Wall clock time and date at job start Tue Mar 31 2020 11:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.46705 * 2 1 4 4 C 1.52995 * 109.33817 * 305.13567 * 3 2 1 5 5 N 1.46899 * 109.47315 * 303.47681 * 4 3 2 6 6 C 1.46900 * 110.99917 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47098 * 179.97438 * 6 5 4 8 8 H 1.09007 * 109.47422 * 304.99733 * 7 6 5 9 9 C 1.53003 * 109.47376 * 64.99595 * 7 6 5 10 10 C 1.52997 * 109.47536 * 184.99614 * 7 6 5 11 11 C 1.50700 * 109.47499 * 175.00043 * 10 7 6 12 12 H 1.07994 * 119.99804 * 359.97438 * 11 10 7 13 13 C 1.37874 * 119.99876 * 180.02562 * 11 10 7 14 14 N 1.31522 * 120.00123 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00433 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47516 * 89.99843 * 15 13 11 17 17 H 1.48502 * 109.47440 * 210.00058 * 15 13 11 18 18 H 1.48503 * 109.46960 * 329.99720 * 15 13 11 19 19 O 1.42724 * 109.20339 * 185.54187 * 3 2 1 20 20 C 1.43211 * 113.14708 * 291.59825 * 19 3 2 21 21 C 1.52972 * 108.47934 * 289.34214 * 20 19 3 22 22 C 1.50743 * 109.76550 * 49.21607 * 21 20 19 23 23 C 1.38593 * 118.76702 * 163.21173 * 22 21 20 24 24 C 1.38069 * 120.27835 * 179.52776 * 23 22 21 25 25 C 1.38261 * 119.85975 * 0.02562 * 24 23 22 26 26 C 1.38055 * 119.89964 * 0.08048 * 25 24 23 27 27 C 1.37914 * 121.34768 * 342.92586 * 22 21 20 28 28 H 1.08995 * 109.46872 * 293.88876 * 1 2 3 29 29 H 1.08994 * 109.46959 * 53.89475 * 1 2 3 30 30 H 1.09005 * 109.46863 * 173.88921 * 1 2 3 31 31 H 1.08993 * 109.47085 * 239.99844 * 2 1 3 32 32 H 1.09003 * 109.46664 * 119.99899 * 2 1 3 33 33 H 1.09002 * 109.47175 * 183.47259 * 4 3 2 34 34 H 1.09003 * 109.46806 * 63.47326 * 4 3 2 35 35 H 1.00903 * 110.99979 * 303.95144 * 5 4 3 36 36 H 1.08992 * 109.47767 * 59.99689 * 6 5 4 37 37 H 1.09005 * 109.47049 * 299.99151 * 6 5 4 38 38 H 1.09000 * 109.47175 * 300.00034 * 9 7 6 39 39 H 1.08996 * 109.47362 * 60.00082 * 9 7 6 40 40 H 1.08997 * 109.47150 * 180.02562 * 9 7 6 41 41 H 1.09007 * 109.46985 * 294.99879 * 10 7 6 42 42 H 1.09002 * 109.46955 * 54.99818 * 10 7 6 43 43 H 0.96998 * 120.00420 * 180.02562 * 14 13 11 44 44 H 1.08997 * 109.63527 * 169.64091 * 20 19 3 45 45 H 1.09002 * 109.79798 * 49.13525 * 20 19 3 46 46 H 1.09008 * 109.41667 * 289.13173 * 21 20 19 47 47 H 1.08993 * 109.42314 * 169.31554 * 21 20 19 48 48 H 1.08005 * 119.85673 * 359.53046 * 23 22 21 49 49 H 1.08000 * 120.06701 * 179.97438 * 24 23 22 50 50 H 1.07998 * 120.05024 * 180.11251 * 25 24 23 51 51 H 1.07996 * 119.85079 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4255 2.1971 -1.1806 5 7 1.7420 1.4926 -2.4302 6 6 1.1672 2.1905 -3.5880 7 6 1.5178 1.4291 -4.8680 8 1 2.5985 1.3011 -4.9303 9 6 0.8422 0.0565 -4.8463 10 6 1.0271 2.2198 -6.0824 11 6 1.4791 1.5329 -7.3453 12 1 2.0588 0.6235 -7.2875 13 6 1.1535 2.0659 -8.5744 14 7 1.5484 1.4667 -9.6766 15 14 0.1515 3.6392 -8.6745 16 1 1.0663 4.8089 -8.6872 17 1 -0.6594 3.6314 -9.9185 18 1 -0.7492 3.7280 -7.4971 19 8 3.4613 1.4380 -0.1302 20 6 4.1304 0.9124 1.0217 21 6 3.9861 1.9166 2.1666 22 6 2.5432 2.3312 2.3022 23 6 2.1335 2.9471 3.4743 24 6 0.8214 3.3484 3.6279 25 6 -0.0878 3.1345 2.6085 26 6 0.3190 2.5191 1.4415 27 6 1.6359 2.1145 1.2864 28 1 -0.3633 0.4162 0.9396 29 1 -0.3633 0.6055 -0.8302 30 1 -0.3633 -1.0219 -0.1094 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.8344 3.2067 -1.2190 34 1 0.3438 2.2476 -1.0560 35 1 2.7385 1.3758 -2.5370 36 1 1.5747 3.1999 -3.6430 37 1 0.0837 2.2414 -3.4804 38 1 1.1918 -0.5069 -3.9811 39 1 -0.2385 0.1843 -4.7841 40 1 1.0923 -0.4860 -5.7579 41 1 -0.0616 2.2714 -6.0667 42 1 1.4392 3.2284 -6.0500 43 1 1.3197 1.8419 -10.5413 44 1 5.1863 0.7636 0.7958 45 1 3.6799 -0.0377 1.3089 46 1 4.5974 2.7947 1.9577 47 1 4.3201 1.4566 3.0965 48 1 2.8437 3.1138 4.2707 49 1 0.5057 3.8276 4.5428 50 1 -1.1144 3.4488 2.7247 51 1 -0.3919 2.3520 0.6459 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602668687.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:53 Heat of formation + Delta-G solvation = -53.804294 kcal Electronic energy + Delta-G solvation = -27389.545212 eV Core-core repulsion = 23866.125457 eV Total energy + Delta-G solvation = -3523.419755 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.84319 -38.88020 -38.16258 -36.46336 -34.82956 -33.52446 -33.45556 -31.45298 -30.42126 -29.47759 -27.92873 -26.33075 -25.28754 -24.75010 -23.74599 -23.22904 -21.89332 -20.78661 -19.83288 -18.92744 -18.27105 -17.35661 -17.00278 -16.48494 -16.42237 -16.03031 -15.91583 -15.56106 -15.34884 -14.99483 -14.89319 -14.66705 -14.48248 -14.20918 -14.01306 -13.75546 -13.47394 -13.39223 -13.12851 -13.06083 -12.95163 -12.77906 -12.68181 -12.44694 -12.34203 -12.12504 -12.09057 -12.04727 -11.76993 -11.53790 -11.42556 -11.27917 -11.11078 -10.96533 -10.72381 -10.44552 -9.66813 -9.52951 -9.27848 -8.24988 -6.27064 0.38767 0.44858 1.36074 1.37748 1.49755 2.38464 2.73546 2.83754 3.10141 3.19695 3.66925 3.73859 3.83532 3.94398 4.01914 4.14841 4.18407 4.24823 4.28589 4.30825 4.43573 4.49667 4.55976 4.58728 4.62267 4.63639 4.65896 4.76439 4.88154 4.90629 4.92213 4.96247 4.99149 5.04110 5.07430 5.12860 5.15319 5.19727 5.38427 5.41094 5.44961 5.47006 5.54651 5.57703 5.60685 5.65430 5.73680 5.74818 6.08456 6.09480 6.26080 6.36495 6.49083 6.80589 7.36271 8.91868 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.021399 B = 0.002710 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.140194 B =10330.086299 C =10675.013119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.166 3.834 4 C 0.077 3.923 5 N -0.674 5.674 6 C 0.075 3.925 7 C -0.068 4.068 8 H 0.046 0.954 9 C -0.113 4.113 10 C -0.007 4.007 11 C -0.517 4.517 12 H 0.034 0.966 13 C 0.000 4.000 14 N -0.954 5.954 15 Si 0.948 3.052 16 H -0.270 1.270 17 H -0.286 1.286 18 H -0.246 1.246 19 O -0.387 6.387 20 C 0.051 3.949 21 C -0.112 4.112 22 C -0.089 4.089 23 C -0.128 4.128 24 C -0.121 4.121 25 C -0.132 4.132 26 C -0.118 4.118 27 C -0.117 4.117 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.021 0.979 34 H 0.097 0.903 35 H 0.344 0.656 36 H 0.022 0.978 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.044 0.956 40 H 0.025 0.975 41 H 0.020 0.980 42 H 0.012 0.988 43 H 0.264 0.736 44 H 0.112 0.888 45 H 0.061 0.939 46 H 0.083 0.917 47 H 0.104 0.896 48 H 0.140 0.860 49 H 0.144 0.856 50 H 0.141 0.859 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.722 2.292 32.970 33.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C 0.126 3.874 4 C -0.052 4.052 5 N -0.304 5.304 6 C -0.055 4.055 7 C -0.087 4.087 8 H 0.065 0.935 9 C -0.170 4.170 10 C -0.045 4.045 11 C -0.555 4.555 12 H 0.052 0.948 13 C -0.196 4.196 14 N -0.596 5.596 15 Si 0.772 3.228 16 H -0.195 1.195 17 H -0.211 1.211 18 H -0.170 1.170 19 O -0.306 6.306 20 C -0.025 4.025 21 C -0.149 4.149 22 C -0.089 4.089 23 C -0.146 4.146 24 C -0.139 4.139 25 C -0.150 4.150 26 C -0.136 4.136 27 C -0.118 4.118 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.114 0.886 35 H 0.162 0.838 36 H 0.040 0.960 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.044 0.956 41 H 0.038 0.962 42 H 0.030 0.970 43 H 0.073 0.927 44 H 0.130 0.870 45 H 0.079 0.921 46 H 0.101 0.899 47 H 0.122 0.878 48 H 0.158 0.842 49 H 0.162 0.838 50 H 0.159 0.841 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.161 1.926 32.687 32.764 hybrid contribution 0.354 1.171 -0.734 1.426 sum -0.807 3.096 31.953 32.113 Atomic orbital electron populations 1.21908 0.94538 1.02289 1.01930 1.21808 0.97429 0.94759 1.01966 1.20208 0.81053 0.94965 0.91134 1.22048 1.00675 0.94163 0.88288 1.60477 1.18788 1.50435 1.00726 1.21914 0.99845 0.94294 0.89402 1.20856 0.98959 0.95978 0.92888 0.93540 1.21470 0.99427 0.96157 0.99967 1.19572 0.96276 0.95297 0.93327 1.21452 1.33144 1.09814 0.91088 0.94751 1.26005 0.97169 1.01075 0.95330 1.70077 1.48850 1.42334 0.98334 0.85690 0.79467 0.79447 0.78213 1.19483 1.21147 1.16958 1.88064 1.17890 1.84541 1.40086 1.22805 0.98630 0.95764 0.85327 1.21154 0.92495 1.00618 1.00672 1.19793 0.95914 0.99184 0.94011 1.21333 0.97020 0.98969 0.97233 1.21446 0.93318 0.99445 0.99713 1.21405 1.00861 0.99173 0.93532 1.21343 0.95149 0.98315 0.98767 1.20112 0.94800 1.00858 0.96033 0.92060 0.92035 0.92422 0.90797 0.92309 0.96063 0.88554 0.83811 0.96017 0.90803 0.91554 0.93649 0.95601 0.96214 0.96992 0.92710 0.87048 0.92065 0.89910 0.87751 0.84187 0.83834 0.84136 0.85116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.40 71.99 0.60 -2.21 16 2 C -0.12 -2.52 4.56 30.60 0.14 -2.38 16 3 C 0.17 3.60 0.63 -11.56 -0.01 3.59 16 4 C 0.08 1.85 3.93 86.30 0.34 2.19 16 5 N -0.67 -18.38 5.13 -513.90 -2.64 -21.01 16 6 C 0.07 2.35 5.07 86.30 0.44 2.79 16 7 C -0.07 -2.68 2.48 -10.79 -0.03 -2.70 16 8 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 9 C -0.11 -4.32 8.89 71.98 0.64 -3.68 16 10 C -0.01 -0.32 3.52 29.85 0.10 -0.22 16 11 C -0.52 -30.25 8.96 25.60 0.23 -30.02 16 12 H 0.03 2.22 7.30 -2.91 -0.02 2.19 16 13 C 0.00 0.01 5.47 84.65 0.46 0.47 16 14 N -0.95 -61.16 13.96 21.45 0.30 -60.86 16 15 Si 0.95 45.28 27.47 68.60 1.88 47.16 16 16 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 17 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 18 H -0.25 -10.88 6.54 99.48 0.65 -10.22 16 19 O -0.39 -9.03 9.63 -148.98 -1.43 -10.47 16 20 C 0.05 0.85 6.72 71.97 0.48 1.34 16 21 C -0.11 -1.64 6.00 29.85 0.18 -1.46 16 22 C -0.09 -1.61 5.78 -19.84 -0.11 -1.72 16 23 C -0.13 -1.91 9.67 22.31 0.22 -1.69 16 24 C -0.12 -1.69 10.05 22.23 0.22 -1.46 16 25 C -0.13 -2.00 10.05 22.23 0.22 -1.78 16 26 C -0.12 -2.13 7.01 22.32 0.16 -1.97 16 27 C -0.12 -2.36 4.67 -19.86 -0.09 -2.45 16 28 H 0.06 1.05 5.77 -2.39 -0.01 1.04 16 29 H 0.06 1.24 6.01 -2.39 -0.01 1.23 16 30 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.07 1.75 7.68 -2.39 -0.02 1.74 16 32 H 0.06 1.14 6.71 -2.39 -0.02 1.12 16 33 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.10 2.10 4.74 -2.39 -0.01 2.09 16 35 H 0.34 9.92 8.21 -89.69 -0.74 9.18 16 36 H 0.02 0.69 8.14 -2.39 -0.02 0.68 16 37 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 38 H 0.07 2.23 7.75 -2.39 -0.02 2.21 16 39 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.02 1.12 6.95 -2.39 -0.02 1.11 16 41 H 0.02 0.92 7.20 -2.38 -0.02 0.90 16 42 H 0.01 0.55 7.57 -2.39 -0.02 0.53 16 43 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 44 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.06 0.97 6.32 -2.39 -0.02 0.96 16 46 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 47 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 49 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 50 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 51 H 0.13 2.18 5.19 -2.91 -0.02 2.17 16 Total: -1.00 -68.26 381.97 2.43 -65.84 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 0.12 Total: 22.71 kcal Atomic # 6 Polarization: -47.57 SS G_CDS: 4.20 Total: -43.37 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -2.34 Total: -81.88 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -1.43 Total: -10.47 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.16 kcal Total: -68.26 2.43 -65.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602668687.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.032 kcal (2) G-P(sol) polarization free energy of solvation -68.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds