Wall clock time and date at job start Tue Mar 31 2020 11:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.52997 * 109.47229 * 89.99423 * 6 5 4 8 8 C 1.52998 * 109.47490 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47794 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47535 * 180.02562 * 9 8 7 11 11 O 1.21290 * 119.99684 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00024 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99849 * 179.97438 * 12 10 9 14 14 C 1.50699 * 109.46930 * 89.99848 * 13 12 10 15 15 H 1.08001 * 120.00638 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99764 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00419 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 120.00095 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46695 * 90.00001 * 18 16 14 20 20 H 1.48501 * 109.47084 * 209.99813 * 18 16 14 21 21 H 1.48490 * 109.46951 * 330.00283 * 18 16 14 22 22 C 1.46493 * 120.00279 * 359.97438 * 12 10 9 23 23 C 1.53001 * 109.47597 * 120.00133 * 22 12 10 24 24 C 1.52995 * 109.47412 * 240.00357 * 22 12 10 25 25 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 26 26 C 1.38234 * 120.00033 * 0.49775 * 25 5 4 27 27 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 28 28 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 29 29 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 30 30 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 33 33 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 34 34 H 1.09004 * 109.47454 * 300.00132 * 7 6 5 35 35 H 1.09006 * 109.47180 * 60.00059 * 7 6 5 36 36 H 1.08999 * 109.47245 * 300.00709 * 8 7 6 37 37 H 1.09006 * 109.46881 * 59.99852 * 8 7 6 38 38 H 1.09000 * 109.46697 * 299.99938 * 9 8 7 39 39 H 1.08993 * 109.47016 * 59.99991 * 9 8 7 40 40 H 1.08999 * 109.46808 * 209.99549 * 13 12 10 41 41 H 1.08995 * 109.47343 * 329.99876 * 13 12 10 42 42 H 0.96997 * 120.00163 * 180.02562 * 17 16 14 43 43 H 1.09004 * 109.47349 * 0.02562 * 22 12 10 44 44 H 1.09004 * 109.46579 * 59.99763 * 23 22 12 45 45 H 1.08997 * 109.47707 * 180.02562 * 23 22 12 46 46 H 1.09004 * 109.47036 * 300.00378 * 23 22 12 47 47 H 1.09000 * 109.47246 * 59.99648 * 24 22 12 48 48 H 1.09003 * 109.47684 * 180.02562 * 24 22 12 49 49 H 1.08997 * 109.47403 * 299.99891 * 24 22 12 50 50 H 1.07999 * 119.99934 * 180.25938 * 25 5 4 51 51 H 1.08001 * 120.00294 * 179.76453 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2941 -0.0027 1.4304 8 6 7.8241 -0.0021 1.4247 9 6 8.3397 -0.0055 2.8652 10 6 9.8466 -0.0042 2.8595 11 8 10.4491 -0.0015 1.8068 12 7 10.5249 -0.0072 4.0241 13 6 11.9899 -0.0066 4.0185 14 6 12.4916 1.4144 4.0205 15 1 11.7895 2.2351 4.0259 16 6 13.8470 1.6669 4.0166 17 7 14.7022 0.6678 4.0106 18 14 14.4690 3.4284 4.0185 19 1 14.6384 3.8920 5.4191 20 1 15.7749 3.4930 3.3143 21 1 13.4882 4.3004 3.3237 22 6 9.7973 -0.0111 5.2955 23 6 10.1705 -1.2624 6.0930 24 6 10.1694 1.2360 6.0999 25 6 3.5805 -1.1972 0.0010 26 6 2.1982 -1.1972 0.0009 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6582 2.1324 -0.0004 31 1 4.1205 2.1325 0.0001 32 1 6.1400 -0.8891 -0.5270 33 1 6.1401 0.8909 -0.5236 34 1 5.9328 0.8863 1.9473 35 1 5.9327 -0.8937 1.9440 36 1 8.1859 -0.8908 0.9076 37 1 8.1851 0.8891 0.9112 38 1 7.9779 0.8831 3.3825 39 1 7.9787 -0.8968 3.3782 40 1 12.3568 -0.5227 4.9057 41 1 12.3501 -0.5177 3.1257 42 1 15.6557 0.8454 4.0082 43 1 8.7249 -0.0115 5.1005 44 1 11.2429 -1.2625 6.2880 45 1 9.6288 -1.2656 7.0388 46 1 9.9054 -2.1510 5.5199 47 1 9.9035 2.1274 5.5319 48 1 9.6283 1.2329 7.0462 49 1 11.2417 1.2360 6.2951 50 1 4.1205 -2.1325 0.0013 51 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608814542.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:47 Heat of formation + Delta-G solvation = -48.974461 kcal Electronic energy + Delta-G solvation = -25860.584279 eV Core-core repulsion = 22337.373961 eV Total energy + Delta-G solvation = -3523.210318 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.70961 -39.17768 -36.19392 -35.55792 -33.28267 -32.72397 -31.11785 -30.77931 -30.26292 -27.78923 -26.74305 -26.36908 -24.06264 -22.91601 -22.57452 -21.37909 -20.84581 -20.67168 -17.85334 -16.50624 -16.43895 -16.25869 -16.01342 -15.30870 -15.27473 -15.03164 -14.30006 -14.11656 -14.05233 -13.61276 -13.50580 -13.46844 -13.21043 -13.01521 -12.80139 -12.54350 -12.32039 -12.09543 -11.98101 -11.78128 -11.60924 -11.49324 -11.33263 -11.24999 -11.01016 -10.99744 -10.90066 -10.82260 -10.75174 -10.49054 -10.44195 -10.32167 -9.96884 -9.50088 -9.12045 -8.80429 -8.62454 -8.38699 -7.58010 -5.99897 -4.02895 1.13278 1.20725 3.31334 3.38336 3.41962 3.53094 3.53792 3.98946 4.47388 4.54888 4.57332 4.71343 4.82010 4.89670 5.03769 5.09946 5.11137 5.26317 5.28678 5.30750 5.34037 5.38961 5.43953 5.50776 5.56614 5.60731 5.63803 5.70286 5.78021 5.84878 5.86296 5.93060 5.94525 6.04493 6.08936 6.20147 6.23707 6.31701 6.35561 6.37726 6.39524 6.51945 6.54086 6.63171 6.82899 6.98874 7.17671 7.52421 7.64150 7.97478 8.30288 8.53265 8.96682 9.19354 9.61125 11.08166 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.020299 B = 0.002152 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.024077 B =13007.869039 C =13435.617992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.098 4.098 3 C -0.119 4.119 4 C -0.114 4.114 5 C -0.080 4.080 6 C -0.083 4.083 7 C -0.111 4.111 8 C -0.103 4.103 9 C -0.140 4.140 10 C 0.503 3.497 11 O -0.544 6.544 12 N -0.595 5.595 13 C 0.245 3.755 14 C -0.516 4.516 15 H 0.057 0.943 16 C 0.059 3.941 17 N -0.896 5.896 18 Si 0.894 3.106 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.133 3.867 23 C -0.162 4.162 24 C -0.157 4.157 25 C -0.115 4.115 26 C -0.120 4.120 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.033 0.967 41 H 0.040 0.960 42 H 0.262 0.738 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.057 0.943 46 H 0.051 0.949 47 H 0.053 0.947 48 H 0.048 0.952 49 H 0.080 0.920 50 H 0.121 0.879 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.971 -2.997 -2.792 26.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.098 4.098 3 C -0.137 4.137 4 C -0.132 4.132 5 C -0.080 4.080 6 C -0.120 4.120 7 C -0.149 4.149 8 C -0.141 4.141 9 C -0.180 4.180 10 C 0.289 3.711 11 O -0.422 6.422 12 N -0.327 5.327 13 C 0.126 3.874 14 C -0.555 4.555 15 H 0.076 0.924 16 C -0.143 4.143 17 N -0.535 5.535 18 Si 0.722 3.278 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.200 1.200 22 C 0.029 3.971 23 C -0.220 4.220 24 C -0.215 4.215 25 C -0.133 4.133 26 C -0.138 4.138 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.066 0.934 49 H 0.099 0.901 50 H 0.139 0.861 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -25.428 -3.041 -3.340 25.826 hybrid contribution 0.474 1.021 0.172 1.138 sum -24.954 -2.021 -3.169 25.235 Atomic orbital electron populations 1.20775 0.91416 1.02645 1.02157 1.19903 0.95959 0.93315 1.00580 1.21017 0.94228 0.97430 1.01065 1.21081 0.94075 0.97805 1.00283 1.19988 0.96025 0.93070 0.98953 1.20650 0.90179 1.03278 0.97920 1.21589 0.95635 1.02137 0.95513 1.21334 0.93487 1.03648 0.95615 1.21702 0.94136 1.03217 0.98988 1.20410 0.89239 0.77267 0.84139 1.90659 1.70587 1.50239 1.30762 1.48342 1.09305 1.71073 1.03980 1.19215 0.72627 0.97369 0.98192 1.21442 0.91504 0.92348 1.50242 0.92447 1.24937 0.96795 0.97151 0.95406 1.69933 1.02161 1.30587 1.50842 0.86554 0.78283 0.85020 0.77908 1.20734 1.21194 1.19975 1.20979 0.95531 0.95481 0.85155 1.22159 1.03132 0.97380 0.99314 1.22138 1.04035 0.97110 0.98207 1.21069 0.94062 0.97763 1.00368 1.21013 0.94224 0.97413 1.01114 0.91363 0.91670 0.91665 0.86288 0.86026 0.90843 0.90810 0.91944 0.91986 0.91303 0.91171 0.89763 0.89910 0.94918 0.94166 0.92857 0.90691 0.91351 0.92356 0.92978 0.92798 0.93351 0.90120 0.86057 0.86299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.01 36.01 0.36 -0.32 16 2 C -0.10 -0.84 5.88 -104.62 -0.62 -1.45 16 3 C -0.12 -1.06 9.70 -39.58 -0.38 -1.44 16 4 C -0.11 -1.09 9.70 -39.58 -0.38 -1.48 16 5 C -0.08 -0.80 5.13 -104.63 -0.54 -1.34 16 6 C -0.08 -0.82 5.34 -27.89 -0.15 -0.97 16 7 C -0.11 -1.17 5.20 -26.73 -0.14 -1.31 16 8 C -0.10 -1.40 4.50 -26.73 -0.12 -1.52 16 9 C -0.14 -2.06 4.01 -27.88 -0.11 -2.17 16 10 C 0.50 10.47 7.67 -10.99 -0.08 10.39 16 11 O -0.54 -13.80 15.56 5.55 0.09 -13.72 16 12 N -0.59 -12.56 2.39 -167.48 -0.40 -12.96 16 13 C 0.25 6.38 4.60 -5.19 -0.02 6.36 16 14 C -0.52 -14.46 7.83 -34.44 -0.27 -14.73 16 15 H 0.06 1.61 7.63 -52.49 -0.40 1.21 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 17 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 18 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 22 C 0.13 2.18 3.17 -67.94 -0.22 1.97 16 23 C -0.16 -2.39 9.17 37.16 0.34 -2.05 16 24 C -0.16 -2.61 8.47 37.16 0.31 -2.29 16 25 C -0.11 -1.08 9.70 -39.58 -0.38 -1.46 16 26 C -0.12 -1.05 9.70 -39.58 -0.38 -1.43 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 29 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 30 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 31 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 32 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 33 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 37 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 38 H 0.08 1.12 7.79 -51.93 -0.40 0.72 16 39 H 0.08 1.04 7.79 -51.93 -0.40 0.63 16 40 H 0.03 0.86 6.43 -51.93 -0.33 0.53 16 41 H 0.04 1.20 7.42 -51.93 -0.39 0.81 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.08 1.02 5.77 -51.93 -0.30 0.72 16 44 H 0.07 1.16 6.66 -51.93 -0.35 0.81 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.08 1.59 6.92 -51.93 -0.36 1.23 16 50 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 51 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 409.83 15.07 6.18 6.18 Total: -1.00 -32.85 409.83 -10.54 -43.40 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -9.24 Total: -0.26 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -2.88 Total: -13.67 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.34 Total: -38.89 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.09 Total: -13.72 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.85 -10.54 -43.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814542.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.578 kcal (2) G-P(sol) polarization free energy of solvation -32.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds