Wall clock time and date at job start Tue Mar 31 2020 11:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47247 * 2 1 4 4 C 1.53001 * 109.33985 * 61.31666 * 3 2 1 5 5 N 1.46895 * 109.47145 * 175.17802 * 4 3 2 6 6 C 1.46903 * 110.99941 * 175.77113 * 5 4 3 7 7 C 1.52995 * 109.47220 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.46715 * 55.00359 * 7 6 5 9 9 C 1.53000 * 109.47327 * 295.00206 * 7 6 5 10 10 C 1.52998 * 109.47042 * 174.99788 * 7 6 5 11 11 C 1.50701 * 109.47010 * 185.00251 * 10 7 6 12 12 H 1.08000 * 120.00297 * 0.02562 * 11 10 7 13 13 C 1.37881 * 119.99816 * 180.02562 * 11 10 7 14 14 N 1.31512 * 120.00309 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99862 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47068 * 59.99775 * 15 13 11 17 17 H 1.48501 * 109.46963 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.46990 * 299.99882 * 15 13 11 19 19 O 1.42726 * 109.20292 * 301.72130 * 3 2 1 20 20 C 1.43202 * 113.14614 * 291.59395 * 19 3 2 21 21 C 1.52963 * 108.48506 * 289.34192 * 20 19 3 22 22 C 1.50745 * 109.75953 * 49.22304 * 21 20 19 23 23 C 1.38599 * 118.76474 * 163.21881 * 22 21 20 24 24 C 1.38074 * 120.27560 * 179.52743 * 23 22 21 25 25 C 1.38258 * 119.86049 * 0.02562 * 24 23 22 26 26 C 1.38054 * 119.89972 * 0.09218 * 25 24 23 27 27 C 1.37901 * 121.35104 * 342.91711 * 22 21 20 28 28 H 1.08996 * 109.46695 * 54.25944 * 1 2 3 29 29 H 1.09004 * 109.46853 * 174.26205 * 1 2 3 30 30 H 1.09000 * 109.46577 * 294.25770 * 1 2 3 31 31 H 1.09002 * 109.46918 * 240.00124 * 2 1 3 32 32 H 1.08999 * 109.47480 * 120.00014 * 2 1 3 33 33 H 1.09005 * 109.46517 * 55.17489 * 4 3 2 34 34 H 1.08996 * 109.47148 * 295.17934 * 4 3 2 35 35 H 1.00901 * 111.00363 * 51.81839 * 5 4 3 36 36 H 1.08999 * 109.46766 * 300.00241 * 6 5 4 37 37 H 1.09004 * 109.46699 * 59.99768 * 6 5 4 38 38 H 1.08997 * 109.46959 * 59.99988 * 9 7 6 39 39 H 1.09002 * 109.47014 * 179.97438 * 9 7 6 40 40 H 1.08994 * 109.46953 * 299.99773 * 9 7 6 41 41 H 1.08996 * 109.47345 * 305.00109 * 10 7 6 42 42 H 1.09004 * 109.47138 * 65.00966 * 10 7 6 43 43 H 0.96996 * 119.99997 * 179.97438 * 14 13 11 44 44 H 1.08998 * 109.63613 * 169.64272 * 20 19 3 45 45 H 1.09005 * 109.80015 * 49.14268 * 20 19 3 46 46 H 1.08995 * 109.42223 * 289.13357 * 21 20 19 47 47 H 1.08996 * 109.42816 * 169.30981 * 21 20 19 48 48 H 1.07997 * 119.86348 * 359.51346 * 23 22 21 49 49 H 1.08003 * 120.06464 * 179.97438 * 24 23 22 50 50 H 1.08003 * 120.04822 * 180.11553 * 25 24 23 51 51 H 1.08001 * 119.84678 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5557 2.1512 1.2665 5 7 2.1379 3.4985 1.3268 6 6 1.6162 4.2464 2.4786 7 6 2.2445 5.6410 2.5081 8 1 2.0718 6.1375 1.5532 9 6 3.7495 5.5173 2.7538 10 6 1.6100 6.4626 3.6320 11 6 2.1391 7.8728 3.5837 12 1 2.8559 8.1550 2.8268 13 6 1.7080 8.8028 4.5059 14 7 0.8348 8.4593 5.4274 15 14 2.3634 10.5511 4.4456 16 1 2.0247 11.1617 3.1350 17 1 1.7476 11.3484 5.5366 18 1 3.8383 10.5330 4.6169 19 8 1.5284 2.1213 -1.1465 20 6 2.0769 1.6384 -2.3780 21 6 3.5409 2.0740 -2.4607 22 6 4.2489 1.7280 -1.1757 23 6 5.6347 1.7092 -1.1619 24 6 6.3153 1.4059 0.0005 25 6 5.6114 1.1193 1.1555 26 6 4.2310 1.1354 1.1420 27 6 3.5464 1.4391 -0.0247 28 1 -0.3632 0.6003 -0.8341 29 1 -0.3633 -1.0226 -0.1027 30 1 -0.3632 0.4222 0.9370 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8659 1.5817 2.1427 34 1 0.4684 2.2257 1.2479 35 1 1.9769 4.0008 0.4666 36 1 0.5334 4.3370 2.3926 37 1 1.8646 3.7167 3.3983 38 1 4.2015 4.9321 1.9530 39 1 4.1972 6.5110 2.7744 40 1 3.9221 5.0208 3.7087 41 1 0.5275 6.4762 3.5056 42 1 1.8579 6.0143 4.5942 43 1 0.5319 9.1135 6.0763 44 1 1.5217 2.0592 -3.2163 45 1 2.0162 0.5504 -2.4077 46 1 3.5900 3.1506 -2.6231 47 1 4.0255 1.5606 -3.2911 48 1 6.1845 1.9325 -2.0642 49 1 7.3952 1.3919 0.0073 50 1 6.1407 0.8835 2.0669 51 1 3.6820 0.9109 2.0446 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602668684.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:51 Heat of formation + Delta-G solvation = -43.971113 kcal Electronic energy + Delta-G solvation = -27677.138033 eV Core-core repulsion = 24154.144677 eV Total energy + Delta-G solvation = -3522.993356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.89391 -37.91340 -36.71675 -34.98597 -33.23441 -32.53412 -31.76358 -30.97902 -29.33335 -27.25064 -26.46814 -25.17327 -24.12412 -23.53648 -22.63476 -21.97085 -20.99721 -19.53011 -18.89700 -17.39593 -16.48250 -16.24277 -15.77893 -15.44427 -15.28948 -14.68085 -14.53785 -14.39153 -14.30524 -13.80067 -13.58532 -13.43518 -13.16732 -13.00612 -12.79555 -12.38905 -12.30221 -12.17631 -11.94942 -11.85492 -11.78280 -11.44885 -11.34657 -11.28381 -11.15808 -10.80126 -10.72350 -10.70757 -10.49767 -10.22632 -10.12060 -9.64822 -9.61411 -9.06996 -8.90066 -8.70592 -8.56667 -8.27555 -7.94959 -5.92639 -3.93338 1.36381 1.42784 3.37890 3.41786 3.44757 3.58169 3.77402 4.33854 4.45611 4.52942 4.55047 4.73178 4.77709 4.94273 5.00915 5.05134 5.07527 5.18184 5.23833 5.33026 5.41014 5.43115 5.51378 5.51991 5.64220 5.67980 5.74554 5.76586 5.78876 5.82939 5.94426 6.01728 6.04382 6.06723 6.12924 6.25719 6.45942 6.49745 6.54776 6.58506 6.65025 6.79080 7.00524 7.07484 7.11133 7.27005 7.28741 7.47707 7.74767 7.81515 7.92990 8.08172 8.52805 9.12886 9.69621 11.18953 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015493 B = 0.003152 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.869601 B = 8881.451943 C = 9569.280288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.141 4.141 3 C 0.160 3.840 4 C 0.075 3.925 5 N -0.679 5.679 6 C 0.065 3.935 7 C -0.080 4.080 8 H 0.052 0.948 9 C -0.120 4.120 10 C 0.028 3.972 11 C -0.511 4.511 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.889 3.111 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.277 1.277 19 O -0.361 6.361 20 C 0.058 3.942 21 C -0.114 4.114 22 C -0.075 4.075 23 C -0.123 4.123 24 C -0.119 4.119 25 C -0.123 4.123 26 C -0.086 4.086 27 C -0.078 4.078 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.344 0.656 36 H 0.023 0.977 37 H 0.063 0.937 38 H 0.042 0.958 39 H 0.051 0.949 40 H 0.037 0.963 41 H 0.012 0.988 42 H 0.015 0.985 43 H 0.259 0.741 44 H 0.096 0.904 45 H 0.055 0.945 46 H 0.085 0.915 47 H 0.079 0.921 48 H 0.117 0.883 49 H 0.117 0.883 50 H 0.119 0.881 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.003 -20.946 -15.118 26.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.179 4.179 3 C 0.120 3.880 4 C -0.055 4.055 5 N -0.310 5.310 6 C -0.064 4.064 7 C -0.099 4.099 8 H 0.070 0.930 9 C -0.177 4.177 10 C -0.010 4.010 11 C -0.550 4.550 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.717 3.283 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.203 1.203 19 O -0.280 6.280 20 C -0.019 4.019 21 C -0.151 4.151 22 C -0.075 4.075 23 C -0.141 4.141 24 C -0.137 4.137 25 C -0.141 4.141 26 C -0.104 4.104 27 C -0.079 4.079 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.162 0.838 36 H 0.041 0.959 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.030 0.970 42 H 0.034 0.966 43 H 0.069 0.931 44 H 0.114 0.886 45 H 0.073 0.927 46 H 0.103 0.897 47 H 0.097 0.903 48 H 0.135 0.865 49 H 0.136 0.864 50 H 0.137 0.863 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.324 -20.928 -14.615 26.076 hybrid contribution -0.261 1.111 -0.196 1.157 sum 5.063 -19.817 -14.811 25.253 Atomic orbital electron populations 1.21748 0.94737 1.01436 1.02814 1.22077 0.97160 0.95861 1.02821 1.20369 0.88871 0.91749 0.87058 1.21991 0.97163 0.91960 0.94363 1.60537 1.60978 1.02373 1.07092 1.22131 0.96066 0.95414 0.92760 1.21164 0.95687 0.92515 1.00563 0.92959 1.21556 0.96015 1.00559 0.99607 1.19113 0.95376 0.93910 0.92561 1.21214 1.24763 0.95214 1.13779 0.92672 1.25013 0.95243 0.98648 0.95615 1.69955 1.31793 1.34617 1.17419 0.86703 0.79174 0.84891 0.77500 1.20332 1.21394 1.20287 1.88101 1.65645 1.60707 1.13530 1.22592 0.93157 0.98815 0.87332 1.21099 0.96024 1.02776 0.95210 1.19399 0.93522 0.99929 0.94678 1.20950 0.93421 1.01431 0.98304 1.21032 0.99554 1.00052 0.93104 1.21044 0.94254 1.00749 0.98054 1.20911 0.94091 0.98414 0.96947 1.19737 0.94935 0.99810 0.93404 0.91859 0.92882 0.92283 0.91551 0.90786 0.90088 0.94199 0.83786 0.95917 0.91826 0.93931 0.93011 0.94341 0.96987 0.96639 0.93101 0.88594 0.92670 0.89677 0.90257 0.86545 0.86448 0.86301 0.86267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.34 37.16 0.35 -0.98 16 2 C -0.14 -1.32 4.71 -26.73 -0.13 -1.44 16 3 C 0.16 1.80 0.42 -91.79 -0.04 1.76 16 4 C 0.07 0.96 3.92 -3.83 -0.01 0.94 16 5 N -0.68 -10.42 5.35 -113.78 -0.61 -11.03 16 6 C 0.06 1.16 5.07 -3.82 -0.02 1.14 16 7 C -0.08 -1.71 2.48 -90.62 -0.22 -1.93 16 8 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 9 C -0.12 -2.45 8.89 37.16 0.33 -2.12 16 10 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 11 C -0.51 -14.67 8.41 -34.44 -0.29 -14.96 16 12 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 15 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 19 O -0.36 -4.29 8.79 -35.23 -0.31 -4.60 16 20 C 0.06 0.53 6.71 37.14 0.25 0.78 16 21 C -0.11 -1.06 6.00 -27.88 -0.17 -1.23 16 22 C -0.08 -0.86 5.78 -104.59 -0.60 -1.47 16 23 C -0.12 -1.34 9.67 -39.51 -0.38 -1.72 16 24 C -0.12 -1.29 10.05 -39.63 -0.40 -1.69 16 25 C -0.12 -1.39 10.05 -39.64 -0.40 -1.79 16 26 C -0.09 -1.02 8.91 -39.50 -0.35 -1.38 16 27 C -0.08 -0.94 4.23 -104.62 -0.44 -1.38 16 28 H 0.06 0.60 7.45 -51.93 -0.39 0.22 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.54 6.88 -51.93 -0.36 0.19 16 31 H 0.07 0.59 6.54 -51.93 -0.34 0.25 16 32 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 33 H 0.08 0.98 6.76 -51.93 -0.35 0.63 16 34 H 0.04 0.52 6.84 -51.93 -0.36 0.17 16 35 H 0.34 5.54 8.20 -39.29 -0.32 5.22 16 36 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.04 0.80 7.75 -51.93 -0.40 0.40 16 39 H 0.05 1.13 6.95 -51.93 -0.36 0.76 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.45 6.25 -51.93 -0.32 0.13 16 46 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 49 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 50 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 51 H 0.12 1.34 6.62 -52.49 -0.35 0.99 16 LS Contribution 392.12 15.07 5.91 5.91 Total: -1.00 -31.10 392.12 -11.02 -42.12 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -8.97 Total: 2.56 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -2.75 Total: -25.33 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.13 Total: -37.75 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.31 Total: -4.60 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.10 -11.02 -42.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602668684.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.852 kcal (2) G-P(sol) polarization free energy of solvation -31.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds