Wall clock time and date at job start Tue Mar 31 2020 11:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47042 * 2 1 4 4 C 1.53001 * 109.33870 * 180.13917 * 3 2 1 5 5 N 1.46907 * 109.46964 * 59.66328 * 4 3 2 6 6 C 1.46901 * 110.99904 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47076 * 180.02562 * 6 5 4 8 8 H 1.08995 * 109.46746 * 304.99742 * 7 6 5 9 9 C 1.52995 * 109.47111 * 64.99572 * 7 6 5 10 10 C 1.53001 * 109.46967 * 184.99571 * 7 6 5 11 11 C 1.50703 * 109.46696 * 174.99818 * 10 7 6 12 12 H 1.07991 * 120.00262 * 0.02562 * 11 10 7 13 13 C 1.37878 * 119.99406 * 180.02562 * 11 10 7 14 14 N 1.31515 * 120.00248 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99570 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47037 * 60.00126 * 15 13 11 17 17 H 1.48505 * 109.47204 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47213 * 299.99904 * 15 13 11 19 19 O 1.42722 * 109.33944 * 299.81866 * 3 2 1 20 20 C 1.43213 * 113.11708 * 171.85676 * 19 3 2 21 21 C 1.52974 * 108.47375 * 289.27435 * 20 19 3 22 22 C 1.50744 * 109.76700 * 49.16264 * 21 20 19 23 23 C 1.38590 * 118.76917 * 163.22181 * 22 21 20 24 24 C 1.38075 * 120.27944 * 179.85232 * 23 22 21 25 25 C 1.38267 * 119.86111 * 359.96248 * 24 23 22 26 26 C 1.38050 * 119.89454 * 0.07829 * 25 24 23 27 27 C 1.37915 * 121.35124 * 343.16233 * 22 21 20 28 28 H 1.09001 * 109.47020 * 174.60859 * 1 2 3 29 29 H 1.08992 * 109.47372 * 294.61221 * 1 2 3 30 30 H 1.08999 * 109.46759 * 54.60974 * 1 2 3 31 31 H 1.08995 * 109.47859 * 239.99382 * 2 1 3 32 32 H 1.09007 * 109.46874 * 119.99476 * 2 1 3 33 33 H 1.09004 * 109.47227 * 299.66417 * 4 3 2 34 34 H 1.08996 * 109.47211 * 179.66425 * 4 3 2 35 35 H 1.00891 * 110.99922 * 56.04614 * 5 4 3 36 36 H 1.08996 * 109.47178 * 59.99746 * 6 5 4 37 37 H 1.09008 * 109.46561 * 299.99937 * 6 5 4 38 38 H 1.09003 * 109.47655 * 300.00196 * 9 7 6 39 39 H 1.09008 * 109.47482 * 60.00317 * 9 7 6 40 40 H 1.09000 * 109.47031 * 180.02562 * 9 7 6 41 41 H 1.08991 * 109.47256 * 294.99948 * 10 7 6 42 42 H 1.09001 * 109.46876 * 55.00254 * 10 7 6 43 43 H 0.97008 * 119.99463 * 179.97438 * 14 13 11 44 44 H 1.09005 * 109.63515 * 48.96870 * 20 19 3 45 45 H 1.09002 * 109.63921 * 169.37310 * 20 19 3 46 46 H 1.08994 * 109.42334 * 169.25456 * 21 20 19 47 47 H 1.08998 * 109.42125 * 289.13609 * 21 20 19 48 48 H 1.08000 * 119.86081 * 359.83737 * 23 22 21 49 49 H 1.07999 * 120.06637 * 179.97438 * 24 23 22 50 50 H 1.07992 * 120.05016 * 180.02562 * 25 24 23 51 51 H 1.08004 * 119.84709 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4390 -0.0035 5 7 4.0553 0.7393 -1.2006 6 6 5.5236 0.7156 -1.2375 7 6 5.9904 -0.0191 -2.4958 8 1 5.5388 -1.0106 -2.5260 9 6 5.5670 0.7721 -3.7349 10 6 7.5143 -0.1531 -2.4724 11 6 7.9637 -0.9824 -3.6477 12 1 7.2354 -1.3743 -4.3421 13 6 9.3049 -1.2408 -3.8364 14 7 10.1919 -0.7631 -2.9910 15 14 9.8619 -2.2694 -5.2929 16 1 9.4429 -1.6083 -6.5548 17 1 11.3411 -2.3994 -5.2703 18 1 9.2448 -3.6175 -5.2117 19 8 1.5662 2.1113 -1.1684 20 6 1.8394 3.5172 -1.1613 21 6 0.9436 4.1798 -0.1131 22 6 1.0357 3.4236 1.1876 23 6 0.5945 4.0379 2.3490 24 6 0.6616 3.3728 3.5571 25 6 1.1703 2.0881 3.6084 26 6 1.6107 1.4758 2.4522 27 6 1.5456 2.1432 1.2387 28 1 -0.3633 -1.0231 -0.0966 29 1 -0.3634 0.4280 0.9342 30 1 -0.3633 0.5952 -0.8378 31 1 1.8935 -0.5139 -0.8898 32 1 1.8933 -0.5138 0.8901 33 1 3.9342 0.9288 0.8883 34 1 3.9357 2.4658 -0.0095 35 1 3.6788 1.1544 -2.0396 36 1 5.9010 0.2002 -0.3543 37 1 5.9032 1.7374 -1.2519 38 1 4.4813 0.8677 -3.7517 39 1 6.0185 1.7638 -3.7047 40 1 5.8991 0.2485 -4.6314 41 1 7.9670 0.8366 -2.5317 42 1 7.8222 -0.6386 -1.5463 43 1 11.1354 -0.9453 -3.1237 44 1 2.8861 3.6856 -0.9078 45 1 1.6288 3.9363 -2.1452 46 1 1.2676 5.2088 0.0421 47 1 -0.0888 4.1736 -0.4626 48 1 0.1968 5.0412 2.3089 49 1 0.3172 3.8549 4.4600 50 1 1.2237 1.5649 4.5516 51 1 2.0075 0.4721 2.4931 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602668689.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:58 Heat of formation + Delta-G solvation = -59.920246 kcal Electronic energy + Delta-G solvation = -27319.484240 eV Core-core repulsion = 23795.799278 eV Total energy + Delta-G solvation = -3523.684962 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.82419 -38.96191 -38.06526 -36.15106 -35.04266 -33.57652 -33.36608 -31.53117 -30.16923 -29.19448 -28.23328 -26.53856 -24.95936 -24.59263 -23.92592 -23.40174 -21.81652 -20.81264 -20.22032 -18.54291 -18.27547 -17.32531 -17.04265 -16.59514 -16.34811 -16.02914 -15.84394 -15.48749 -15.29409 -15.00475 -14.70378 -14.60662 -14.40375 -14.31021 -14.12378 -13.60474 -13.51893 -13.34654 -13.25761 -13.22630 -12.83814 -12.73610 -12.69692 -12.57568 -12.37917 -12.22263 -12.16408 -11.93500 -11.85062 -11.58869 -11.48479 -11.30133 -11.07711 -11.01527 -10.52403 -10.47262 -9.69144 -9.52667 -9.32186 -8.16769 -6.25881 0.38879 0.45524 1.40567 1.43457 1.51038 2.42628 2.69292 2.85883 3.16590 3.20913 3.68576 3.75836 3.80029 3.91356 4.00021 4.14304 4.21014 4.22787 4.24099 4.27091 4.43286 4.45328 4.51078 4.55954 4.61624 4.63779 4.68263 4.74062 4.77319 4.86991 4.89682 4.95263 5.02975 5.06107 5.07440 5.13872 5.20211 5.23735 5.34022 5.38902 5.47995 5.49006 5.54505 5.55645 5.61652 5.68867 5.79921 5.89650 6.03681 6.08953 6.24419 6.31765 6.49272 6.89847 7.42284 8.95178 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.023200 B = 0.002540 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.619306 B =11019.914272 C =11146.382586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.098 4.098 3 C 0.170 3.830 4 C 0.044 3.956 5 N -0.676 5.676 6 C 0.078 3.922 7 C -0.073 4.073 8 H 0.058 0.942 9 C -0.125 4.125 10 C 0.034 3.966 11 C -0.529 4.529 12 H 0.061 0.939 13 C -0.003 4.003 14 N -0.936 5.936 15 Si 0.961 3.039 16 H -0.267 1.267 17 H -0.285 1.285 18 H -0.268 1.268 19 O -0.372 6.372 20 C 0.046 3.954 21 C -0.109 4.109 22 C -0.089 4.089 23 C -0.127 4.127 24 C -0.122 4.122 25 C -0.130 4.130 26 C -0.118 4.118 27 C -0.112 4.112 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.026 0.974 35 H 0.346 0.654 36 H 0.058 0.942 37 H 0.018 0.982 38 H 0.064 0.936 39 H 0.039 0.961 40 H 0.046 0.954 41 H -0.012 1.012 42 H -0.014 1.014 43 H 0.262 0.738 44 H 0.046 0.954 45 H 0.115 0.885 46 H 0.099 0.901 47 H 0.090 0.910 48 H 0.140 0.860 49 H 0.144 0.856 50 H 0.141 0.859 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.941 10.470 11.520 28.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.136 4.136 3 C 0.130 3.870 4 C -0.085 4.085 5 N -0.308 5.308 6 C -0.051 4.051 7 C -0.092 4.092 8 H 0.076 0.924 9 C -0.183 4.183 10 C -0.004 4.004 11 C -0.567 4.567 12 H 0.079 0.921 13 C -0.200 4.200 14 N -0.577 5.577 15 Si 0.786 3.214 16 H -0.192 1.192 17 H -0.210 1.210 18 H -0.193 1.193 19 O -0.290 6.290 20 C -0.031 4.031 21 C -0.146 4.146 22 C -0.089 4.089 23 C -0.145 4.145 24 C -0.139 4.139 25 C -0.148 4.148 26 C -0.136 4.136 27 C -0.113 4.113 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.044 0.956 35 H 0.166 0.834 36 H 0.076 0.924 37 H 0.037 0.963 38 H 0.082 0.918 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.007 0.993 42 H 0.005 0.995 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.133 0.867 46 H 0.118 0.882 47 H 0.108 0.892 48 H 0.158 0.842 49 H 0.162 0.838 50 H 0.158 0.842 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -23.914 9.762 11.678 28.347 hybrid contribution 1.333 0.586 -0.512 1.543 sum -22.582 10.348 11.165 27.233 Atomic orbital electron populations 1.21638 0.94976 1.01596 1.01452 1.21454 0.96389 0.92361 1.03365 1.20204 0.90875 0.93070 0.82897 1.22485 0.94969 0.96333 0.94740 1.60425 1.07253 1.57864 1.05270 1.21848 0.87344 0.97654 0.98265 1.20994 0.95734 0.98524 0.93963 0.92351 1.21635 0.99892 0.98926 0.97810 1.18990 0.91528 0.94718 0.95123 1.21613 0.92324 1.31977 1.10792 0.92059 1.25955 0.97171 0.97435 0.99409 1.70101 1.01805 1.47178 1.38608 0.85564 0.76917 0.79369 0.79598 1.19176 1.21033 1.19266 1.88108 1.80276 1.20608 1.40044 1.22827 0.98099 0.81272 1.00852 1.21116 1.01944 0.99666 0.91909 1.19789 0.98962 0.93876 0.96252 1.21328 1.00369 1.00857 0.91929 1.21444 0.99020 0.94993 0.98476 1.21387 0.98984 0.95819 0.98603 1.21263 0.99874 1.00342 0.92083 1.20053 1.00955 0.94856 0.95413 0.92104 0.93240 0.93013 0.90781 0.90269 0.90447 0.95628 0.83355 0.92394 0.96346 0.91753 0.94223 0.93495 0.99316 0.99531 0.92953 0.93524 0.86704 0.88220 0.89180 0.84211 0.83828 0.84165 0.85403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.48 71.98 0.68 -2.13 16 2 C -0.10 -2.19 4.64 30.60 0.14 -2.05 16 3 C 0.17 3.85 0.42 -11.55 0.00 3.84 16 4 C 0.04 1.15 4.42 86.30 0.38 1.53 16 5 N -0.68 -19.99 5.71 -513.86 -2.93 -22.92 16 6 C 0.08 2.78 5.14 86.30 0.44 3.22 16 7 C -0.07 -3.06 2.55 -10.79 -0.03 -3.09 16 8 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 9 C -0.13 -4.69 8.77 71.98 0.63 -4.06 16 10 C 0.03 1.82 4.45 29.85 0.13 1.95 16 11 C -0.53 -30.29 8.41 25.60 0.22 -30.07 16 12 H 0.06 3.37 7.05 -2.91 -0.02 3.35 16 13 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 14 N -0.94 -57.87 13.29 21.45 0.28 -57.59 16 15 Si 0.96 44.92 29.54 68.60 2.03 46.95 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 O -0.37 -8.65 8.76 -148.98 -1.30 -9.95 16 20 C 0.05 0.85 6.72 71.97 0.48 1.33 16 21 C -0.11 -1.70 6.00 29.85 0.18 -1.52 16 22 C -0.09 -1.68 5.78 -19.84 -0.11 -1.79 16 23 C -0.13 -2.00 9.67 22.32 0.22 -1.79 16 24 C -0.12 -1.79 10.05 22.24 0.22 -1.56 16 25 C -0.13 -2.09 10.05 22.23 0.22 -1.86 16 26 C -0.12 -2.25 8.38 22.32 0.19 -2.06 16 27 C -0.11 -2.34 3.76 -19.86 -0.07 -2.42 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.05 0.98 6.98 -2.39 -0.02 0.96 16 30 H 0.05 1.13 7.52 -2.39 -0.02 1.11 16 31 H 0.07 1.89 7.58 -2.39 -0.02 1.88 16 32 H 0.08 1.63 6.52 -2.38 -0.02 1.62 16 33 H 0.08 2.02 8.05 -2.38 -0.02 2.00 16 34 H 0.03 0.68 6.48 -2.39 -0.02 0.67 16 35 H 0.35 10.04 6.37 -89.70 -0.57 9.47 16 36 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 38 H 0.06 2.00 6.68 -2.39 -0.02 1.99 16 39 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.05 1.89 6.95 -2.39 -0.02 1.87 16 41 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 42 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 43 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 44 H 0.05 0.94 6.21 -2.38 -0.01 0.93 16 45 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 49 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 50 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 51 H 0.13 2.26 6.52 -2.91 -0.02 2.25 16 Total: -1.00 -65.95 389.58 2.78 -63.16 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.32 Total: 22.55 kcal Atomic # 6 Polarization: -46.59 SS G_CDS: 4.38 Total: -42.21 kcal Atomic # 7 Polarization: -77.86 SS G_CDS: -2.65 Total: -80.51 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -1.30 Total: -9.95 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -65.95 2.78 -63.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602668689.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.245 kcal (2) G-P(sol) polarization free energy of solvation -65.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds