Wall clock time and date at job start Tue Mar 31 2020 11:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46987 * 2 1 4 4 C 1.53001 * 109.34100 * 180.13962 * 3 2 1 5 5 N 1.46909 * 109.46827 * 59.66157 * 4 3 2 6 6 C 1.46898 * 110.99738 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.47006 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.47105 * 54.99733 * 7 6 5 9 9 C 1.53001 * 109.46874 * 294.99937 * 7 6 5 10 10 C 1.52994 * 109.47130 * 175.00145 * 7 6 5 11 11 C 1.50697 * 109.46902 * 185.00096 * 10 7 6 12 12 H 1.07999 * 120.00690 * 359.97438 * 11 10 7 13 13 C 1.37888 * 120.00004 * 180.02562 * 11 10 7 14 14 N 1.31515 * 119.99824 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99920 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47226 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47302 * 120.00003 * 15 13 11 18 18 H 1.48503 * 109.46472 * 239.99655 * 15 13 11 19 19 O 1.42730 * 109.34160 * 299.81668 * 3 2 1 20 20 C 1.43218 * 113.11634 * 171.85206 * 19 3 2 21 21 C 1.52969 * 108.47496 * 289.27770 * 20 19 3 22 22 C 1.50744 * 109.76817 * 49.16525 * 21 20 19 23 23 C 1.38595 * 118.77179 * 163.21890 * 22 21 20 24 24 C 1.38060 * 120.28163 * 179.85022 * 23 22 21 25 25 C 1.38269 * 119.86333 * 359.96535 * 24 23 22 26 26 C 1.38045 * 119.89342 * 0.07643 * 25 24 23 27 27 C 1.37911 * 121.34903 * 343.16024 * 22 21 20 28 28 H 1.08995 * 109.46909 * 54.61304 * 1 2 3 29 29 H 1.09001 * 109.46781 * 174.60966 * 1 2 3 30 30 H 1.08992 * 109.47413 * 294.60512 * 1 2 3 31 31 H 1.08997 * 109.47247 * 239.99702 * 2 1 3 32 32 H 1.09005 * 109.46835 * 119.99303 * 2 1 3 33 33 H 1.08996 * 109.46894 * 299.66681 * 4 3 2 34 34 H 1.08994 * 109.47583 * 179.66518 * 4 3 2 35 35 H 1.00903 * 110.99766 * 56.04729 * 5 4 3 36 36 H 1.08996 * 109.47219 * 60.00073 * 6 5 4 37 37 H 1.09004 * 109.46801 * 300.00064 * 6 5 4 38 38 H 1.08998 * 109.46886 * 179.97438 * 9 7 6 39 39 H 1.09003 * 109.47036 * 59.99984 * 9 7 6 40 40 H 1.08999 * 109.47429 * 300.00146 * 9 7 6 41 41 H 1.09006 * 109.47353 * 304.99533 * 10 7 6 42 42 H 1.08993 * 109.47677 * 64.99925 * 10 7 6 43 43 H 0.97000 * 119.99789 * 179.97438 * 14 13 11 44 44 H 1.09001 * 109.63315 * 48.97377 * 20 19 3 45 45 H 1.08998 * 109.63331 * 169.37638 * 20 19 3 46 46 H 1.08992 * 109.42116 * 169.25462 * 21 20 19 47 47 H 1.09001 * 109.42116 * 289.13282 * 21 20 19 48 48 H 1.08000 * 119.85695 * 359.83251 * 23 22 21 49 49 H 1.08006 * 120.06989 * 179.97438 * 24 23 22 50 50 H 1.07997 * 120.04921 * 180.02562 * 25 24 23 51 51 H 1.07998 * 119.84860 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4390 -0.0035 5 7 4.0553 0.7393 -1.2006 6 6 5.5236 0.7157 -1.2375 7 6 5.9904 -0.0191 -2.4958 8 1 5.5408 0.4436 -3.3745 9 6 5.5638 -1.4863 -2.4174 10 6 7.5146 0.0641 -2.5991 11 6 7.9643 -0.5518 -3.8989 12 1 7.2359 -0.9619 -4.5828 13 6 9.3059 -0.5927 -4.2147 14 7 10.1929 -0.0938 -3.3817 15 14 9.8632 -1.3555 -5.8262 16 1 8.6792 -1.8403 -6.5800 17 1 10.5817 -0.3371 -6.6336 18 1 10.7720 -2.4960 -5.5456 19 8 1.5662 2.1113 -1.1685 20 6 1.8394 3.5172 -1.1613 21 6 0.9436 4.1797 -0.1131 22 6 1.0356 3.4235 1.1876 23 6 0.5945 4.0378 2.3491 24 6 0.6615 3.3727 3.5571 25 6 1.1702 2.0880 3.6084 26 6 1.6107 1.4757 2.4522 27 6 1.5456 2.1431 1.2387 28 1 -0.3633 0.5951 -0.8378 29 1 -0.3633 -1.0232 -0.0965 30 1 -0.3634 0.4278 0.9343 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.9342 0.9288 0.8882 34 1 3.9357 2.4658 -0.0095 35 1 3.6787 1.1544 -2.0397 36 1 5.9010 0.2003 -0.3544 37 1 5.9031 1.7374 -1.2519 38 1 5.8959 -2.0096 -3.3140 39 1 4.4779 -1.5455 -2.3438 40 1 6.0132 -1.9489 -1.5388 41 1 7.8246 1.1086 -2.5655 42 1 7.9652 -0.4756 -1.7663 43 1 11.1367 -0.1229 -3.6037 44 1 2.8860 3.6856 -0.9078 45 1 1.6287 3.9363 -2.1452 46 1 1.2675 5.2087 0.0422 47 1 -0.0889 4.1736 -0.4627 48 1 0.1969 5.0411 2.3090 49 1 0.3171 3.8548 4.4601 50 1 1.2237 1.5648 4.5516 51 1 2.0075 0.4721 2.4930 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602668688.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:56 Heat of formation + Delta-G solvation = -60.105841 kcal Electronic energy + Delta-G solvation = -27303.618527 eV Core-core repulsion = 23779.925517 eV Total energy + Delta-G solvation = -3523.693010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.81705 -38.93346 -38.00942 -36.15153 -35.03518 -33.60155 -33.36827 -31.52656 -30.16713 -29.17414 -28.22861 -26.37540 -24.95747 -24.59654 -23.91863 -23.40691 -21.81413 -20.98534 -20.14970 -18.51005 -18.26629 -17.29116 -16.89138 -16.57439 -16.30650 -16.19520 -15.72098 -15.52198 -15.28650 -15.06375 -14.67113 -14.62586 -14.45330 -14.31467 -14.07502 -13.63569 -13.39329 -13.33994 -13.21495 -13.07150 -12.88504 -12.75046 -12.69883 -12.52525 -12.37084 -12.20523 -12.17902 -11.94731 -11.84118 -11.56319 -11.48189 -11.30133 -11.08239 -10.97739 -10.53866 -10.47106 -9.68902 -9.52514 -9.29828 -8.17459 -6.26301 0.39135 0.45693 1.39876 1.40389 1.53604 2.42155 2.69725 2.86196 3.16041 3.21415 3.69033 3.76361 3.80478 3.91324 4.00920 4.14500 4.16583 4.21478 4.26879 4.32759 4.44237 4.51290 4.53045 4.56510 4.62089 4.64557 4.68905 4.75164 4.89122 4.89713 4.93275 4.95276 5.03885 5.07131 5.07772 5.14468 5.20619 5.29437 5.35587 5.47680 5.50015 5.52372 5.54644 5.57145 5.61839 5.69137 5.81930 5.89357 6.02436 6.09145 6.24745 6.31759 6.47750 6.89870 7.41933 8.94909 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.022937 B = 0.002537 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.462111 B =11033.541091 C =11096.866619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 C 0.169 3.831 4 C 0.045 3.955 5 N -0.669 5.669 6 C 0.078 3.922 7 C -0.072 4.072 8 H 0.052 0.948 9 C -0.112 4.112 10 C 0.032 3.968 11 C -0.526 4.526 12 H 0.061 0.939 13 C -0.003 4.003 14 N -0.936 5.936 15 Si 0.961 3.039 16 H -0.262 1.262 17 H -0.280 1.280 18 H -0.279 1.279 19 O -0.372 6.372 20 C 0.047 3.953 21 C -0.109 4.109 22 C -0.089 4.089 23 C -0.128 4.128 24 C -0.122 4.122 25 C -0.130 4.130 26 C -0.117 4.117 27 C -0.112 4.112 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.023 0.977 35 H 0.344 0.656 36 H 0.062 0.938 37 H 0.013 0.987 38 H 0.037 0.963 39 H 0.067 0.933 40 H 0.035 0.965 41 H -0.016 1.016 42 H -0.010 1.010 43 H 0.262 0.738 44 H 0.046 0.954 45 H 0.113 0.887 46 H 0.099 0.901 47 H 0.090 0.910 48 H 0.139 0.861 49 H 0.144 0.856 50 H 0.141 0.859 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.994 7.805 13.111 28.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.134 4.134 3 C 0.129 3.871 4 C -0.084 4.084 5 N -0.301 5.301 6 C -0.051 4.051 7 C -0.091 4.091 8 H 0.070 0.930 9 C -0.169 4.169 10 C -0.005 4.005 11 C -0.564 4.564 12 H 0.079 0.921 13 C -0.200 4.200 14 N -0.577 5.577 15 Si 0.786 3.214 16 H -0.186 1.186 17 H -0.205 1.205 18 H -0.205 1.205 19 O -0.290 6.290 20 C -0.030 4.030 21 C -0.146 4.146 22 C -0.089 4.089 23 C -0.145 4.145 24 C -0.140 4.140 25 C -0.148 4.148 26 C -0.135 4.135 27 C -0.113 4.113 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.041 0.959 35 H 0.163 0.837 36 H 0.081 0.919 37 H 0.031 0.969 38 H 0.056 0.944 39 H 0.086 0.914 40 H 0.054 0.946 41 H 0.003 0.997 42 H 0.008 0.992 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.131 0.869 46 H 0.117 0.883 47 H 0.108 0.892 48 H 0.157 0.843 49 H 0.161 0.839 50 H 0.159 0.841 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -23.974 7.107 13.261 28.304 hybrid contribution 1.353 0.904 -0.667 1.759 sum -22.620 8.011 12.594 27.101 Atomic orbital electron populations 1.21641 0.95106 1.01586 1.01380 1.21448 0.96269 0.92255 1.03470 1.20218 0.90910 0.93127 0.82803 1.22477 0.94915 0.96253 0.94798 1.60396 1.07082 1.57527 1.05066 1.21854 0.87413 0.97314 0.98492 1.20985 0.95547 0.96722 0.95810 0.92996 1.21471 1.00450 0.94921 1.00052 1.19013 0.91687 0.94384 0.95424 1.21666 0.92281 1.37781 1.04715 0.92098 1.25960 0.97201 0.96232 1.00650 1.70111 1.01762 1.47613 1.38230 0.85456 0.78446 0.78109 0.79407 1.18560 1.20535 1.20518 1.88112 1.80289 1.20529 1.40109 1.22806 0.98056 0.81346 1.00774 1.21111 1.01910 0.99648 0.91971 1.19786 0.99022 0.93940 0.96192 1.21322 1.00408 1.00842 0.91967 1.21440 0.99053 0.95038 0.98435 1.21391 0.98959 0.95782 0.98644 1.21267 0.99839 1.00367 0.92017 1.20068 1.00906 0.94814 0.95496 0.93130 0.92064 0.93304 0.90598 0.90162 0.90289 0.95870 0.83735 0.91931 0.96909 0.94431 0.91391 0.94558 0.99746 0.99152 0.92965 0.93585 0.86855 0.88316 0.89218 0.84299 0.83854 0.84116 0.85265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.48 71.98 0.68 -2.08 16 2 C -0.10 -2.09 4.64 30.59 0.14 -1.95 16 3 C 0.17 3.78 0.42 -11.56 0.00 3.78 16 4 C 0.05 1.15 4.42 86.30 0.38 1.53 16 5 N -0.67 -19.33 5.16 -513.87 -2.65 -21.99 16 6 C 0.08 2.76 5.07 86.30 0.44 3.20 16 7 C -0.07 -2.98 2.48 -10.79 -0.03 -3.01 16 8 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 9 C -0.11 -4.32 8.89 71.98 0.64 -3.68 16 10 C 0.03 1.74 4.45 29.85 0.13 1.87 16 11 C -0.53 -30.14 8.41 25.60 0.22 -29.93 16 12 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 13 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 14 N -0.94 -57.84 13.29 21.45 0.28 -57.55 16 15 Si 0.96 44.99 29.54 68.60 2.03 47.01 16 16 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 19 O -0.37 -8.68 8.76 -148.98 -1.30 -9.98 16 20 C 0.05 0.88 6.72 71.97 0.48 1.37 16 21 C -0.11 -1.75 6.00 29.85 0.18 -1.57 16 22 C -0.09 -1.70 5.78 -19.84 -0.11 -1.81 16 23 C -0.13 -2.03 9.67 22.31 0.22 -1.82 16 24 C -0.12 -1.79 10.05 22.23 0.22 -1.57 16 25 C -0.13 -2.05 10.05 22.23 0.22 -1.83 16 26 C -0.12 -2.19 8.38 22.32 0.19 -2.00 16 27 C -0.11 -2.32 3.76 -19.86 -0.07 -2.40 16 28 H 0.05 1.10 7.52 -2.39 -0.02 1.08 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.05 0.95 6.98 -2.39 -0.02 0.94 16 31 H 0.08 1.86 7.58 -2.39 -0.02 1.84 16 32 H 0.08 1.58 6.52 -2.38 -0.02 1.56 16 33 H 0.08 2.00 8.05 -2.39 -0.02 1.98 16 34 H 0.02 0.62 6.48 -2.39 -0.02 0.60 16 35 H 0.34 10.01 8.12 -89.69 -0.73 9.28 16 36 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.04 1.55 6.95 -2.39 -0.02 1.53 16 39 H 0.07 2.28 7.75 -2.39 -0.02 2.27 16 40 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 41 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16 42 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 43 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 44 H 0.05 0.96 6.21 -2.39 -0.01 0.94 16 45 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 48 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 49 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 50 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 51 H 0.13 2.20 6.52 -2.91 -0.02 2.18 16 Total: -1.00 -65.75 391.84 2.91 -62.84 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.17 Total: 21.30 kcal Atomic # 6 Polarization: -46.02 SS G_CDS: 4.39 Total: -41.63 kcal Atomic # 7 Polarization: -77.17 SS G_CDS: -2.37 Total: -79.54 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -1.30 Total: -9.98 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -65.75 2.91 -62.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602668688.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.736 kcal (2) G-P(sol) polarization free energy of solvation -65.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds