Wall clock time and date at job start Tue Mar 31 2020 11:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35894 * 117.00011 * 2 1 4 4 C 1.38749 * 120.05578 * 359.97055 * 3 2 1 5 5 C 1.38134 * 119.94345 * 179.75264 * 4 3 2 6 6 C 1.50701 * 119.97152 * 180.27644 * 5 4 3 7 7 C 1.38283 * 120.05401 * 0.54654 * 5 4 3 8 8 C 1.50696 * 119.94472 * 179.72780 * 7 5 4 9 9 H 1.08998 * 109.47089 * 33.38970 * 8 7 5 10 10 C 1.53007 * 109.46878 * 273.39223 * 8 7 5 11 11 N 1.46897 * 109.47411 * 153.39676 * 8 7 5 12 12 C 1.46845 * 111.00148 * 170.20956 * 11 8 7 13 13 C 1.53035 * 109.52407 * 185.83627 * 12 11 8 14 14 C 1.53126 * 109.27678 * 300.81990 * 13 12 11 15 15 C 1.53119 * 109.16086 * 57.65732 * 14 13 12 16 16 H 1.09005 * 109.53764 * 62.30241 * 15 14 13 17 17 C 1.50694 * 109.50452 * 182.40377 * 15 14 13 18 18 H 1.08003 * 120.00180 * 119.51879 * 17 15 14 19 19 C 1.37882 * 119.99949 * 299.80115 * 17 15 14 20 20 N 1.31515 * 119.99996 * 179.97438 * 19 17 15 21 21 Si 1.86798 * 119.99802 * 0.02562 * 19 17 15 22 22 H 1.48501 * 109.47459 * 90.00101 * 21 19 17 23 23 H 1.48508 * 109.46677 * 209.99909 * 21 19 17 24 24 H 1.48494 * 109.47130 * 329.99878 * 21 19 17 25 25 C 1.46849 * 110.99553 * 294.41858 * 11 8 7 26 26 C 1.38250 * 120.11153 * 359.45656 * 7 5 4 27 27 C 1.38161 * 120.05604 * 0.27229 * 26 7 5 28 28 C 1.50703 * 120.02951 * 180.02562 * 27 26 7 29 29 H 1.08998 * 109.46870 * 60.00461 * 1 2 3 30 30 H 1.08997 * 109.47012 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.46942 * 299.99992 * 1 2 3 32 32 H 1.08002 * 120.03073 * 0.02562 * 4 3 2 33 33 H 1.08999 * 109.46798 * 270.27429 * 6 5 4 34 34 H 1.09001 * 109.47266 * 30.27418 * 6 5 4 35 35 H 1.09005 * 109.46892 * 150.27096 * 6 5 4 36 36 H 1.09002 * 109.46705 * 179.97438 * 10 8 7 37 37 H 1.08993 * 109.47396 * 300.00076 * 10 8 7 38 38 H 1.08997 * 109.46883 * 60.00440 * 10 8 7 39 39 H 1.08995 * 109.46339 * 305.85336 * 12 11 8 40 40 H 1.09004 * 109.46479 * 65.82400 * 12 11 8 41 41 H 1.08999 * 109.50711 * 60.75784 * 13 12 11 42 42 H 1.08997 * 109.50466 * 180.87932 * 13 12 11 43 43 H 1.08994 * 109.52317 * 297.74944 * 14 13 12 44 44 H 1.09007 * 109.52060 * 177.55967 * 14 13 12 45 45 H 0.96996 * 120.00164 * 179.97438 * 20 19 17 46 46 H 1.08994 * 109.46668 * 54.14638 * 25 11 8 47 47 H 1.09002 * 109.46262 * 294.17201 * 25 11 8 48 48 H 1.07997 * 119.96973 * 180.24476 * 26 7 5 49 49 H 1.08998 * 109.47412 * 89.99607 * 28 27 26 50 50 H 1.08996 * 109.46795 * 209.99671 * 28 27 26 51 51 H 1.08998 * 109.46470 * 329.99802 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 -0.0006 5 6 1.9210 3.6047 0.0046 6 6 1.1020 4.8698 0.0102 7 6 3.3020 3.6757 -0.0011 8 6 3.9861 5.0184 -0.0016 9 1 3.3890 5.7307 0.5676 10 6 4.1356 5.5140 -1.4415 11 7 5.3144 4.8915 0.6128 12 6 6.1010 6.1170 0.4237 13 6 7.5227 5.8978 0.9459 14 6 7.4647 5.5304 2.4312 15 6 6.6000 4.2789 2.6060 16 1 7.0567 3.4433 2.0755 17 6 6.4891 3.9444 4.0711 18 1 5.5210 3.9281 4.5496 19 6 7.6242 3.6650 4.8023 20 7 7.5276 3.3736 6.0811 21 14 9.2995 3.7018 3.9767 22 1 9.8714 5.0685 4.0779 23 1 10.2043 2.7354 4.6499 24 1 9.1547 3.3305 2.5463 25 6 5.2050 4.5450 2.0356 26 6 4.0560 2.5170 -0.0005 27 6 3.4312 1.2848 -0.0001 28 6 4.2538 0.0220 0.0011 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 0.2128 2.3203 -0.0007 33 1 0.9003 5.1765 -1.0161 34 1 0.1596 4.6903 0.5277 35 1 1.6539 5.6576 0.5231 36 1 4.6301 6.4855 -1.4418 37 1 4.7327 4.8018 -2.0108 38 1 3.1501 5.6083 -1.8974 39 1 6.1379 6.3648 -0.6370 40 1 5.6351 6.9359 0.9719 41 1 7.9942 5.0882 0.3889 42 1 8.1018 6.8126 0.8196 43 1 7.0288 6.3558 2.9939 44 1 8.4721 5.3310 2.7968 45 1 8.3260 3.1767 6.5954 46 1 4.5911 3.6511 2.1456 47 1 4.7433 5.3713 2.5762 48 1 5.1344 2.5752 -0.0010 49 1 4.4517 -0.2817 1.0290 50 1 3.7066 -0.7684 -0.5124 51 1 5.1980 0.2032 -0.5125 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602709985.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:38 Heat of formation + Delta-G solvation = -16.314953 kcal Electronic energy + Delta-G solvation = -28188.422734 eV Core-core repulsion = 24666.628639 eV Total energy + Delta-G solvation = -3521.794095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.41819 -38.96561 -37.38623 -34.69736 -33.56763 -32.33340 -30.49603 -30.09716 -29.15900 -28.71443 -27.50228 -25.04125 -24.55801 -23.88711 -22.55776 -21.57381 -20.58814 -19.51821 -18.84971 -17.38073 -16.79432 -16.45047 -15.80070 -15.64446 -15.12299 -14.49905 -14.31246 -14.17065 -13.95504 -13.60673 -13.44520 -13.13405 -12.95971 -12.89631 -12.82224 -12.64993 -12.44662 -12.31637 -12.16700 -11.96685 -11.74895 -11.70397 -11.65702 -11.35823 -11.03196 -11.00467 -10.70912 -10.55046 -10.52918 -10.33755 -10.00955 -9.87623 -9.61925 -9.04785 -8.87659 -8.47838 -8.40760 -7.78110 -7.75181 -6.02097 -4.00664 1.52237 1.63524 3.31558 3.33510 3.42750 3.46107 3.88052 4.30683 4.46642 4.79569 4.91865 4.96261 5.03335 5.06396 5.16503 5.29152 5.34035 5.35050 5.36305 5.49822 5.51080 5.57897 5.61501 5.66816 5.74359 5.78690 5.85128 5.86829 5.92404 5.97510 6.00474 6.07859 6.21272 6.24160 6.28089 6.35240 6.37405 6.45257 6.50329 6.55759 6.64452 6.68531 6.81031 6.88790 6.94794 7.06505 7.27548 7.46844 7.51015 7.69398 7.70795 7.92305 8.58066 9.01825 9.60922 11.11356 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012989 B = 0.004464 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.210184 B = 6271.135218 C = 7452.407071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.121 3.879 4 C -0.209 4.209 5 C -0.054 4.054 6 C -0.116 4.116 7 C -0.103 4.103 8 C 0.123 3.877 9 H 0.047 0.953 10 C -0.142 4.142 11 N -0.536 5.536 12 C 0.059 3.941 13 C -0.119 4.119 14 C -0.123 4.123 15 C 0.022 3.978 16 H 0.034 0.966 17 C -0.511 4.511 18 H 0.071 0.929 19 C 0.071 3.929 20 N -0.903 5.903 21 Si 0.887 3.113 22 H -0.281 1.281 23 H -0.299 1.299 24 H -0.263 1.263 25 C 0.076 3.924 26 C -0.046 4.046 27 C -0.123 4.123 28 C -0.103 4.103 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.122 0.878 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.026 0.974 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.045 0.955 45 H 0.263 0.737 46 H 0.070 0.930 47 H 0.023 0.977 48 H 0.144 0.856 49 H 0.069 0.931 50 H 0.063 0.937 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.131 0.277 -16.677 20.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.076 3.924 4 C -0.228 4.228 5 C -0.055 4.055 6 C -0.172 4.172 7 C -0.103 4.103 8 C 0.014 3.986 9 H 0.065 0.935 10 C -0.200 4.200 11 N -0.261 5.261 12 C -0.068 4.068 13 C -0.157 4.157 14 C -0.160 4.160 15 C 0.003 3.997 16 H 0.052 0.948 17 C -0.550 4.550 18 H 0.089 0.911 19 C -0.131 4.131 20 N -0.542 5.542 21 Si 0.718 3.282 22 H -0.208 1.208 23 H -0.227 1.227 24 H -0.188 1.188 25 C -0.050 4.050 26 C -0.064 4.064 27 C -0.124 4.124 28 C -0.159 4.159 29 H 0.070 0.930 30 H 0.114 0.886 31 H 0.072 0.928 32 H 0.140 0.860 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.045 0.955 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.089 0.911 47 H 0.041 0.959 48 H 0.162 0.838 49 H 0.088 0.912 50 H 0.082 0.918 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.714 -0.340 -16.749 20.441 hybrid contribution 0.194 0.861 0.322 0.939 sum -11.520 0.520 -16.426 20.070 Atomic orbital electron populations 1.22982 0.79070 1.03457 1.01103 1.86049 1.20758 1.27188 1.89000 1.18787 0.91812 0.83826 0.97933 1.20886 0.99259 0.91738 1.10936 1.19405 0.93199 0.94325 0.98540 1.20843 0.99151 0.95251 1.01990 1.19476 0.92072 0.95080 1.03696 1.20424 0.89910 0.92834 0.95389 0.93524 1.21916 1.01557 1.01086 0.95409 1.61997 1.13275 1.33856 1.16938 1.22074 0.94452 0.90518 0.99790 1.21651 0.95327 1.00438 0.98258 1.22032 1.00134 1.00568 0.93293 1.19140 0.90932 0.93204 0.96432 0.94758 1.21003 0.95158 1.46795 0.92003 0.91090 1.24976 0.98976 0.94527 0.94584 1.69903 1.29301 1.47920 1.07061 0.86835 0.84244 0.76971 0.80145 1.20818 1.22704 1.18789 1.22117 0.99657 0.99316 0.83949 1.20941 1.01080 0.89604 0.94769 1.19310 0.90353 0.96422 1.06274 1.20577 0.98596 0.94262 1.02502 0.93032 0.88620 0.92838 0.86018 0.91316 0.91930 0.91094 0.92227 0.91725 0.92613 0.91199 0.95545 0.91850 0.92916 0.92673 0.93649 0.92770 0.91146 0.95873 0.83791 0.91225 0.91790 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.20 9.54 -19.41 -0.19 -4.39 16 3 C 0.12 1.76 6.66 -39.22 -0.26 1.50 16 4 C -0.21 -2.78 8.69 -39.43 -0.34 -3.12 16 5 C -0.05 -0.73 5.88 -104.64 -0.62 -1.35 16 6 C -0.12 -1.24 9.58 36.01 0.34 -0.89 16 7 C -0.10 -1.53 4.21 -104.60 -0.44 -1.97 16 8 C 0.12 1.76 1.83 -68.86 -0.13 1.63 16 9 H 0.05 0.68 6.07 -51.93 -0.32 0.36 16 10 C -0.14 -1.67 8.61 37.16 0.32 -1.35 16 11 N -0.54 -9.01 3.46 -228.08 -0.79 -9.80 16 12 C 0.06 0.93 4.99 -3.84 -0.02 0.91 16 13 C -0.12 -2.06 6.09 -26.65 -0.16 -2.23 16 14 C -0.12 -2.65 4.74 -26.60 -0.13 -2.78 16 15 C 0.02 0.52 1.85 -91.69 -0.17 0.35 16 16 H 0.03 0.85 7.20 -51.93 -0.37 0.47 16 17 C -0.51 -14.44 9.14 -34.44 -0.31 -14.76 16 18 H 0.07 2.18 7.99 -52.48 -0.42 1.77 16 19 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 20 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 21 Si 0.89 22.29 24.36 -169.99 -4.14 18.15 16 22 H -0.28 -6.89 6.89 56.52 0.39 -6.50 16 23 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 24 H -0.26 -6.34 6.53 56.52 0.37 -5.97 16 25 C 0.08 1.56 4.27 -3.83 -0.02 1.55 16 26 C -0.05 -0.73 7.71 -39.61 -0.31 -1.04 16 27 C -0.12 -1.90 5.89 -104.47 -0.62 -2.51 16 28 C -0.10 -1.43 9.79 36.01 0.35 -1.07 16 29 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 30 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 32 H 0.12 1.31 6.30 -52.49 -0.33 0.98 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 35 H 0.07 0.78 5.99 -51.93 -0.31 0.47 16 36 H 0.06 0.65 6.19 -51.93 -0.32 0.32 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.58 8.12 -51.93 -0.42 0.16 16 39 H 0.07 0.93 5.83 -51.93 -0.30 0.63 16 40 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.05 1.04 3.37 -51.92 -0.17 0.87 16 45 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 46 H 0.07 1.51 6.28 -51.93 -0.33 1.19 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.14 2.44 7.25 -52.49 -0.38 2.06 16 49 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 50 H 0.06 0.82 7.53 -51.93 -0.39 0.43 16 51 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 LS Contribution 378.24 15.07 5.70 5.70 Total: -1.00 -31.20 378.24 -8.93 -40.14 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -8.69 Total: 1.31 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: -1.60 Total: -23.92 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: -0.02 Total: -36.99 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -0.19 Total: -4.39 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.14 Total: 18.15 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.20 -8.93 -40.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602709985.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.822 kcal (2) G-P(sol) polarization free energy of solvation -31.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds