26 8 4.3408 5.6420 -1.1073 27 6 2.7184 3.3776 -1.1971 28 6 2.2622 2.0726 -1.1971 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.0831 1.5633 2.1324 35 1 2.9044 3.8846 2.1324 36 1 1.6246 6.3052 0.7452 37 1 1.7077 6.1758 -1.0288 38 1 0.9114 8.3895 -0.9700 39 1 2.0384 9.7168 -0.6010 40 1 2.2753 10.5416 1.7510 41 1 1.6361 9.5490 3.0832 42 1 2.9663 8.9332 2.0734 43 1 0.1021 10.8014 0.7395 44 1 -0.8861 9.3937 0.2806 45 1 -3.3311 11.7965 1.6259 46 1 3.1360 7.7428 -2.2729 47 1 4.0564 8.9733 -1.3731 48 1 5.4213 7.2178 -0.3174 49 1 5.4914 7.0516 -2.0889 50 1 2.8942 3.8882 -2.1325 51 1 2.0815 1.5638 -2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602635879.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:43 Heat of formation + Delta-G solvation = -42.124835 kcal Electronic energy + Delta-G solvation = -26725.096594 eV Core-core repulsion = 23202.183299 eV Total energy + Delta-G solvation = -3522.913295 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.20829 -38.98147 -36.58183 -34.66571 -34.03062 -31.97921 -31.70178 -31.00551 -29.00771 -27.66405 -26.62562 -24.87355 -24.48944 -23.06480 -22.80352 -22.27398 -20.73608 -20.16883 -18.90429 -16.98281 -16.45942 -16.27552 -15.85451 -15.50042 -15.21258 -14.89779 -14.73131 -14.46019 -14.19380 -13.89942 -13.76311 -13.63992 -13.49522 -13.33016 -12.91994 -12.53637 -12.34457 -12.20275 -11.94728 -11.68690 -11.53789 -11.41610 -11.33654 -11.25230 -11.00266 -10.92274 -10.84819 -10.74160 -10.51288 -10.35219 -10.29017 -9.72843 -9.61797 -9.11671 -8.98002 -8.96099 -8.59815 -8.31772 -8.11868 -5.96799 -3.97958 1.19316 1.35054 3.34852 3.39150 3.41630 3.51343 3.75796 4.02249 4.48877 4.56161 4.66256 4.80477 4.91221 4.93336 4.99265 5.05283 5.13663 5.16919 5.24098 5.32343 5.32595 5.38989 5.43137 5.47516 5.57391 5.65082 5.70092 5.73816 5.78675 5.84457 5.88377 5.94791 5.98142 5.99657 6.06711 6.15300 6.33685 6.36283 6.50663 6.51863 6.52422 6.69196 6.91322 6.98643 7.07027 7.14337 7.18737 7.30074 7.36527 7.69666 7.85779 8.03253 8.47412 9.08162 9.65381 11.14757 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.010679 B = 0.003161 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.322944 B = 8854.802994 C =10779.887701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 C -0.083 4.083 4 C -0.119 4.119 5 C -0.102 4.102 6 C -0.083 4.083 7 C 0.137 3.863 8 H 0.075 0.925 9 C 0.031 3.969 10 N -0.533 5.533 11 C 0.061 3.939 12 C -0.078 4.078 13 H 0.054 0.946 14 C -0.122 4.122 15 C 0.027 3.973 16 C -0.512 4.512 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.890 3.110 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.015 3.985 25 C 0.067 3.933 26 O -0.381 6.381 27 C -0.089 4.089 28 C -0.122 4.122 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.091 0.909 37 H 0.040 0.960 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.039 0.961 41 H 0.051 0.949 42 H 0.042 0.958 43 H 0.015 0.985 44 H 0.012 0.988 45 H 0.260 0.740 46 H 0.038 0.962 47 H 0.085 0.915 48 H 0.059 0.941 49 H 0.095 0.905 50 H 0.125 0.875 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.401 -18.567 -5.875 23.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C -0.083 4.083 4 C -0.137 4.137 5 C -0.121 4.121 6 C -0.084 4.084 7 C 0.079 3.921 8 H 0.093 0.907 9 C -0.097 4.097 10 N -0.258 5.258 11 C -0.066 4.066 12 C -0.097 4.097 13 H 0.073 0.927 14 C -0.179 4.179 15 C -0.010 4.010 16 C -0.550 4.550 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.113 4.113 25 C -0.010 4.010 26 O -0.300 6.300 27 C -0.107 4.107 28 C -0.140 4.140 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.110 0.890 37 H 0.059 0.941 38 H 0.050 0.950 39 H 0.087 0.913 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.034 0.966 44 H 0.030 0.970 45 H 0.069 0.931 46 H 0.057 0.943 47 H 0.103 0.897 48 H 0.077 0.923 49 H 0.113 0.887 50 H 0.143 0.857 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 13.567 -18.483 -5.633 23.609 hybrid contribution -1.184 0.340 0.254 1.257 sum 12.383 -18.143 -5.379 22.615 Atomic orbital electron populations 1.21758 0.94638 1.01619 1.02496 1.20539 0.96260 0.92706 1.02658 1.19913 0.98890 0.96232 0.93283 1.20946 1.00474 0.94735 0.97548 1.20959 0.99117 0.94591 0.97393 1.19554 1.00546 0.94520 0.93735 1.20887 0.90190 0.90801 0.90196 0.90728 1.22752 0.96301 0.88236 1.02391 1.62260 1.19221 1.03644 1.40632 1.22354 0.90617 0.94416 0.99218 1.21176 0.96592 0.99926 0.91977 0.92742 1.21575 0.97623 0.99142 0.99580 1.19130 0.90743 0.94137 0.97003 1.21189 1.09091 1.28357 0.96395 0.92646 1.25018 0.97311 0.95704 0.96497 1.69960 1.22349 1.31038 1.30395 0.86694 0.79009 0.77927 0.84596 1.20258 1.21374 1.20301 1.22796 0.95192 1.00560 0.92764 1.22646 0.94867 0.81504 1.02020 1.87947 1.63613 1.29282 1.49157 1.20971 0.97345 0.94349 0.98024 1.21009 1.00613 0.94955 0.97458 0.92480 0.92489 0.92386 0.91183 0.91128 0.86022 0.85722 0.89038 0.94144 0.94974 0.91256 0.94193 0.92978 0.93869 0.96624 0.97010 0.93057 0.94339 0.89703 0.92291 0.88664 0.85709 0.86254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.89 37.16 0.37 -0.76 16 2 C -0.08 -0.65 6.06 -27.88 -0.17 -0.82 16 3 C -0.08 -0.84 5.13 -104.63 -0.54 -1.38 16 4 C -0.12 -1.24 9.70 -39.58 -0.38 -1.62 16 5 C -0.10 -1.17 9.68 -39.58 -0.38 -1.55 16 6 C -0.08 -1.03 5.01 -104.62 -0.52 -1.56 16 7 C 0.14 1.78 3.01 -27.84 -0.08 1.69 16 8 H 0.07 0.96 8.05 -51.93 -0.42 0.54 16 9 C 0.03 0.46 4.74 -3.72 -0.02 0.44 16 10 N -0.53 -7.97 4.04 -234.32 -0.95 -8.92 16 11 C 0.06 1.06 4.39 -3.83 -0.02 1.05 16 12 C -0.08 -1.60 2.39 -90.62 -0.22 -1.81 16 13 H 0.05 1.15 6.74 -51.93 -0.35 0.80 16 14 C -0.12 -2.36 8.87 37.16 0.33 -2.03 16 15 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 16 C -0.51 -14.39 8.47 -34.44 -0.29 -14.69 16 17 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -27.12 13.29 55.43 0.74 -26.39 16 20 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C 0.02 0.19 5.60 -3.71 -0.02 0.17 16 25 C 0.07 0.74 7.01 37.21 0.26 1.00 16 26 O -0.38 -4.96 9.62 -35.23 -0.34 -5.30 16 27 C -0.09 -1.06 9.35 -39.58 -0.37 -1.43 16 28 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 32 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 33 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 34 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 35 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.09 1.42 6.74 -51.93 -0.35 1.07 16 37 H 0.04 0.62 8.13 -51.93 -0.42 0.19 16 38 H 0.03 0.58 7.99 -51.93 -0.41 0.17 16 39 H 0.07 1.19 7.86 -51.93 -0.41 0.78 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.05 1.07 7.10 -51.93 -0.37 0.70 16 42 H 0.04 0.75 7.63 -51.93 -0.40 0.35 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.08 0.98 8.02 -51.93 -0.42 0.56 16 48 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.12 1.47 7.63 -52.48 -0.40 1.07 16 51 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 LS Contribution 401.62 15.07 6.05 6.05 Total: -1.00 -30.61 401.62 -11.55 -42.16 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -9.36 Total: -1.48 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -2.66 Total: -22.91 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: -0.21 Total: -35.30 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.34 Total: -5.30 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.61 -11.55 -42.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602635879.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.035 kcal (2) G-P(sol) polarization free energy of solvation -30.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds