Wall clock time and date at job start Tue Mar 31 2020 11:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35899 * 116.99509 * 2 1 4 4 C 1.38752 * 120.06242 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94709 * 179.68647 * 4 3 2 6 6 C 1.50697 * 119.97335 * 180.31552 * 5 4 3 7 7 C 1.38291 * 120.05151 * 0.56293 * 5 4 3 8 8 C 1.50705 * 119.93989 * 179.73027 * 7 5 4 9 9 H 1.08997 * 109.47318 * 327.09778 * 8 7 5 10 10 C 1.52997 * 109.46902 * 87.10243 * 8 7 5 11 11 N 1.46896 * 109.46919 * 207.09668 * 8 7 5 12 12 C 1.46850 * 111.00120 * 188.29226 * 11 8 7 13 13 C 1.53039 * 109.52350 * 174.16503 * 12 11 8 14 14 C 1.53117 * 109.31205 * 59.15558 * 13 12 11 15 15 C 1.53118 * 109.16134 * 302.40794 * 14 13 12 16 16 H 1.08998 * 109.49871 * 297.63175 * 15 14 13 17 17 C 1.50702 * 109.50014 * 177.55565 * 15 14 13 18 18 H 1.08001 * 119.99749 * 239.79841 * 17 15 14 19 19 C 1.37875 * 120.00442 * 60.07828 * 17 15 14 20 20 N 1.31510 * 119.99649 * 359.97438 * 19 17 15 21 21 Si 1.86793 * 120.00094 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47257 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47058 * 120.00005 * 21 19 17 24 24 H 1.48507 * 109.47129 * 240.00054 * 21 19 17 25 25 C 1.46852 * 110.99714 * 64.08652 * 11 8 7 26 26 C 1.38240 * 120.11487 * 359.45667 * 7 5 4 27 27 C 1.38166 * 120.05606 * 0.24941 * 26 7 5 28 28 C 1.50698 * 120.03249 * 180.02562 * 27 26 7 29 29 H 1.09005 * 109.47294 * 60.00257 * 1 2 3 30 30 H 1.09003 * 109.46817 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47528 * 299.99988 * 1 2 3 32 32 H 1.07994 * 120.02490 * 359.95287 * 4 3 2 33 33 H 1.08996 * 109.47250 * 270.24522 * 6 5 4 34 34 H 1.08998 * 109.47122 * 30.24638 * 6 5 4 35 35 H 1.09001 * 109.47236 * 150.24904 * 6 5 4 36 36 H 1.09007 * 109.46857 * 180.02562 * 10 8 7 37 37 H 1.09000 * 109.47286 * 299.99301 * 10 8 7 38 38 H 1.08997 * 109.47513 * 59.99656 * 10 8 7 39 39 H 1.08999 * 109.46172 * 294.17931 * 12 11 8 40 40 H 1.08997 * 109.45929 * 54.14806 * 12 11 8 41 41 H 1.09004 * 109.50065 * 179.12501 * 13 12 11 42 42 H 1.09007 * 109.50121 * 299.19775 * 13 12 11 43 43 H 1.08997 * 109.55784 * 182.47589 * 14 13 12 44 44 H 1.09007 * 109.48870 * 62.29329 * 14 13 12 45 45 H 0.97004 * 120.00047 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.46330 * 65.82231 * 25 11 8 47 47 H 1.08998 * 109.46031 * 305.84738 * 25 11 8 48 48 H 1.07994 * 119.97369 * 180.27586 * 26 7 5 49 49 H 1.08994 * 109.46810 * 89.99858 * 28 27 26 50 50 H 1.08997 * 109.47193 * 210.00750 * 28 27 26 51 51 H 1.09005 * 109.46440 * 330.00018 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3754 0.0005 5 6 1.9208 3.6048 0.0071 6 6 1.1019 4.8698 0.0149 7 6 3.3018 3.6758 0.0013 8 6 3.9860 5.0186 0.0024 9 1 3.3797 5.7357 -0.5511 10 6 4.1587 5.5019 1.4437 11 7 5.3041 4.8971 -0.6345 12 6 6.0802 6.1339 -0.4783 13 6 7.4945 5.9225 -1.0233 14 6 7.4144 5.5315 -2.5015 15 6 6.5599 4.2686 -2.6416 16 1 7.0357 3.4463 -2.1073 17 6 6.4262 3.9110 -4.0995 18 1 5.4489 3.8666 -4.5571 19 6 7.5509 3.6346 -4.8476 20 7 8.7404 3.6837 -4.2891 21 14 7.3849 3.1906 -6.6544 22 1 5.9503 3.2042 -7.0377 23 1 8.1271 4.1793 -7.4772 24 1 7.9454 1.8348 -6.8844 25 6 5.1726 4.5280 -2.0498 26 6 4.0559 2.5172 0.0004 27 6 3.4311 1.2849 -0.0001 28 6 4.2537 0.0222 -0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2128 2.3204 0.0002 33 1 0.9000 5.1783 -1.0109 34 1 0.1596 4.6895 0.5322 35 1 1.6537 5.6568 0.5289 36 1 4.6531 6.4733 1.4444 37 1 3.1806 5.5921 1.9164 38 1 4.7649 4.7848 1.9972 39 1 5.5950 6.9392 -1.0298 40 1 6.1336 6.3981 0.5779 41 1 8.0655 6.8455 -0.9213 42 1 7.9855 5.1271 -0.4625 43 1 8.4170 5.3371 -2.8824 44 1 6.9595 6.3438 -3.0684 45 1 9.5317 3.4890 -4.8153 46 1 4.6918 5.3408 -2.5940 47 1 4.5670 3.6257 -2.1351 48 1 5.1343 2.5753 0.0004 49 1 4.4520 -0.2825 1.0270 50 1 3.7064 -0.7678 -0.5147 51 1 5.1977 0.2039 -0.5143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602709986.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:41 Heat of formation + Delta-G solvation = -25.229031 kcal Electronic energy + Delta-G solvation = -28113.842879 eV Core-core repulsion = 24591.662240 eV Total energy + Delta-G solvation = -3522.180638 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.36863 -38.81858 -37.23303 -34.53746 -33.51905 -32.23752 -30.20404 -29.77120 -29.10067 -28.46993 -27.45973 -25.00919 -24.57474 -23.59014 -22.33510 -21.53582 -20.61244 -19.44442 -18.57126 -17.35357 -16.64678 -16.17386 -15.75433 -15.30771 -14.98442 -14.61054 -14.16777 -14.05342 -13.77663 -13.57419 -13.31674 -13.08880 -12.83502 -12.66052 -12.59914 -12.51586 -12.45297 -12.20666 -11.86562 -11.73253 -11.69040 -11.59248 -11.54831 -11.24817 -10.93725 -10.77536 -10.61271 -10.57361 -10.47271 -10.38807 -9.95429 -9.77593 -9.41243 -8.96421 -8.64912 -8.37483 -8.25616 -7.72117 -7.60376 -5.93208 -3.98519 1.55719 1.67717 3.32514 3.35752 3.40617 3.44758 3.91519 4.39333 4.55137 4.83089 4.98501 5.00329 5.05590 5.07227 5.23720 5.35261 5.37070 5.40302 5.49567 5.56742 5.63414 5.67043 5.75615 5.77591 5.83312 5.88258 5.92665 5.96197 6.01578 6.04658 6.15585 6.27313 6.30367 6.42127 6.46498 6.50415 6.55950 6.61470 6.68158 6.78151 6.80869 6.94614 7.05956 7.11533 7.27407 7.46359 7.54208 7.73611 7.80941 7.90433 8.13931 8.22670 8.54193 9.05627 9.65602 11.12756 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011391 B = 0.004503 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.395094 B = 6215.941277 C = 7648.211238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.120 3.880 4 C -0.210 4.210 5 C -0.055 4.055 6 C -0.116 4.116 7 C -0.101 4.101 8 C 0.122 3.878 9 H 0.042 0.958 10 C -0.143 4.143 11 N -0.531 5.531 12 C 0.060 3.940 13 C -0.116 4.116 14 C -0.111 4.111 15 C 0.057 3.943 16 H 0.033 0.967 17 C -0.511 4.511 18 H 0.052 0.948 19 C 0.064 3.936 20 N -0.888 5.888 21 Si 0.887 3.113 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.067 3.933 26 C -0.044 4.044 27 C -0.123 4.123 28 C -0.103 4.103 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.051 0.949 32 H 0.121 0.879 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.021 0.979 40 H 0.064 0.936 41 H 0.045 0.955 42 H 0.060 0.940 43 H 0.090 0.910 44 H 0.028 0.972 45 H 0.258 0.742 46 H 0.015 0.985 47 H 0.063 0.937 48 H 0.146 0.854 49 H 0.062 0.938 50 H 0.064 0.936 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.964 -0.610 12.224 18.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.075 3.925 4 C -0.229 4.229 5 C -0.056 4.056 6 C -0.172 4.172 7 C -0.101 4.101 8 C 0.014 3.986 9 H 0.060 0.940 10 C -0.200 4.200 11 N -0.256 5.256 12 C -0.068 4.068 13 C -0.154 4.154 14 C -0.149 4.149 15 C 0.038 3.962 16 H 0.051 0.949 17 C -0.550 4.550 18 H 0.070 0.930 19 C -0.137 4.137 20 N -0.527 5.527 21 Si 0.715 3.285 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.060 4.060 26 C -0.062 4.062 27 C -0.124 4.124 28 C -0.160 4.160 29 H 0.071 0.929 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.139 0.861 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.039 0.961 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.079 0.921 43 H 0.108 0.892 44 H 0.047 0.953 45 H 0.068 0.932 46 H 0.033 0.967 47 H 0.081 0.919 48 H 0.163 0.837 49 H 0.081 0.919 50 H 0.083 0.917 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.444 -1.198 12.415 18.339 hybrid contribution -0.873 0.581 -1.573 1.890 sum -14.317 -0.617 10.842 17.969 Atomic orbital electron populations 1.22975 0.79148 1.03398 1.01074 1.86049 1.20692 1.27223 1.89054 1.18793 0.91829 0.83781 0.98108 1.20870 0.99197 0.91755 1.11078 1.19417 0.93234 0.94289 0.98632 1.20834 0.98923 0.95193 1.02288 1.19517 0.92014 0.95200 1.03396 1.20391 0.90402 0.92597 0.95238 0.94004 1.21932 1.01382 1.01258 0.95459 1.62014 1.13675 1.32887 1.17039 1.22109 0.95311 0.90071 0.99329 1.21670 0.94243 0.99825 0.99696 1.21655 1.04114 0.97839 0.91280 1.18641 0.88895 0.94088 0.94555 0.94865 1.21184 0.92679 1.46212 0.94901 0.92962 1.24904 0.95392 0.95419 0.98021 1.69898 0.97559 1.49564 1.35727 0.86618 0.78068 0.78038 0.85760 1.19918 1.21142 1.21052 1.22341 1.01013 0.98391 0.84223 1.20969 1.01188 0.89568 0.94504 1.19315 0.90304 0.96442 1.06325 1.20579 0.99294 0.94360 1.01734 0.92920 0.88660 0.93025 0.86088 0.91252 0.92001 0.91165 0.92214 0.92717 0.91680 0.96081 0.91773 0.93669 0.92125 0.89175 0.95312 0.93200 0.96675 0.91885 0.83681 0.91929 0.91661 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.27 9.54 -19.42 -0.19 -4.46 16 3 C 0.12 1.78 6.66 -39.21 -0.26 1.52 16 4 C -0.21 -2.86 8.69 -39.43 -0.34 -3.20 16 5 C -0.06 -0.77 5.88 -104.65 -0.62 -1.39 16 6 C -0.12 -1.29 9.20 36.00 0.33 -0.96 16 7 C -0.10 -1.57 4.17 -104.60 -0.44 -2.01 16 8 C 0.12 1.87 1.59 -68.87 -0.11 1.76 16 9 H 0.04 0.65 6.86 -51.93 -0.36 0.30 16 10 C -0.14 -1.82 8.50 37.16 0.32 -1.50 16 11 N -0.53 -9.59 3.50 -228.08 -0.80 -10.39 16 12 C 0.06 1.03 5.03 -3.83 -0.02 1.01 16 13 C -0.12 -2.25 6.09 -26.65 -0.16 -2.41 16 14 C -0.11 -2.62 5.03 -26.61 -0.13 -2.75 16 15 C 0.06 1.42 2.26 -91.69 -0.21 1.22 16 16 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 17 C -0.51 -14.13 8.56 -34.44 -0.29 -14.43 16 18 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 19 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 20 N -0.89 -25.39 11.35 55.43 0.63 -24.76 16 21 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 C 0.07 1.44 4.26 -3.83 -0.02 1.43 16 26 C -0.04 -0.74 7.65 -39.61 -0.30 -1.04 16 27 C -0.12 -1.96 5.89 -104.47 -0.62 -2.57 16 28 C -0.10 -1.47 9.79 36.00 0.35 -1.12 16 29 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 32 H 0.12 1.34 6.30 -52.49 -0.33 1.01 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 35 H 0.07 0.74 5.60 -51.93 -0.29 0.45 16 36 H 0.06 0.71 6.19 -51.93 -0.32 0.39 16 37 H 0.05 0.61 7.11 -51.93 -0.37 0.24 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.96 5.84 -51.93 -0.30 0.65 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.09 2.39 6.15 -51.93 -0.32 2.07 16 44 H 0.03 0.68 8.14 -51.92 -0.42 0.26 16 45 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.06 1.40 6.18 -51.93 -0.32 1.08 16 48 H 0.15 2.60 7.28 -52.49 -0.38 2.22 16 49 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 50 H 0.06 0.91 7.53 -51.93 -0.39 0.52 16 51 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 LS Contribution 383.64 15.07 5.78 5.78 Total: -1.00 -29.34 383.64 -10.00 -39.34 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -8.79 Total: 1.50 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: -1.62 Total: -23.52 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: -0.17 Total: -35.15 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.19 Total: -4.46 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.34 -10.00 -39.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602709986.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.111 kcal (2) G-P(sol) polarization free energy of solvation -29.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds