Wall clock time and date at job start Tue Mar 31 2020 11:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47247 * 2 1 4 4 C 1.53001 * 109.33985 * 61.31666 * 3 2 1 5 5 N 1.46895 * 109.47145 * 175.17802 * 4 3 2 6 6 C 1.46903 * 110.99941 * 175.77113 * 5 4 3 7 7 C 1.52995 * 109.47220 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.46715 * 55.00359 * 7 6 5 9 9 C 1.53000 * 109.47327 * 295.00206 * 7 6 5 10 10 C 1.52998 * 109.47042 * 174.99788 * 7 6 5 11 11 C 1.50701 * 109.47010 * 185.00251 * 10 7 6 12 12 H 1.08000 * 120.00297 * 0.02562 * 11 10 7 13 13 C 1.37881 * 119.99816 * 180.02562 * 11 10 7 14 14 N 1.31512 * 120.00309 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99862 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47068 * 59.99775 * 15 13 11 17 17 H 1.48501 * 109.46963 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.46990 * 299.99882 * 15 13 11 19 19 O 1.42726 * 109.20292 * 301.72130 * 3 2 1 20 20 C 1.43202 * 113.14614 * 291.59395 * 19 3 2 21 21 C 1.52963 * 108.48506 * 289.34192 * 20 19 3 22 22 C 1.50745 * 109.75953 * 49.22304 * 21 20 19 23 23 C 1.38599 * 118.76474 * 163.21881 * 22 21 20 24 24 C 1.38074 * 120.27560 * 179.52743 * 23 22 21 25 25 C 1.38258 * 119.86049 * 0.02562 * 24 23 22 26 26 C 1.38054 * 119.89972 * 0.09218 * 25 24 23 27 27 C 1.37901 * 121.35104 * 342.91711 * 22 21 20 28 28 H 1.08996 * 109.46695 * 54.25944 * 1 2 3 29 29 H 1.09004 * 109.46853 * 174.26205 * 1 2 3 30 30 H 1.09000 * 109.46577 * 294.25770 * 1 2 3 31 31 H 1.09002 * 109.46918 * 240.00124 * 2 1 3 32 32 H 1.08999 * 109.47480 * 120.00014 * 2 1 3 33 33 H 1.09005 * 109.46517 * 55.17489 * 4 3 2 34 34 H 1.08996 * 109.47148 * 295.17934 * 4 3 2 35 35 H 1.00901 * 111.00363 * 51.81839 * 5 4 3 36 36 H 1.08999 * 109.46766 * 300.00241 * 6 5 4 37 37 H 1.09004 * 109.46699 * 59.99768 * 6 5 4 38 38 H 1.08997 * 109.46959 * 59.99988 * 9 7 6 39 39 H 1.09002 * 109.47014 * 179.97438 * 9 7 6 40 40 H 1.08994 * 109.46953 * 299.99773 * 9 7 6 41 41 H 1.08996 * 109.47345 * 305.00109 * 10 7 6 42 42 H 1.09004 * 109.47138 * 65.00966 * 10 7 6 43 43 H 0.96996 * 119.99997 * 179.97438 * 14 13 11 44 44 H 1.08998 * 109.63613 * 169.64272 * 20 19 3 45 45 H 1.09005 * 109.80015 * 49.14268 * 20 19 3 46 46 H 1.08995 * 109.42223 * 289.13357 * 21 20 19 47 47 H 1.08996 * 109.42816 * 169.30981 * 21 20 19 48 48 H 1.07997 * 119.86348 * 359.51346 * 23 22 21 49 49 H 1.08003 * 120.06464 * 179.97438 * 24 23 22 50 50 H 1.08003 * 120.04822 * 180.11553 * 25 24 23 51 51 H 1.08001 * 119.84678 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5557 2.1512 1.2665 5 7 2.1379 3.4985 1.3268 6 6 1.6162 4.2464 2.4786 7 6 2.2445 5.6410 2.5081 8 1 2.0718 6.1375 1.5532 9 6 3.7495 5.5173 2.7538 10 6 1.6100 6.4626 3.6320 11 6 2.1391 7.8728 3.5837 12 1 2.8559 8.1550 2.8268 13 6 1.7080 8.8028 4.5059 14 7 0.8348 8.4593 5.4274 15 14 2.3634 10.5511 4.4456 16 1 2.0247 11.1617 3.1350 17 1 1.7476 11.3484 5.5366 18 1 3.8383 10.5330 4.6169 19 8 1.5284 2.1213 -1.1465 20 6 2.0769 1.6384 -2.3780 21 6 3.5409 2.0740 -2.4607 22 6 4.2489 1.7280 -1.1757 23 6 5.6347 1.7092 -1.1619 24 6 6.3153 1.4059 0.0005 25 6 5.6114 1.1193 1.1555 26 6 4.2310 1.1354 1.1420 27 6 3.5464 1.4391 -0.0247 28 1 -0.3632 0.6003 -0.8341 29 1 -0.3633 -1.0226 -0.1027 30 1 -0.3632 0.4222 0.9370 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8659 1.5817 2.1427 34 1 0.4684 2.2257 1.2479 35 1 1.9769 4.0008 0.4666 36 1 0.5334 4.3370 2.3926 37 1 1.8646 3.7167 3.3983 38 1 4.2015 4.9321 1.9530 39 1 4.1972 6.5110 2.7744 40 1 3.9221 5.0208 3.7087 41 1 0.5275 6.4762 3.5056 42 1 1.8579 6.0143 4.5942 43 1 0.5319 9.1135 6.0763 44 1 1.5217 2.0592 -3.2163 45 1 2.0162 0.5504 -2.4077 46 1 3.5900 3.1506 -2.6231 47 1 4.0255 1.5606 -3.2911 48 1 6.1845 1.9325 -2.0642 49 1 7.3952 1.3919 0.0073 50 1 6.1407 0.8835 2.0669 51 1 3.6820 0.9109 2.0446 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602668684.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:50 Heat of formation + Delta-G solvation = -60.303002 kcal Electronic energy + Delta-G solvation = -27677.846237 eV Core-core repulsion = 24154.144677 eV Total energy + Delta-G solvation = -3523.701560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.72079 -38.77964 -38.15499 -36.18839 -34.83827 -33.48851 -33.29749 -31.86062 -30.16700 -28.98996 -27.87795 -26.41753 -25.32661 -24.56345 -23.80099 -23.24129 -21.85438 -20.84126 -20.12526 -18.48204 -18.21951 -17.34328 -16.73100 -16.50177 -16.42470 -16.16918 -15.83508 -15.48588 -15.21854 -15.01614 -14.78339 -14.47280 -14.26146 -14.19146 -13.78515 -13.74013 -13.57329 -13.29627 -13.08249 -13.04651 -12.90062 -12.74653 -12.62781 -12.56515 -12.52190 -12.20805 -12.19993 -11.95665 -11.91031 -11.55474 -11.49249 -11.24577 -11.09249 -10.87204 -10.52624 -10.43113 -9.54284 -9.39717 -9.23573 -8.16982 -6.26148 0.53183 0.59246 1.39648 1.42663 1.50350 2.42278 2.78429 2.95720 3.16136 3.22127 3.63255 3.76351 3.91075 4.01903 4.09567 4.16704 4.24834 4.31504 4.32022 4.32951 4.41360 4.49076 4.53557 4.61145 4.61528 4.69180 4.76595 4.80289 4.86450 4.90981 4.94996 4.99525 5.03521 5.04657 5.06960 5.17986 5.23383 5.27982 5.29253 5.41418 5.46174 5.49400 5.56477 5.64682 5.72148 5.76435 5.81270 5.89051 6.09838 6.21199 6.29174 6.32833 6.49797 6.89174 7.41860 8.94960 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015493 B = 0.003152 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.869601 B = 8881.451943 C = 9569.280288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C 0.165 3.835 4 C 0.074 3.926 5 N -0.673 5.673 6 C 0.079 3.921 7 C -0.071 4.071 8 H 0.047 0.953 9 C -0.107 4.107 10 C 0.034 3.966 11 C -0.530 4.530 12 H 0.059 0.941 13 C -0.001 4.001 14 N -0.935 5.935 15 Si 0.960 3.040 16 H -0.268 1.268 17 H -0.283 1.283 18 H -0.267 1.267 19 O -0.381 6.381 20 C 0.054 3.946 21 C -0.112 4.112 22 C -0.090 4.090 23 C -0.131 4.131 24 C -0.127 4.127 25 C -0.135 4.135 26 C -0.101 4.101 27 C -0.091 4.091 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.037 0.963 35 H 0.341 0.659 36 H 0.014 0.986 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.035 0.965 40 H 0.035 0.965 41 H -0.015 1.015 42 H -0.009 1.009 43 H 0.262 0.738 44 H 0.112 0.888 45 H 0.065 0.935 46 H 0.077 0.923 47 H 0.102 0.898 48 H 0.135 0.865 49 H 0.136 0.864 50 H 0.131 0.869 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.161 -21.441 -16.652 27.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.125 3.875 4 C -0.055 4.055 5 N -0.303 5.303 6 C -0.050 4.050 7 C -0.090 4.090 8 H 0.065 0.935 9 C -0.164 4.164 10 C -0.003 4.003 11 C -0.568 4.568 12 H 0.077 0.923 13 C -0.198 4.198 14 N -0.576 5.576 15 Si 0.785 3.215 16 H -0.193 1.193 17 H -0.209 1.209 18 H -0.192 1.192 19 O -0.300 6.300 20 C -0.022 4.022 21 C -0.149 4.149 22 C -0.090 4.090 23 C -0.149 4.149 24 C -0.145 4.145 25 C -0.153 4.153 26 C -0.119 4.119 27 C -0.092 4.092 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.055 0.945 35 H 0.158 0.842 36 H 0.033 0.967 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.003 0.997 42 H 0.009 0.991 43 H 0.071 0.929 44 H 0.130 0.870 45 H 0.084 0.916 46 H 0.096 0.904 47 H 0.120 0.880 48 H 0.153 0.847 49 H 0.154 0.846 50 H 0.149 0.851 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.489 -21.440 -16.166 27.625 hybrid contribution -0.622 1.221 0.265 1.396 sum 5.867 -20.219 -15.901 26.384 Atomic orbital electron populations 1.21718 0.94432 1.02176 1.02095 1.22041 0.97313 0.94595 1.03451 1.20270 0.88672 0.92391 0.86189 1.22063 0.96899 0.90542 0.95963 1.60482 1.60900 1.03095 1.05852 1.21833 0.95272 0.93861 0.94035 1.20967 0.96239 0.93667 0.98103 0.93454 1.21412 0.95027 0.99821 1.00143 1.18993 0.93956 0.94135 0.93248 1.21600 1.24883 0.96421 1.13932 0.92326 1.25938 0.95395 1.03368 0.95119 1.70092 1.33032 1.36250 1.18199 0.85575 0.78844 0.79200 0.77892 1.19315 1.20857 1.19239 1.88067 1.66123 1.61392 1.14458 1.22789 0.93198 0.99575 0.86670 1.21128 0.96158 1.02529 0.95044 1.19729 0.94098 0.99806 0.95371 1.21254 0.93476 1.00994 0.99127 1.21334 1.00677 0.99548 0.92928 1.21291 0.94267 1.00841 0.98933 1.21047 0.94605 0.99102 0.97152 1.19870 0.95221 1.00321 0.93743 0.92596 0.91378 0.92990 0.90781 0.90259 0.89439 0.94509 0.84154 0.96739 0.91832 0.92110 0.94616 0.94547 0.99671 0.99072 0.92916 0.87023 0.91646 0.90416 0.88013 0.84693 0.84577 0.85142 0.86240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.34 71.98 0.67 -1.74 16 2 C -0.14 -2.34 4.71 30.60 0.14 -2.19 16 3 C 0.16 3.54 0.42 -11.55 0.00 3.54 16 4 C 0.07 1.86 3.92 86.30 0.34 2.20 16 5 N -0.67 -20.37 5.35 -513.89 -2.75 -23.12 16 6 C 0.08 2.87 5.07 86.30 0.44 3.30 16 7 C -0.07 -3.05 2.48 -10.80 -0.03 -3.08 16 8 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 9 C -0.11 -4.32 8.89 71.98 0.64 -3.68 16 10 C 0.03 1.86 4.45 29.85 0.13 1.99 16 11 C -0.53 -30.85 8.41 25.60 0.22 -30.63 16 12 H 0.06 3.30 7.06 -2.91 -0.02 3.28 16 13 C 0.00 -0.06 5.46 84.66 0.46 0.41 16 14 N -0.93 -58.14 13.29 21.45 0.28 -57.86 16 15 Si 0.96 45.35 29.54 68.60 2.03 47.38 16 16 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 17 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 O -0.38 -8.61 8.79 -148.98 -1.31 -9.92 16 20 C 0.05 0.88 6.71 71.97 0.48 1.36 16 21 C -0.11 -1.86 6.00 29.85 0.18 -1.68 16 22 C -0.09 -1.92 5.78 -19.84 -0.11 -2.03 16 23 C -0.13 -2.59 9.67 22.32 0.22 -2.37 16 24 C -0.13 -2.52 10.05 22.24 0.22 -2.30 16 25 C -0.14 -2.90 10.05 22.23 0.22 -2.68 16 26 C -0.10 -2.32 8.91 22.32 0.20 -2.12 16 27 C -0.09 -2.07 4.23 -19.86 -0.08 -2.16 16 28 H 0.05 1.00 7.45 -2.39 -0.02 0.98 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 0.92 6.88 -2.39 -0.02 0.90 16 31 H 0.07 1.17 6.54 -2.39 -0.02 1.15 16 32 H 0.08 1.28 8.09 -2.39 -0.02 1.26 16 33 H 0.09 2.07 6.76 -2.38 -0.02 2.05 16 34 H 0.04 0.96 6.84 -2.39 -0.02 0.94 16 35 H 0.34 10.83 8.20 -89.69 -0.74 10.09 16 36 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 38 H 0.06 2.23 7.75 -2.39 -0.02 2.21 16 39 H 0.03 1.53 6.95 -2.39 -0.02 1.52 16 40 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 41 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 42 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 43 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 44 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.07 0.93 6.25 -2.38 -0.01 0.91 16 46 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 49 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 50 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 51 H 0.12 2.61 6.62 -2.91 -0.02 2.59 16 Total: -1.00 -66.77 392.12 2.75 -64.03 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.16 Total: 23.34 kcal Atomic # 6 Polarization: -48.19 SS G_CDS: 4.34 Total: -43.85 kcal Atomic # 7 Polarization: -78.51 SS G_CDS: -2.47 Total: -80.98 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -1.31 Total: -9.92 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -66.77 2.75 -64.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602668684.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.725 kcal (2) G-P(sol) polarization free energy of solvation -66.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds