Wall clock time and date at job start Tue Mar 31 2020 11:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35894 * 117.00011 * 2 1 4 4 C 1.38749 * 120.05578 * 359.97055 * 3 2 1 5 5 C 1.38134 * 119.94345 * 179.75264 * 4 3 2 6 6 C 1.50701 * 119.97152 * 180.27644 * 5 4 3 7 7 C 1.38283 * 120.05401 * 0.54654 * 5 4 3 8 8 C 1.50696 * 119.94472 * 179.72780 * 7 5 4 9 9 H 1.08998 * 109.47089 * 33.38970 * 8 7 5 10 10 C 1.53007 * 109.46878 * 273.39223 * 8 7 5 11 11 N 1.46897 * 109.47411 * 153.39676 * 8 7 5 12 12 C 1.46845 * 111.00148 * 170.20956 * 11 8 7 13 13 C 1.53035 * 109.52407 * 185.83627 * 12 11 8 14 14 C 1.53126 * 109.27678 * 300.81990 * 13 12 11 15 15 C 1.53119 * 109.16086 * 57.65732 * 14 13 12 16 16 H 1.09005 * 109.53764 * 62.30241 * 15 14 13 17 17 C 1.50694 * 109.50452 * 182.40377 * 15 14 13 18 18 H 1.08003 * 120.00180 * 119.51879 * 17 15 14 19 19 C 1.37882 * 119.99949 * 299.80115 * 17 15 14 20 20 N 1.31515 * 119.99996 * 179.97438 * 19 17 15 21 21 Si 1.86798 * 119.99802 * 0.02562 * 19 17 15 22 22 H 1.48501 * 109.47459 * 90.00101 * 21 19 17 23 23 H 1.48508 * 109.46677 * 209.99909 * 21 19 17 24 24 H 1.48494 * 109.47130 * 329.99878 * 21 19 17 25 25 C 1.46849 * 110.99553 * 294.41858 * 11 8 7 26 26 C 1.38250 * 120.11153 * 359.45656 * 7 5 4 27 27 C 1.38161 * 120.05604 * 0.27229 * 26 7 5 28 28 C 1.50703 * 120.02951 * 180.02562 * 27 26 7 29 29 H 1.08998 * 109.46870 * 60.00461 * 1 2 3 30 30 H 1.08997 * 109.47012 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.46942 * 299.99992 * 1 2 3 32 32 H 1.08002 * 120.03073 * 0.02562 * 4 3 2 33 33 H 1.08999 * 109.46798 * 270.27429 * 6 5 4 34 34 H 1.09001 * 109.47266 * 30.27418 * 6 5 4 35 35 H 1.09005 * 109.46892 * 150.27096 * 6 5 4 36 36 H 1.09002 * 109.46705 * 179.97438 * 10 8 7 37 37 H 1.08993 * 109.47396 * 300.00076 * 10 8 7 38 38 H 1.08997 * 109.46883 * 60.00440 * 10 8 7 39 39 H 1.08995 * 109.46339 * 305.85336 * 12 11 8 40 40 H 1.09004 * 109.46479 * 65.82400 * 12 11 8 41 41 H 1.08999 * 109.50711 * 60.75784 * 13 12 11 42 42 H 1.08997 * 109.50466 * 180.87932 * 13 12 11 43 43 H 1.08994 * 109.52317 * 297.74944 * 14 13 12 44 44 H 1.09007 * 109.52060 * 177.55967 * 14 13 12 45 45 H 0.96996 * 120.00164 * 179.97438 * 20 19 17 46 46 H 1.08994 * 109.46668 * 54.14638 * 25 11 8 47 47 H 1.09002 * 109.46262 * 294.17201 * 25 11 8 48 48 H 1.07997 * 119.96973 * 180.24476 * 26 7 5 49 49 H 1.08998 * 109.47412 * 89.99607 * 28 27 26 50 50 H 1.08996 * 109.46795 * 209.99671 * 28 27 26 51 51 H 1.08998 * 109.46470 * 329.99802 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 -0.0006 5 6 1.9210 3.6047 0.0046 6 6 1.1020 4.8698 0.0102 7 6 3.3020 3.6757 -0.0011 8 6 3.9861 5.0184 -0.0016 9 1 3.3890 5.7307 0.5676 10 6 4.1356 5.5140 -1.4415 11 7 5.3144 4.8915 0.6128 12 6 6.1010 6.1170 0.4237 13 6 7.5227 5.8978 0.9459 14 6 7.4647 5.5304 2.4312 15 6 6.6000 4.2789 2.6060 16 1 7.0567 3.4433 2.0755 17 6 6.4891 3.9444 4.0711 18 1 5.5210 3.9281 4.5496 19 6 7.6242 3.6650 4.8023 20 7 7.5276 3.3736 6.0811 21 14 9.2995 3.7018 3.9767 22 1 9.8714 5.0685 4.0779 23 1 10.2043 2.7354 4.6499 24 1 9.1547 3.3305 2.5463 25 6 5.2050 4.5450 2.0356 26 6 4.0560 2.5170 -0.0005 27 6 3.4312 1.2848 -0.0001 28 6 4.2538 0.0220 0.0011 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 0.2128 2.3203 -0.0007 33 1 0.9003 5.1765 -1.0161 34 1 0.1596 4.6903 0.5277 35 1 1.6539 5.6576 0.5231 36 1 4.6301 6.4855 -1.4418 37 1 4.7327 4.8018 -2.0108 38 1 3.1501 5.6083 -1.8974 39 1 6.1379 6.3648 -0.6370 40 1 5.6351 6.9359 0.9719 41 1 7.9942 5.0882 0.3889 42 1 8.1018 6.8126 0.8196 43 1 7.0288 6.3558 2.9939 44 1 8.4721 5.3310 2.7968 45 1 8.3260 3.1767 6.5954 46 1 4.5911 3.6511 2.1456 47 1 4.7433 5.3713 2.5762 48 1 5.1344 2.5752 -0.0010 49 1 4.4517 -0.2817 1.0290 50 1 3.7066 -0.7684 -0.5124 51 1 5.1980 0.2032 -0.5125 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602709985.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:38 Heat of formation + Delta-G solvation = -34.329325 kcal Electronic energy + Delta-G solvation = -28189.203896 eV Core-core repulsion = 24666.628639 eV Total energy + Delta-G solvation = -3522.575257 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.49959 -40.22362 -38.57560 -36.14277 -34.81949 -34.13647 -32.15675 -31.40579 -30.20026 -29.80955 -28.32695 -26.76057 -25.80948 -25.22545 -23.80511 -22.91222 -21.96972 -20.70530 -20.44472 -18.81077 -18.34993 -17.71912 -17.10221 -16.65986 -16.31149 -16.10239 -15.75371 -15.40739 -15.23954 -14.80679 -14.72098 -14.63104 -14.22768 -14.15874 -14.03756 -13.97253 -13.73257 -13.67157 -13.21942 -13.17646 -12.92201 -12.76574 -12.66341 -12.64393 -12.47360 -12.45565 -12.08908 -11.96718 -11.75119 -11.67706 -11.56345 -11.49507 -11.32525 -10.98504 -10.72523 -10.59215 -9.52047 -9.12798 -8.83099 -8.29973 -6.33183 0.43252 0.53330 1.29406 1.36084 1.47440 2.33081 2.43924 2.77805 3.01810 3.06167 3.79166 3.87602 3.95333 4.06140 4.14008 4.20201 4.20573 4.33084 4.35912 4.40368 4.42421 4.50726 4.52577 4.63673 4.65262 4.72336 4.74218 4.76930 4.80774 4.82050 4.83735 4.87221 4.93460 4.96457 4.97481 5.05050 5.14354 5.16217 5.18707 5.27688 5.36126 5.39991 5.46860 5.49462 5.55018 5.65264 5.75189 5.79530 5.97607 6.20334 6.34857 6.41336 6.53043 6.74250 7.32239 8.87312 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012989 B = 0.004464 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.210184 B = 6271.135218 C = 7452.407071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.333 6.333 3 C 0.113 3.887 4 C -0.211 4.211 5 C -0.058 4.058 6 C -0.113 4.113 7 C -0.117 4.117 8 C 0.123 3.877 9 H 0.048 0.952 10 C -0.135 4.135 11 N -0.537 5.537 12 C 0.058 3.942 13 C -0.113 4.113 14 C -0.122 4.122 15 C 0.024 3.976 16 H 0.024 0.976 17 C -0.517 4.517 18 H 0.026 0.974 19 C 0.013 3.987 20 N -0.952 5.952 21 Si 0.952 3.048 22 H -0.266 1.266 23 H -0.300 1.300 24 H -0.247 1.247 25 C 0.095 3.905 26 C -0.062 4.062 27 C -0.149 4.149 28 C -0.098 4.098 29 H 0.066 0.934 30 H 0.118 0.882 31 H 0.057 0.943 32 H 0.148 0.852 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.105 0.895 40 H 0.029 0.971 41 H 0.064 0.936 42 H 0.083 0.917 43 H 0.046 0.954 44 H 0.034 0.966 45 H 0.265 0.735 46 H 0.050 0.950 47 H 0.008 0.992 48 H 0.127 0.873 49 H 0.056 0.944 50 H 0.072 0.928 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.712 1.771 -19.757 23.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.247 6.247 3 C 0.068 3.932 4 C -0.229 4.229 5 C -0.058 4.058 6 C -0.170 4.170 7 C -0.118 4.118 8 C 0.016 3.984 9 H 0.066 0.934 10 C -0.192 4.192 11 N -0.262 5.262 12 C -0.069 4.069 13 C -0.151 4.151 14 C -0.160 4.160 15 C 0.005 3.995 16 H 0.042 0.958 17 C -0.556 4.556 18 H 0.044 0.956 19 C -0.183 4.183 20 N -0.593 5.593 21 Si 0.779 3.221 22 H -0.192 1.192 23 H -0.228 1.228 24 H -0.171 1.171 25 C -0.033 4.033 26 C -0.080 4.080 27 C -0.149 4.149 28 C -0.155 4.155 29 H 0.085 0.915 30 H 0.136 0.864 31 H 0.076 0.924 32 H 0.166 0.834 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.123 0.877 40 H 0.047 0.953 41 H 0.082 0.918 42 H 0.102 0.898 43 H 0.065 0.935 44 H 0.052 0.948 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.026 0.974 48 H 0.144 0.856 49 H 0.074 0.926 50 H 0.091 0.909 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.317 1.166 -19.858 23.396 hybrid contribution 0.195 0.332 1.336 1.390 sum -12.121 1.498 -18.522 22.186 Atomic orbital electron populations 1.23298 0.76805 1.05348 1.02012 1.86024 1.23137 1.26747 1.88823 1.18929 0.91742 0.84843 0.97668 1.21204 1.00578 0.91175 1.09946 1.19772 0.92958 0.95759 0.97335 1.20894 0.99073 0.93498 1.03500 1.19644 0.92934 0.94962 1.04258 1.20534 0.88302 0.92696 0.96898 0.93387 1.21876 1.02829 1.01383 0.93092 1.61932 1.15261 1.35067 1.13909 1.22193 0.93079 0.89741 1.01887 1.21632 0.97053 1.01865 0.94551 1.21923 0.98486 0.98813 0.96765 1.19029 0.93366 0.94045 0.93092 0.95834 1.21323 0.93330 1.46288 0.94648 0.95552 1.25844 1.03276 0.94176 0.95032 1.70057 1.30578 1.49739 1.08899 0.85781 0.78944 0.77606 0.79726 1.19183 1.22834 1.17066 1.21688 0.97136 0.97982 0.86448 1.20861 1.00391 0.90568 0.96208 1.19518 0.91431 0.96622 1.07347 1.20535 0.98923 0.94244 1.01790 0.91502 0.86418 0.92404 0.83418 0.89109 0.90606 0.91512 0.90725 0.92229 0.90798 0.87669 0.95305 0.91765 0.89847 0.93521 0.94808 0.92627 0.93110 0.97392 0.85560 0.92568 0.90938 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.43 16 2 O -0.33 -8.61 9.54 -92.35 -0.88 -9.49 16 3 C 0.11 3.26 6.66 22.51 0.15 3.41 16 4 C -0.21 -5.26 8.69 22.37 0.19 -5.06 16 5 C -0.06 -1.47 5.88 -19.88 -0.12 -1.59 16 6 C -0.11 -2.10 9.58 71.24 0.68 -1.42 16 7 C -0.12 -3.43 4.21 -19.85 -0.08 -3.52 16 8 C 0.12 3.33 1.83 44.17 0.08 3.41 16 9 H 0.05 1.31 6.07 -2.39 -0.01 1.29 16 10 C -0.13 -2.71 8.61 71.98 0.62 -2.09 16 11 N -0.54 -17.46 3.46 -875.52 -3.03 -20.49 16 12 C 0.06 1.64 4.99 86.33 0.43 2.07 16 13 C -0.11 -3.59 6.09 30.65 0.19 -3.41 16 14 C -0.12 -5.16 4.74 30.68 0.15 -5.02 16 15 C 0.02 1.15 1.85 -11.49 -0.02 1.13 16 16 H 0.02 1.18 7.20 -2.38 -0.02 1.16 16 17 C -0.52 -30.65 9.14 25.60 0.23 -30.42 16 18 H 0.03 1.74 7.99 -2.91 -0.02 1.71 16 19 C 0.01 0.80 5.45 84.66 0.46 1.26 16 20 N -0.95 -61.34 13.96 21.45 0.30 -61.04 16 21 Si 0.95 46.60 24.36 68.60 1.67 48.27 16 22 H -0.27 -12.29 6.89 99.48 0.69 -11.60 16 23 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 24 H -0.25 -11.31 6.53 99.48 0.65 -10.66 16 25 C 0.10 4.00 4.27 86.33 0.37 4.36 16 26 C -0.06 -2.03 7.71 22.25 0.17 -1.86 16 27 C -0.15 -4.70 5.89 -19.77 -0.12 -4.82 16 28 C -0.10 -2.84 9.79 71.24 0.70 -2.14 16 29 H 0.07 0.86 7.66 -2.39 -0.02 0.84 16 30 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 0.87 7.66 -2.39 -0.02 0.85 16 32 H 0.15 2.79 6.30 -2.91 -0.02 2.77 16 33 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 1.21 8.09 -2.39 -0.02 1.19 16 35 H 0.07 1.31 5.99 -2.38 -0.01 1.29 16 36 H 0.07 1.28 6.19 -2.39 -0.01 1.27 16 37 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 39 H 0.11 2.30 5.83 -2.39 -0.01 2.29 16 40 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.03 1.49 3.37 -2.38 -0.01 1.49 16 45 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 46 H 0.05 2.30 6.28 -2.39 -0.02 2.28 16 47 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 48 H 0.13 4.46 7.25 -2.91 -0.02 4.44 16 49 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.07 1.90 7.53 -2.39 -0.02 1.88 16 51 H 0.07 1.87 8.09 -2.39 -0.02 1.85 16 Total: -1.00 -71.40 378.24 4.08 -67.32 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.82 Total: 19.69 kcal Atomic # 6 Polarization: -49.45 SS G_CDS: 5.20 Total: -44.26 kcal Atomic # 7 Polarization: -78.79 SS G_CDS: -2.73 Total: -81.53 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.88 Total: -9.49 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.67 Total: 48.27 kcal Total: -71.40 4.08 -67.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602709985.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.991 kcal (2) G-P(sol) polarization free energy of solvation -71.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds