Wall clock time and date at job start Tue Mar 31 2020 12:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46825 * 2 1 4 4 C 1.50698 * 109.47113 * 119.99290 * 2 1 3 5 5 C 1.38274 * 119.94332 * 120.00510 * 4 2 1 6 6 C 1.38138 * 120.06030 * 179.97438 * 5 4 2 7 7 C 1.38737 * 119.93939 * 359.97438 * 6 5 4 8 8 O 1.35906 * 120.05266 * 180.02562 * 7 6 5 9 9 C 1.42896 * 116.99841 * 354.54157 * 8 7 6 10 10 C 1.53127 * 109.52058 * 204.82718 * 9 8 7 11 11 C 1.53039 * 109.27906 * 182.43982 * 10 9 8 12 12 N 1.46847 * 109.52048 * 59.17809 * 11 10 9 13 13 C 1.46904 * 111.00063 * 174.16071 * 12 11 10 14 14 C 1.52991 * 109.47374 * 170.00380 * 13 12 11 15 15 C 1.50702 * 109.47471 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99603 * 359.97438 * 15 14 13 17 17 C 1.37869 * 120.00375 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00080 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00263 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46946 * 89.99716 * 19 17 15 21 21 H 1.48496 * 109.47307 * 209.99813 * 19 17 15 22 22 H 1.48502 * 109.46752 * 330.00220 * 19 17 15 23 23 C 1.46844 * 111.20413 * 298.25988 * 12 11 10 24 24 C 1.53035 * 109.52483 * 61.73793 * 23 12 11 25 25 C 1.38730 * 119.89406 * 0.27406 * 7 6 5 26 26 C 1.38150 * 119.93649 * 359.47463 * 25 7 6 27 27 H 1.09001 * 109.47154 * 299.99837 * 1 2 3 28 28 H 1.08992 * 109.46859 * 60.00463 * 1 2 3 29 29 H 1.09000 * 109.46505 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47448 * 239.99768 * 2 1 3 31 31 H 1.08997 * 109.47297 * 59.99675 * 3 2 1 32 32 H 1.09002 * 109.47084 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46936 * 299.99421 * 3 2 1 34 34 H 1.07997 * 119.96801 * 359.97438 * 5 4 2 35 35 H 1.08001 * 120.03130 * 179.97438 * 6 5 4 36 36 H 1.09004 * 109.52623 * 324.95466 * 9 8 7 37 37 H 1.09005 * 109.50135 * 62.50398 * 10 9 8 38 38 H 1.08991 * 109.50394 * 302.38330 * 10 9 8 39 39 H 1.08998 * 109.46398 * 299.16927 * 11 10 9 40 40 H 1.08996 * 109.45618 * 179.19076 * 11 10 9 41 41 H 1.09000 * 109.47017 * 49.99801 * 13 12 11 42 42 H 1.09000 * 109.46831 * 290.00574 * 13 12 11 43 43 H 1.09000 * 109.47301 * 299.99907 * 14 13 12 44 44 H 1.09000 * 109.47521 * 59.99730 * 14 13 12 45 45 H 0.96999 * 120.00353 * 180.02562 * 18 17 15 46 46 H 1.08994 * 109.46576 * 181.76168 * 23 12 11 47 47 H 1.09005 * 109.46143 * 301.72792 * 23 12 11 48 48 H 1.08995 * 109.50898 * 180.88175 * 24 23 12 49 49 H 1.09006 * 109.50178 * 60.76187 * 24 23 12 50 50 H 1.07993 * 120.02977 * 179.71970 * 25 7 6 51 51 H 1.08003 * 119.96984 * 180.23117 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7102 1.2305 5 6 2.8273 -1.8343 1.1024 6 6 3.2895 -2.4870 2.2288 7 6 2.9559 -2.0133 3.4894 8 8 3.4098 -2.6532 4.5991 9 6 4.1247 -3.8739 4.3971 10 6 4.0181 -4.7431 5.6533 11 6 4.8356 -6.0215 5.4541 12 7 6.2384 -5.6717 5.1965 13 6 7.0787 -6.8752 5.1376 14 6 8.4709 -6.5006 4.6257 15 6 9.3328 -7.7353 4.5646 16 1 8.9281 -8.6915 4.8616 17 6 10.6379 -7.6442 4.1296 18 7 11.1309 -6.4796 3.7684 19 14 11.7065 -9.1746 4.0545 20 1 11.5674 -9.8104 2.7197 21 1 13.1256 -8.7989 4.2784 22 1 11.2758 -10.1310 5.1057 23 6 6.3708 -4.8768 3.9690 24 6 5.5991 -3.5643 4.1238 25 6 2.1539 -0.8883 3.6153 26 6 1.6985 -0.2363 2.4857 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4426 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 3.0871 -2.2024 0.1209 35 1 3.9101 -3.3651 2.1282 36 1 3.7002 -4.4084 3.5472 37 1 2.9741 -5.0025 5.8288 38 1 4.4061 -4.1930 6.5105 39 1 4.4384 -6.5779 4.6052 40 1 4.7734 -6.6358 6.3522 41 1 6.6265 -7.6014 4.4621 42 1 7.1625 -7.3090 6.1340 43 1 8.3872 -6.0668 3.6293 44 1 8.9232 -5.7744 5.3012 45 1 12.0490 -6.4156 3.4620 46 1 7.4236 -4.6600 3.7885 47 1 5.9663 -5.4387 3.1271 48 1 5.6846 -2.9815 3.2068 49 1 6.0120 -2.9956 4.9571 50 1 1.8891 -0.5203 4.5955 51 1 1.0772 0.6418 2.5832 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603850429.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:24 Heat of formation + Delta-G solvation = -33.855407 kcal Electronic energy + Delta-G solvation = -26270.902392 eV Core-core repulsion = 22748.347686 eV Total energy + Delta-G solvation = -3522.554706 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.57740 -39.00120 -37.63091 -35.04313 -33.72742 -32.25046 -31.21566 -30.68939 -29.29771 -28.57192 -27.42849 -25.19746 -23.76569 -23.28465 -22.65122 -22.40483 -20.49017 -19.96419 -19.45159 -18.27507 -16.68784 -16.21219 -15.97184 -15.42116 -14.93793 -14.82640 -14.68737 -14.49446 -14.20133 -14.00212 -13.79050 -13.60894 -13.50236 -13.14288 -13.03711 -12.81596 -12.59235 -12.50582 -12.29325 -11.91129 -11.74942 -11.52705 -11.32595 -11.18316 -11.09263 -11.02923 -10.98436 -10.92659 -10.57680 -10.55952 -10.44737 -10.23919 -9.89846 -9.34825 -9.11447 -9.11050 -8.37186 -8.12025 -7.76774 -6.03103 -4.05592 1.21952 1.31173 3.14406 3.29997 3.36507 3.39757 3.62376 4.32654 4.44839 4.49261 4.52767 4.68792 4.78865 4.83662 4.90249 4.92196 5.05068 5.13790 5.20908 5.29027 5.32167 5.32719 5.34032 5.40858 5.50970 5.52912 5.60114 5.66111 5.68434 5.73819 5.82409 5.86541 5.90385 5.94299 5.95015 6.00945 6.15722 6.21525 6.26442 6.29716 6.31367 6.46983 6.50657 6.53660 6.69118 6.88424 7.42039 7.45103 7.55571 7.73138 7.81703 8.00996 8.39300 9.00900 9.58347 11.08226 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.020256 B = 0.002238 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.945861 B =12506.750777 C =13415.253492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.052 4.052 3 C -0.144 4.144 4 C -0.121 4.121 5 C -0.077 4.077 6 C -0.207 4.207 7 C 0.134 3.866 8 O -0.310 6.310 9 C 0.087 3.913 10 C -0.108 4.108 11 C 0.058 3.942 12 N -0.540 5.540 13 C 0.062 3.938 14 C 0.020 3.980 15 C -0.522 4.522 16 H 0.054 0.946 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.054 3.946 24 C -0.140 4.140 25 C -0.155 4.155 26 C -0.077 4.077 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.122 0.878 35 H 0.131 0.869 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.029 0.971 40 H 0.079 0.921 41 H 0.020 0.980 42 H 0.064 0.936 43 H 0.020 0.980 44 H 0.026 0.974 45 H 0.261 0.739 46 H 0.101 0.899 47 H 0.027 0.973 48 H 0.068 0.932 49 H 0.082 0.918 50 H 0.128 0.872 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.041 13.149 -4.992 26.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.070 4.070 3 C -0.202 4.202 4 C -0.122 4.122 5 C -0.095 4.095 6 C -0.225 4.225 7 C 0.089 3.911 8 O -0.224 6.224 9 C 0.031 3.969 10 C -0.146 4.146 11 C -0.070 4.070 12 N -0.265 5.265 13 C -0.064 4.064 14 C -0.017 4.017 15 C -0.561 4.561 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.074 4.074 24 C -0.178 4.178 25 C -0.173 4.173 26 C -0.095 4.095 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.140 0.860 35 H 0.148 0.852 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.047 0.953 40 H 0.098 0.902 41 H 0.039 0.961 42 H 0.083 0.917 43 H 0.038 0.962 44 H 0.044 0.956 45 H 0.070 0.930 46 H 0.119 0.881 47 H 0.045 0.955 48 H 0.087 0.913 49 H 0.101 0.899 50 H 0.146 0.854 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -21.727 13.555 -4.449 25.992 hybrid contribution 0.538 -1.497 -0.928 1.842 sum -21.189 12.058 -5.376 24.965 Atomic orbital electron populations 1.21862 0.94586 1.01936 1.01729 1.20043 0.95712 0.95922 0.95372 1.21868 1.01371 0.95218 1.01716 1.19712 1.00681 0.97133 0.94631 1.20857 0.96037 0.94503 0.98068 1.21367 1.05751 1.03317 0.92086 1.19055 0.93444 0.92752 0.85892 1.86111 1.69006 1.37233 1.30025 1.22614 0.91896 0.83122 0.99306 1.21632 1.00088 0.95662 0.97218 1.22011 0.89045 0.95187 1.00785 1.62074 1.06410 1.22315 1.35720 1.22324 0.95342 0.88654 1.00096 1.19252 0.88897 0.97182 0.96372 1.21172 0.96633 0.94290 1.43984 0.92729 1.24996 0.97984 0.95976 0.95387 1.69960 1.15412 1.23477 1.44400 0.86583 0.79738 0.83256 0.78352 1.20715 1.21178 1.19862 1.22146 1.02173 0.92470 0.90588 1.22199 0.93776 0.98908 1.02872 1.20416 1.01142 0.96219 0.99557 1.20721 0.98692 0.98880 0.91187 0.92532 0.92563 0.92592 0.90666 0.92520 0.92469 0.92571 0.86023 0.85156 0.91407 0.91169 0.89909 0.95314 0.90212 0.96143 0.91738 0.96186 0.95603 0.92951 0.88106 0.95475 0.91330 0.89946 0.85412 0.85778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.01 37.16 0.33 -0.60 16 2 C -0.05 -0.39 3.09 -91.77 -0.28 -0.67 16 3 C -0.14 -0.98 9.00 37.16 0.33 -0.65 16 4 C -0.12 -1.16 4.78 -104.60 -0.50 -1.66 16 5 C -0.08 -0.80 9.66 -39.60 -0.38 -1.19 16 6 C -0.21 -2.45 8.28 -39.43 -0.33 -2.78 16 7 C 0.13 1.70 6.60 -39.22 -0.26 1.44 16 8 O -0.31 -4.23 9.81 -19.45 -0.19 -4.42 16 9 C 0.09 1.14 2.17 -26.60 -0.06 1.08 16 10 C -0.11 -1.39 5.75 -26.65 -0.15 -1.54 16 11 C 0.06 0.84 5.42 -3.83 -0.02 0.82 16 12 N -0.54 -9.66 4.81 -234.68 -1.13 -10.79 16 13 C 0.06 1.30 5.21 -3.83 -0.02 1.28 16 14 C 0.02 0.51 4.22 -27.89 -0.12 0.40 16 15 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 19 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.05 0.93 4.85 -3.84 -0.02 0.91 16 24 C -0.14 -2.03 5.38 -26.65 -0.14 -2.17 16 25 C -0.15 -1.71 9.99 -39.43 -0.39 -2.11 16 26 C -0.08 -0.73 8.70 -39.61 -0.34 -1.08 16 27 H 0.06 0.35 7.39 -51.93 -0.38 -0.03 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.54 7.87 -51.93 -0.41 0.13 16 31 H 0.06 0.37 7.38 -51.93 -0.38 -0.01 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.12 1.07 7.94 -52.49 -0.42 0.66 16 35 H 0.13 1.52 5.41 -52.49 -0.28 1.24 16 36 H 0.07 0.86 6.32 -51.93 -0.33 0.53 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 1.08 8.12 -51.93 -0.42 0.66 16 41 H 0.02 0.42 8.08 -51.93 -0.42 0.00 16 42 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 43 H 0.02 0.53 6.21 -51.93 -0.32 0.21 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.10 1.98 5.81 -51.93 -0.30 1.68 16 47 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.94 6.91 -51.93 -0.36 0.58 16 49 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 50 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 51 H 0.12 0.93 7.09 -52.48 -0.37 0.55 16 LS Contribution 393.66 15.07 5.93 5.93 Total: -1.00 -29.91 393.66 -11.45 -41.36 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -9.02 Total: -0.79 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -2.76 Total: -21.93 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: -0.39 Total: -36.68 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -0.19 Total: -4.42 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.91 -11.45 -41.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603850429.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.507 kcal (2) G-P(sol) polarization free energy of solvation -29.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds